Wall clock time and date at job start Fri Apr 10 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99941 * 2 1 4 4 H 1.48505 * 109.47066 * 270.00043 * 3 2 1 5 5 H 1.48495 * 109.47035 * 30.00042 * 3 2 1 6 6 H 1.48507 * 109.47102 * 150.00207 * 3 2 1 7 7 C 1.37882 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.27541 * 7 2 1 10 10 H 1.08996 * 109.49716 * 59.72460 * 9 7 2 11 11 C 1.53044 * 109.49612 * 299.65732 * 9 7 2 12 12 C 1.53034 * 109.53449 * 178.68301 * 11 9 7 13 13 C 1.53191 * 109.31507 * 61.36705 * 12 11 9 14 14 N 1.46927 * 108.77438 * 305.36498 * 13 12 11 15 15 C 1.34776 * 120.62788 * 233.60448 * 14 13 12 16 16 O 1.21283 * 120.00426 * 354.79349 * 15 14 13 17 17 C 1.50703 * 119.99695 * 174.78718 * 15 14 13 18 18 H 1.09002 * 109.68207 * 324.80261 * 17 15 14 19 19 C 1.53335 * 109.68031 * 204.28171 * 17 15 14 20 20 C 1.52733 * 108.38429 * 170.37294 * 19 17 15 21 21 C 1.50632 * 110.59660 * 51.02280 * 20 19 17 22 22 C 1.38920 * 117.74646 * 162.50465 * 21 20 19 23 23 C 1.37932 * 120.54076 * 179.80748 * 22 21 20 24 24 C 1.38262 * 119.77949 * 359.95201 * 23 22 21 25 25 C 1.37939 * 119.76382 * 0.10877 * 24 23 22 26 26 C 1.37656 * 122.57249 * 342.45925 * 21 20 19 27 27 C 1.50643 * 122.58065 * 0.40678 * 26 21 20 28 28 C 1.46937 * 118.76627 * 53.58406 * 14 13 12 29 29 H 0.97002 * 120.00096 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46160 * 298.70545 * 11 9 7 31 31 H 1.09004 * 109.45812 * 58.67857 * 11 9 7 32 32 H 1.09005 * 109.49580 * 181.31786 * 12 11 9 33 33 H 1.09003 * 109.50363 * 301.38053 * 12 11 9 34 34 H 1.09008 * 109.58333 * 65.14980 * 13 12 11 35 35 H 1.09002 * 109.59043 * 185.43175 * 13 12 11 36 36 H 1.08995 * 109.67980 * 290.09155 * 19 17 15 37 37 H 1.08998 * 109.68108 * 50.64938 * 19 17 15 38 38 H 1.08993 * 109.25370 * 171.31286 * 20 19 17 39 39 H 1.09002 * 109.24961 * 290.77654 * 20 19 17 40 40 H 1.07997 * 119.73378 * 359.78396 * 22 21 20 41 41 H 1.08006 * 120.10898 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.12229 * 180.08802 * 24 23 22 43 43 H 1.08006 * 119.72617 * 180.02562 * 25 24 23 44 44 H 1.09008 * 109.29100 * 222.13135 * 27 26 21 45 45 H 1.08995 * 109.23374 * 102.69629 * 27 26 21 46 46 H 1.08998 * 109.61317 * 186.64137 * 28 14 13 47 47 H 1.09006 * 109.55837 * 66.21478 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0052 10 1 0.6242 -2.5535 -0.8952 11 6 0.3722 -2.5870 1.2447 12 6 -0.4181 -3.8973 1.2235 13 6 0.5578 -5.0780 1.2347 14 7 1.5000 -4.9234 0.1179 15 6 1.6764 -5.9181 -0.7742 16 8 1.1273 -6.9866 -0.6077 17 6 2.5560 -5.7026 -1.9788 18 1 2.4584 -4.6737 -2.3253 19 6 2.1436 -6.6658 -3.0983 20 6 2.8810 -6.2652 -4.3744 21 6 4.3581 -6.1286 -4.1122 22 6 5.2129 -6.1380 -5.2072 23 6 6.5756 -6.0128 -5.0336 24 6 7.0959 -5.8757 -3.7600 25 6 6.2487 -5.8674 -2.6714 26 6 4.8764 -5.9962 -2.8438 27 6 4.0110 -5.9858 -1.6108 28 6 2.2460 -3.6639 -0.0087 29 1 -0.4850 0.8401 0.0004 30 1 1.0017 -2.5570 2.1341 31 1 -0.3205 -1.7456 1.2614 32 1 -1.0613 -3.9485 2.1021 33 1 -1.0297 -3.9388 0.3221 34 1 1.1064 -5.0896 2.1766 35 1 0.0047 -6.0105 1.1225 36 1 2.4133 -7.6854 -2.8232 37 1 1.0677 -6.6011 -3.2605 38 1 2.7204 -7.0275 -5.1367 39 1 2.4903 -5.3122 -4.7312 40 1 4.8074 -6.2446 -6.2024 41 1 7.2338 -6.0214 -5.8899 42 1 8.1618 -5.7759 -3.6179 43 1 6.6558 -5.7599 -1.6768 44 1 4.3659 -5.2135 -0.9282 45 1 4.0750 -6.9563 -1.1190 46 1 2.8065 -3.6630 -0.9435 47 1 2.9327 -3.5605 0.8316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397665769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:05 Heat of formation + Delta-G solvation = -36.955304 kcal Electronic energy + Delta-G solvation = -26569.701148 eV Core-core repulsion = 23101.634977 eV Total energy + Delta-G solvation = -3468.066171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49292 -39.26699 -36.94231 -35.62243 -33.36036 -32.70882 -31.64308 -30.39036 -29.97608 -28.83375 -25.29138 -24.92816 -23.77105 -22.97213 -22.17710 -21.51376 -20.19839 -19.15975 -18.20460 -16.97630 -16.48158 -16.15920 -15.66114 -15.52258 -14.84022 -14.65125 -14.26938 -14.20398 -13.87006 -13.57473 -13.31431 -13.23951 -12.97505 -12.84581 -12.62560 -12.46874 -12.18442 -11.98932 -11.86208 -11.48253 -11.40522 -11.05669 -10.94883 -10.87070 -10.80905 -10.71353 -10.41053 -10.26321 -9.99249 -9.79447 -9.63307 -9.11334 -8.89137 -8.77191 -8.55045 -8.44752 -7.91978 -6.08007 -4.16384 1.35018 1.35364 3.01472 3.24881 3.32422 3.34361 3.52774 3.72739 4.35696 4.57480 4.63617 4.89382 4.91642 4.96902 5.09412 5.14247 5.21241 5.23565 5.36196 5.50478 5.56075 5.60189 5.71497 5.75468 5.79506 5.80719 5.88838 5.95508 6.00020 6.03354 6.06234 6.20527 6.23006 6.31195 6.36926 6.47821 6.48085 6.52180 6.53839 6.67123 6.75603 6.96808 6.99877 7.13876 7.30910 7.62709 7.84759 7.93669 8.04166 8.30013 8.62711 8.87299 9.49334 10.97189 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.004352 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.400073 B = 6432.931061 C = 8018.077179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.601 5.601 15 C 0.518 3.482 16 O -0.562 6.562 17 C -0.108 4.108 18 H 0.102 0.898 19 C -0.096 4.096 20 C -0.082 4.082 21 C -0.073 4.073 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.068 4.068 27 C -0.069 4.069 28 C 0.108 3.892 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -11.220 -6.240 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.332 5.332 15 C 0.306 3.694 16 O -0.441 6.441 17 C -0.129 4.129 18 H 0.120 0.880 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.073 4.073 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.068 4.068 27 C -0.106 4.106 28 C -0.014 4.014 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.149 -11.640 -6.129 15.475 hybrid contribution 0.543 1.191 0.037 1.310 sum 8.692 -10.449 -6.092 14.895 Atomic orbital electron populations 1.69875 1.05914 1.26571 1.50112 1.24930 0.94816 0.99073 0.94836 0.86610 0.79886 0.83451 0.78155 1.20662 1.21221 1.19867 1.21049 0.92890 0.90252 1.51431 0.92480 1.18979 0.92888 0.91047 0.95082 0.95197 1.21622 0.99430 0.95514 0.98426 1.21997 0.97725 0.96554 1.00938 1.21561 0.91357 0.99470 0.88409 1.48321 1.41882 1.16143 1.26858 1.20454 0.81689 0.83545 0.83668 1.90616 1.51014 1.25695 1.76821 1.21333 0.94621 1.02539 0.94434 0.87977 1.21348 1.00312 0.99085 0.92664 1.20535 0.90796 1.02324 0.98279 1.19663 0.95723 0.99464 0.92425 1.21136 0.93442 1.01071 0.98271 1.21029 0.95236 1.00922 0.97147 1.21028 0.99529 1.00908 0.92790 1.21158 0.92822 1.00506 0.99078 1.19548 0.93787 0.99513 0.93951 1.20400 0.91912 1.03041 0.95281 1.22216 0.95321 0.82855 1.00961 0.92895 0.94593 0.88701 0.92559 0.92505 0.92383 0.90372 0.90902 0.90887 0.90511 0.90208 0.86286 0.86353 0.86271 0.86115 0.89870 0.90147 0.90804 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 11.33 55.43 0.63 -23.53 16 2 C 0.07 1.71 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -13.17 8.56 -34.44 -0.29 -13.46 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.04 0.90 2.25 -91.65 -0.21 0.70 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C -0.13 -2.52 6.08 -26.61 -0.16 -2.68 16 13 C 0.11 2.03 6.41 -3.71 -0.02 2.00 16 14 N -0.60 -10.97 2.97 -172.75 -0.51 -11.48 16 15 C 0.52 9.22 6.79 -10.98 -0.07 9.15 16 16 O -0.56 -11.30 15.71 5.55 0.09 -11.22 16 17 C -0.11 -1.60 1.66 -91.73 -0.15 -1.75 16 18 H 0.10 1.58 6.47 -51.93 -0.34 1.24 16 19 C -0.10 -1.28 4.68 -26.69 -0.12 -1.41 16 20 C -0.08 -0.94 5.67 -28.05 -0.16 -1.10 16 21 C -0.07 -0.89 5.74 -104.62 -0.60 -1.49 16 22 C -0.12 -1.32 9.61 -39.44 -0.38 -1.70 16 23 C -0.13 -1.29 10.05 -39.68 -0.40 -1.69 16 24 C -0.12 -1.32 10.05 -39.68 -0.40 -1.72 16 25 C -0.12 -1.37 9.61 -39.44 -0.38 -1.75 16 26 C -0.07 -0.87 5.74 -104.61 -0.60 -1.47 16 27 C -0.07 -0.92 4.84 -28.05 -0.14 -1.05 16 28 C 0.11 2.06 5.18 -3.71 -0.02 2.04 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.08 1.38 7.05 -51.93 -0.37 1.02 16 36 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.22 8.05 -52.48 -0.42 0.80 16 44 H 0.08 1.09 7.31 -51.92 -0.38 0.71 16 45 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 46 H 0.07 1.32 5.00 -51.93 -0.26 1.06 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -28.60 363.66 -11.21 -39.81 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.53 Total: 4.00 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -4.33 Total: -18.37 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.11 Total: -35.01 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.60 -11.21 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.855 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds