Wall clock time and date at job start Fri Apr 10 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99941 * 2 1 4 4 H 1.48505 * 109.47066 * 270.00043 * 3 2 1 5 5 H 1.48495 * 109.47035 * 30.00042 * 3 2 1 6 6 H 1.48507 * 109.47102 * 150.00207 * 3 2 1 7 7 C 1.37882 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.27541 * 7 2 1 10 10 H 1.08996 * 109.49716 * 59.72460 * 9 7 2 11 11 C 1.53044 * 109.49612 * 299.65732 * 9 7 2 12 12 C 1.53034 * 109.53449 * 178.68301 * 11 9 7 13 13 C 1.53191 * 109.31507 * 61.36705 * 12 11 9 14 14 N 1.46927 * 108.77438 * 305.36498 * 13 12 11 15 15 C 1.34776 * 120.62788 * 233.60448 * 14 13 12 16 16 O 1.21283 * 120.00426 * 354.79349 * 15 14 13 17 17 C 1.50703 * 119.99695 * 174.78718 * 15 14 13 18 18 H 1.09002 * 109.68207 * 324.80261 * 17 15 14 19 19 C 1.53335 * 109.68031 * 204.28171 * 17 15 14 20 20 C 1.52733 * 108.38429 * 170.37294 * 19 17 15 21 21 C 1.50632 * 110.59660 * 51.02280 * 20 19 17 22 22 C 1.38920 * 117.74646 * 162.50465 * 21 20 19 23 23 C 1.37932 * 120.54076 * 179.80748 * 22 21 20 24 24 C 1.38262 * 119.77949 * 359.95201 * 23 22 21 25 25 C 1.37939 * 119.76382 * 0.10877 * 24 23 22 26 26 C 1.37656 * 122.57249 * 342.45925 * 21 20 19 27 27 C 1.50643 * 122.58065 * 0.40678 * 26 21 20 28 28 C 1.46937 * 118.76627 * 53.58406 * 14 13 12 29 29 H 0.97002 * 120.00096 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46160 * 298.70545 * 11 9 7 31 31 H 1.09004 * 109.45812 * 58.67857 * 11 9 7 32 32 H 1.09005 * 109.49580 * 181.31786 * 12 11 9 33 33 H 1.09003 * 109.50363 * 301.38053 * 12 11 9 34 34 H 1.09008 * 109.58333 * 65.14980 * 13 12 11 35 35 H 1.09002 * 109.59043 * 185.43175 * 13 12 11 36 36 H 1.08995 * 109.67980 * 290.09155 * 19 17 15 37 37 H 1.08998 * 109.68108 * 50.64938 * 19 17 15 38 38 H 1.08993 * 109.25370 * 171.31286 * 20 19 17 39 39 H 1.09002 * 109.24961 * 290.77654 * 20 19 17 40 40 H 1.07997 * 119.73378 * 359.78396 * 22 21 20 41 41 H 1.08006 * 120.10898 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.12229 * 180.08802 * 24 23 22 43 43 H 1.08006 * 119.72617 * 180.02562 * 25 24 23 44 44 H 1.09008 * 109.29100 * 222.13135 * 27 26 21 45 45 H 1.08995 * 109.23374 * 102.69629 * 27 26 21 46 46 H 1.08998 * 109.61317 * 186.64137 * 28 14 13 47 47 H 1.09006 * 109.55837 * 66.21478 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0052 10 1 0.6242 -2.5535 -0.8952 11 6 0.3722 -2.5870 1.2447 12 6 -0.4181 -3.8973 1.2235 13 6 0.5578 -5.0780 1.2347 14 7 1.5000 -4.9234 0.1179 15 6 1.6764 -5.9181 -0.7742 16 8 1.1273 -6.9866 -0.6077 17 6 2.5560 -5.7026 -1.9788 18 1 2.4584 -4.6737 -2.3253 19 6 2.1436 -6.6658 -3.0983 20 6 2.8810 -6.2652 -4.3744 21 6 4.3581 -6.1286 -4.1122 22 6 5.2129 -6.1380 -5.2072 23 6 6.5756 -6.0128 -5.0336 24 6 7.0959 -5.8757 -3.7600 25 6 6.2487 -5.8674 -2.6714 26 6 4.8764 -5.9962 -2.8438 27 6 4.0110 -5.9858 -1.6108 28 6 2.2460 -3.6639 -0.0087 29 1 -0.4850 0.8401 0.0004 30 1 1.0017 -2.5570 2.1341 31 1 -0.3205 -1.7456 1.2614 32 1 -1.0613 -3.9485 2.1021 33 1 -1.0297 -3.9388 0.3221 34 1 1.1064 -5.0896 2.1766 35 1 0.0047 -6.0105 1.1225 36 1 2.4133 -7.6854 -2.8232 37 1 1.0677 -6.6011 -3.2605 38 1 2.7204 -7.0275 -5.1367 39 1 2.4903 -5.3122 -4.7312 40 1 4.8074 -6.2446 -6.2024 41 1 7.2338 -6.0214 -5.8899 42 1 8.1618 -5.7759 -3.6179 43 1 6.6558 -5.7599 -1.6768 44 1 4.3659 -5.2135 -0.9282 45 1 4.0750 -6.9563 -1.1190 46 1 2.8065 -3.6630 -0.9435 47 1 2.9327 -3.5605 0.8316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397665769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:04 Heat of formation + Delta-G solvation = -49.053236 kcal Electronic energy + Delta-G solvation = -26570.225754 eV Core-core repulsion = 23101.634977 eV Total energy + Delta-G solvation = -3468.590776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70178 -40.41495 -38.49467 -36.71445 -35.18520 -33.77706 -33.07241 -31.97088 -31.15636 -29.79038 -27.04818 -26.46243 -24.92592 -24.12638 -23.11570 -22.98101 -21.65082 -20.37565 -19.65632 -18.58238 -17.89450 -17.39677 -16.90664 -16.74641 -16.44194 -15.78164 -15.61253 -15.24749 -15.11393 -14.90991 -14.85241 -14.53428 -14.33285 -14.09963 -13.81147 -13.75756 -13.59157 -13.37705 -13.00491 -12.86078 -12.71390 -12.55863 -12.43511 -12.30615 -12.07812 -11.92694 -11.78904 -11.68952 -11.58484 -11.41511 -11.27472 -10.79967 -10.56082 -10.40706 -9.60624 -9.49771 -9.41596 -8.07166 -6.21982 0.49991 0.52439 1.43903 1.46046 1.54530 1.59068 2.09842 2.46037 2.88967 3.20728 3.40669 3.65111 3.76610 3.98422 4.05366 4.09600 4.15580 4.21641 4.25911 4.29758 4.35388 4.42558 4.53647 4.54626 4.55655 4.61668 4.71784 4.79842 4.82496 4.87424 4.90875 4.96055 4.98443 5.06060 5.10837 5.18249 5.25704 5.27300 5.32982 5.43432 5.62264 5.63975 5.65226 5.67490 5.79225 5.94038 6.10381 6.18376 6.34050 6.50597 6.89454 7.17465 7.46905 8.96704 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.004352 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.400073 B = 6432.931061 C = 8018.077179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.006 1.006 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.116 3.884 14 N -0.605 5.605 15 C 0.517 3.483 16 O -0.585 6.585 17 C -0.103 4.103 18 H 0.094 0.906 19 C -0.092 4.092 20 C -0.076 4.076 21 C -0.089 4.089 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.088 4.088 27 C -0.061 4.061 28 C 0.123 3.877 29 H 0.259 0.741 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.641 -11.651 -6.884 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.018 3.982 10 H 0.012 0.988 11 C -0.144 4.144 12 C -0.162 4.162 13 C -0.007 4.007 14 N -0.336 5.336 15 C 0.307 3.693 16 O -0.466 6.466 17 C -0.125 4.125 18 H 0.112 0.888 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.089 4.089 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.088 4.088 27 C -0.098 4.098 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.209 -12.077 -6.772 17.203 hybrid contribution -0.101 1.308 0.216 1.329 sum 10.108 -10.769 -6.557 16.160 Atomic orbital electron populations 1.70022 1.07249 1.27061 1.51166 1.25665 0.95501 1.02222 0.94780 0.85671 0.78924 0.79672 0.78076 1.20460 1.21375 1.18910 1.21426 0.93308 0.91351 1.50700 0.92020 1.18910 0.93276 0.92079 0.93892 0.98833 1.21447 0.98916 0.96059 0.97975 1.21874 0.97726 0.95351 1.01226 1.21590 0.91250 0.98716 0.89103 1.48372 1.41991 1.15917 1.27272 1.20955 0.81474 0.82938 0.83975 1.90599 1.52048 1.26572 1.77409 1.21324 0.95214 1.02431 0.93483 0.88778 1.21313 1.00051 0.98419 0.93235 1.20504 0.90347 1.02959 0.97513 1.19829 0.96167 1.00119 0.92794 1.21410 0.93773 1.00604 0.98769 1.21400 0.95424 0.99700 0.97983 1.21360 1.00642 1.00066 0.92618 1.21362 0.92574 1.00657 1.00162 1.19587 0.94310 1.01098 0.93815 1.20305 0.90794 1.02811 0.95898 1.21962 0.94271 0.81705 1.01970 0.93141 0.94346 0.91965 0.90201 0.94218 0.90553 0.90137 0.91384 0.91751 0.88488 0.90162 0.84342 0.83845 0.84057 0.85166 0.89864 0.90474 0.89740 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.04 11.33 21.45 0.24 -50.80 16 2 C 0.02 0.91 5.31 84.66 0.45 1.36 16 3 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.53 -27.04 8.56 25.60 0.22 -26.82 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.04 1.76 2.25 -11.46 -0.03 1.74 16 10 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 11 C -0.11 -4.74 4.96 30.62 0.15 -4.59 16 12 C -0.12 -4.64 6.08 30.67 0.19 -4.45 16 13 C 0.12 3.99 6.41 86.36 0.55 4.55 16 14 N -0.60 -21.85 2.97 -818.86 -2.43 -24.28 16 15 C 0.52 18.33 6.79 87.66 0.60 18.93 16 16 O -0.58 -23.47 15.71 -3.04 -0.05 -23.52 16 17 C -0.10 -3.05 1.66 -11.52 -0.02 -3.07 16 18 H 0.09 2.93 6.47 -2.39 -0.02 2.91 16 19 C -0.09 -2.43 4.68 30.62 0.14 -2.29 16 20 C -0.08 -1.65 5.67 29.74 0.17 -1.48 16 21 C -0.09 -2.05 5.74 -19.86 -0.11 -2.16 16 22 C -0.13 -2.49 9.61 22.36 0.21 -2.27 16 23 C -0.13 -2.26 10.05 22.20 0.22 -2.04 16 24 C -0.13 -2.40 10.05 22.20 0.22 -2.18 16 25 C -0.13 -2.81 9.61 22.36 0.21 -2.59 16 26 C -0.09 -2.15 5.74 -19.86 -0.11 -2.26 16 27 C -0.06 -1.58 4.84 29.74 0.14 -1.43 16 28 C 0.12 4.63 5.18 86.36 0.45 5.08 16 29 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 3.22 6.06 -2.39 -0.01 3.20 16 32 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.08 2.78 7.05 -2.39 -0.02 2.76 16 36 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 38 H 0.10 1.68 8.12 -2.39 -0.02 1.66 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.14 2.06 8.05 -2.91 -0.02 2.04 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.13 2.44 8.05 -2.91 -0.02 2.42 16 44 H 0.08 2.11 7.31 -2.38 -0.02 2.09 16 45 H 0.08 2.02 8.11 -2.39 -0.02 2.00 16 46 H 0.08 3.00 5.00 -2.39 -0.01 2.98 16 47 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -61.57 363.66 4.39 -57.17 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.94 Total: 23.72 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.66 Total: -25.99 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.19 Total: -75.08 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -61.57 4.39 -57.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.120 kcal (2) G-P(sol) polarization free energy of solvation -61.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds