Wall clock time and date at job start Fri Apr 10 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99938 * 2 1 4 4 H 1.48498 * 109.47377 * 270.16950 * 3 2 1 5 5 H 1.48507 * 109.47194 * 30.17310 * 3 2 1 6 6 H 1.48496 * 109.47055 * 150.17073 * 3 2 1 7 7 C 1.38945 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00071 * 25.94503 * 7 2 1 9 9 N 1.37100 * 120.00100 * 205.94801 * 7 2 1 10 10 C 1.34781 * 119.99728 * 52.12979 * 9 7 2 11 11 O 1.21293 * 119.99764 * 176.12565 * 10 9 7 12 12 C 1.50697 * 120.00080 * 356.13498 * 10 9 7 13 13 C 1.50698 * 109.47343 * 173.77576 * 12 10 9 14 14 C 1.38256 * 119.99921 * 266.04382 * 13 12 10 15 15 C 1.38208 * 120.00268 * 179.78604 * 14 13 12 16 16 C 1.38258 * 119.99713 * 0.46102 * 15 14 13 17 17 C 1.38209 * 119.99910 * 359.76824 * 16 15 14 18 18 C 1.50705 * 119.99897 * 179.97438 * 17 16 15 19 19 C 1.52996 * 117.49885 * 8.64386 * 18 17 16 20 20 C 1.52994 * 60.00203 * 252.51146 * 19 18 17 21 21 C 1.38211 * 120.00194 * 86.31210 * 13 12 10 22 22 C 1.46496 * 120.00170 * 232.13370 * 9 7 2 23 23 C 1.54963 * 110.92306 * 306.53850 * 22 9 7 24 24 C 1.54260 * 104.16325 * 156.29512 * 23 22 9 25 25 C 1.53875 * 106.63828 * 336.44948 * 24 23 22 26 26 C 1.54259 * 106.59933 * 359.96893 * 25 24 23 27 27 H 0.97001 * 120.00007 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46841 * 293.77128 * 12 10 9 29 29 H 1.08998 * 109.47322 * 53.76725 * 12 10 9 30 30 H 1.08012 * 119.99731 * 359.97438 * 14 13 12 31 31 H 1.08004 * 120.00249 * 180.25114 * 15 14 13 32 32 H 1.08002 * 119.99960 * 179.79150 * 16 15 14 33 33 H 1.08999 * 115.55059 * 154.35272 * 18 17 16 34 34 H 1.09005 * 117.49877 * 0.02562 * 19 18 17 35 35 H 1.08996 * 117.50052 * 145.01797 * 19 18 17 36 36 H 1.09003 * 117.49976 * 252.51115 * 20 19 18 37 37 H 1.09004 * 117.51799 * 107.48624 * 20 19 18 38 38 H 1.07995 * 119.99893 * 359.97438 * 21 13 12 39 39 H 1.09000 * 110.67415 * 183.23317 * 22 9 7 40 40 H 1.09002 * 110.47684 * 37.64049 * 23 22 9 41 41 H 1.09002 * 110.53374 * 274.97450 * 23 22 9 42 42 H 1.08999 * 110.04111 * 217.13677 * 24 23 22 43 43 H 1.09001 * 110.03255 * 95.75373 * 24 23 22 44 44 H 1.09000 * 110.03903 * 119.26123 * 25 24 23 45 45 H 1.09011 * 110.03019 * 240.64126 * 25 24 23 46 46 H 1.09006 * 110.48857 * 142.28942 * 26 25 24 47 47 H 1.08997 * 110.49243 * 264.93504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4920 2.0485 -1.4000 5 1 1.4473 2.6516 0.7037 6 1 3.5474 1.4391 0.6964 7 6 2.0088 -1.2033 -0.0005 8 1 1.5504 -2.0913 -0.4101 9 7 3.2761 -1.2635 0.5189 10 6 3.5186 -0.7966 1.7598 11 8 4.6235 -0.9133 2.2465 12 6 2.4170 -0.1296 2.5426 13 6 2.8989 0.1605 3.9407 14 6 2.6530 -0.7429 4.9580 15 6 3.0987 -0.4790 6.2393 16 6 3.7822 0.6929 6.5058 17 6 4.0238 1.5982 5.4898 18 6 4.7683 2.8759 5.7804 19 6 5.4056 3.0233 7.1635 20 6 4.1569 3.8320 6.8065 21 6 3.5817 1.3322 4.2071 22 6 4.3668 -1.8351 -0.2747 23 6 3.9988 -3.2529 -0.7805 24 6 4.8880 -3.4521 -2.0253 25 6 5.2466 -2.0470 -2.5400 26 6 4.5622 -1.0420 -1.5907 27 1 -0.4850 0.8401 -0.0004 28 1 2.1377 0.8037 2.0536 29 1 1.5511 -0.7902 2.5863 30 1 2.1152 -1.6564 4.7507 31 1 2.9102 -1.1867 7.0332 32 1 4.1275 0.9007 7.5078 33 1 5.2951 3.3160 4.9337 34 1 5.2867 2.1959 7.8631 35 1 6.3519 3.5603 7.2269 36 1 4.2817 4.9012 6.6350 37 1 3.2160 3.5372 7.2712 38 1 3.7704 2.0397 3.4133 39 1 5.2910 -1.8595 0.3026 40 1 2.9446 -3.2987 -1.0536 41 1 4.2304 -4.0013 -0.0226 42 1 4.3408 -4.0019 -2.7911 43 1 5.7946 -3.9929 -1.7538 44 1 6.3271 -1.9056 -2.5176 45 1 4.8740 -1.9152 -3.5559 46 1 5.2045 -0.1774 -1.4231 47 1 3.5992 -0.7303 -1.9949 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413484673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:16 Heat of formation + Delta-G solvation = 11.937869 kcal Electronic energy + Delta-G solvation = -26485.041903 eV Core-core repulsion = 23019.095899 eV Total energy + Delta-G solvation = -3465.946004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.73244 -38.94724 -37.13394 -36.37640 -34.25423 -32.17377 -31.70039 -30.44910 -28.12652 -27.97534 -26.26615 -24.63896 -23.51721 -22.55389 -21.83872 -20.42638 -19.86098 -19.48247 -18.91378 -17.04166 -16.66463 -15.95391 -15.80582 -15.44147 -14.88336 -14.74730 -14.25943 -14.05977 -13.84480 -13.60632 -13.46975 -12.91591 -12.71310 -12.63824 -12.39712 -12.14625 -11.99309 -11.70360 -11.44708 -11.37936 -11.09121 -10.89002 -10.77992 -10.75453 -10.71871 -10.57336 -10.53270 -10.32250 -10.21904 -9.99878 -9.91118 -9.72385 -9.00294 -8.74442 -8.31012 -8.08243 -7.52145 -6.56515 -4.23845 1.70456 1.80266 3.03786 3.16742 3.25679 3.74472 3.76403 4.06985 4.22011 4.51797 4.64200 4.78635 4.87633 5.01103 5.13859 5.22136 5.25232 5.29448 5.39812 5.40502 5.48906 5.59309 5.75275 5.82700 5.89718 5.98160 6.01063 6.04480 6.09176 6.10760 6.11210 6.14233 6.17485 6.29740 6.35725 6.38819 6.39805 6.46915 6.53354 6.63389 6.83481 6.83827 6.87802 6.91928 7.06659 7.14277 7.40614 7.64894 7.80526 8.46031 8.94300 9.29469 9.74308 10.53033 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.004207 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.215999 B = 6653.303570 C = 7080.154901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.081 3.919 3 Si 0.845 3.155 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.348 4.348 8 H 0.100 0.900 9 N -0.465 5.465 10 C 0.502 3.498 11 O -0.587 6.587 12 C -0.089 4.089 13 C -0.042 4.042 14 C -0.112 4.112 15 C -0.118 4.118 16 C -0.133 4.133 17 C -0.056 4.056 18 C -0.112 4.112 19 C -0.178 4.178 20 C -0.172 4.172 21 C -0.099 4.099 22 C 0.131 3.869 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.133 4.133 27 H 0.276 0.724 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 2.005 6.717 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.128 4.128 3 Si 0.670 3.330 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.186 5.186 10 C 0.292 3.708 11 O -0.471 6.471 12 C -0.128 4.128 13 C -0.043 4.043 14 C -0.130 4.130 15 C -0.136 4.136 16 C -0.151 4.151 17 C -0.056 4.056 18 C -0.130 4.130 19 C -0.214 4.214 20 C -0.209 4.209 21 C -0.117 4.117 22 C 0.027 3.973 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.171 4.171 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.143 2.027 6.939 9.487 hybrid contribution 0.243 1.063 -0.398 1.160 sum 6.386 3.090 6.541 9.650 Atomic orbital electron populations 1.69797 1.06228 1.28268 1.43913 1.25579 0.94906 0.98035 0.94239 0.87380 0.81956 0.84608 0.79022 1.20298 1.20428 1.18244 1.18797 0.87948 0.96609 1.44111 0.88252 1.43617 1.08205 1.55688 1.11116 1.20310 0.88516 0.80334 0.81672 1.90549 1.25294 1.61303 1.69965 1.20673 0.99297 1.02022 0.90842 1.19632 0.96063 0.93730 0.94827 1.21016 1.00432 0.98970 0.92581 1.20975 0.98955 0.97045 0.96603 1.20841 1.00975 0.94788 0.98456 1.18968 0.98583 0.94468 0.93552 1.21017 1.02553 0.95823 0.93647 1.23031 0.97065 1.03062 0.98290 1.23006 0.97649 0.97171 1.03038 1.20741 0.98063 0.97248 0.95662 1.21990 0.91642 0.92273 0.91388 1.22589 1.00967 0.96759 0.96228 1.22043 0.99182 0.96759 0.97754 1.22032 0.99604 0.95147 0.98909 1.22644 1.01225 0.97375 0.95868 0.91361 0.90184 0.87109 0.86110 0.86429 0.86619 0.87206 0.88400 0.88712 0.88718 0.88622 0.86890 0.89610 0.90087 0.92527 0.92273 0.92558 0.92576 0.92270 0.92881 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.17 13.96 55.50 0.77 -21.40 16 2 C 0.08 2.04 4.09 -17.47 -0.07 1.97 16 3 Si 0.84 19.89 24.67 -169.99 -4.19 15.69 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -6.27 5.95 56.52 0.34 -5.93 16 7 C -0.35 -8.62 7.54 -14.93 -0.11 -8.73 16 8 H 0.10 2.60 6.85 -52.48 -0.36 2.24 16 9 N -0.47 -10.97 1.98 -105.58 -0.21 -11.18 16 10 C 0.50 12.21 5.80 -10.98 -0.06 12.14 16 11 O -0.59 -15.31 15.42 5.55 0.09 -15.23 16 12 C -0.09 -1.99 3.85 -29.04 -0.11 -2.11 16 13 C -0.04 -0.85 4.38 -104.63 -0.46 -1.31 16 14 C -0.11 -2.01 9.69 -39.59 -0.38 -2.39 16 15 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 16 C -0.13 -2.00 9.30 -39.58 -0.37 -2.37 16 17 C -0.06 -0.91 5.61 -104.62 -0.59 -1.50 16 18 C -0.11 -1.52 6.04 -91.77 -0.55 -2.07 16 19 C -0.18 -1.92 9.86 -26.74 -0.26 -2.19 16 20 C -0.17 -1.90 10.16 -26.73 -0.27 -2.17 16 21 C -0.10 -1.91 9.41 -39.59 -0.37 -2.28 16 22 C 0.13 2.74 3.29 -65.90 -0.22 2.52 16 23 C -0.13 -2.30 6.36 -25.04 -0.16 -2.46 16 24 C -0.12 -1.78 6.80 -25.62 -0.17 -1.96 16 25 C -0.12 -1.82 6.80 -25.62 -0.17 -2.00 16 26 C -0.13 -2.53 6.39 -25.08 -0.16 -2.69 16 27 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 1.84 3.36 -51.93 -0.17 1.67 16 29 H 0.11 2.48 7.67 -51.93 -0.40 2.09 16 30 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.12 1.42 6.02 -52.49 -0.32 1.11 16 33 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.10 1.01 6.18 -51.93 -0.32 0.69 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 39 H 0.09 1.88 7.00 -51.93 -0.36 1.51 16 40 H 0.08 1.57 6.42 -51.93 -0.33 1.24 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.72 7.30 -51.93 -0.38 1.34 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -28.18 366.32 -10.27 -38.45 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.34 Total: 9.95 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -4.90 Total: -21.81 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.57 Total: -32.58 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.23 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.19 Total: 15.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.18 -10.27 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413484673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.387 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds