Wall clock time and date at job start Fri Apr 10 2020 22:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99938 * 2 1 4 4 H 1.48498 * 109.47377 * 270.16950 * 3 2 1 5 5 H 1.48507 * 109.47194 * 30.17310 * 3 2 1 6 6 H 1.48496 * 109.47055 * 150.17073 * 3 2 1 7 7 C 1.38945 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00071 * 25.94503 * 7 2 1 9 9 N 1.37100 * 120.00100 * 205.94801 * 7 2 1 10 10 C 1.34781 * 119.99728 * 52.12979 * 9 7 2 11 11 O 1.21293 * 119.99764 * 176.12565 * 10 9 7 12 12 C 1.50697 * 120.00080 * 356.13498 * 10 9 7 13 13 C 1.50698 * 109.47343 * 173.77576 * 12 10 9 14 14 C 1.38256 * 119.99921 * 266.04382 * 13 12 10 15 15 C 1.38208 * 120.00268 * 179.78604 * 14 13 12 16 16 C 1.38258 * 119.99713 * 0.46102 * 15 14 13 17 17 C 1.38209 * 119.99910 * 359.76824 * 16 15 14 18 18 C 1.50705 * 119.99897 * 179.97438 * 17 16 15 19 19 C 1.52996 * 117.49885 * 8.64386 * 18 17 16 20 20 C 1.52994 * 60.00203 * 252.51146 * 19 18 17 21 21 C 1.38211 * 120.00194 * 86.31210 * 13 12 10 22 22 C 1.46496 * 120.00170 * 232.13370 * 9 7 2 23 23 C 1.54963 * 110.92306 * 306.53850 * 22 9 7 24 24 C 1.54260 * 104.16325 * 156.29512 * 23 22 9 25 25 C 1.53875 * 106.63828 * 336.44948 * 24 23 22 26 26 C 1.54259 * 106.59933 * 359.96893 * 25 24 23 27 27 H 0.97001 * 120.00007 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46841 * 293.77128 * 12 10 9 29 29 H 1.08998 * 109.47322 * 53.76725 * 12 10 9 30 30 H 1.08012 * 119.99731 * 359.97438 * 14 13 12 31 31 H 1.08004 * 120.00249 * 180.25114 * 15 14 13 32 32 H 1.08002 * 119.99960 * 179.79150 * 16 15 14 33 33 H 1.08999 * 115.55059 * 154.35272 * 18 17 16 34 34 H 1.09005 * 117.49877 * 0.02562 * 19 18 17 35 35 H 1.08996 * 117.50052 * 145.01797 * 19 18 17 36 36 H 1.09003 * 117.49976 * 252.51115 * 20 19 18 37 37 H 1.09004 * 117.51799 * 107.48624 * 20 19 18 38 38 H 1.07995 * 119.99893 * 359.97438 * 21 13 12 39 39 H 1.09000 * 110.67415 * 183.23317 * 22 9 7 40 40 H 1.09002 * 110.47684 * 37.64049 * 23 22 9 41 41 H 1.09002 * 110.53374 * 274.97450 * 23 22 9 42 42 H 1.08999 * 110.04111 * 217.13677 * 24 23 22 43 43 H 1.09001 * 110.03255 * 95.75373 * 24 23 22 44 44 H 1.09000 * 110.03903 * 119.26123 * 25 24 23 45 45 H 1.09011 * 110.03019 * 240.64126 * 25 24 23 46 46 H 1.09006 * 110.48857 * 142.28942 * 26 25 24 47 47 H 1.08997 * 110.49243 * 264.93504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4920 2.0485 -1.4000 5 1 1.4473 2.6516 0.7037 6 1 3.5474 1.4391 0.6964 7 6 2.0088 -1.2033 -0.0005 8 1 1.5504 -2.0913 -0.4101 9 7 3.2761 -1.2635 0.5189 10 6 3.5186 -0.7966 1.7598 11 8 4.6235 -0.9133 2.2465 12 6 2.4170 -0.1296 2.5426 13 6 2.8989 0.1605 3.9407 14 6 2.6530 -0.7429 4.9580 15 6 3.0987 -0.4790 6.2393 16 6 3.7822 0.6929 6.5058 17 6 4.0238 1.5982 5.4898 18 6 4.7683 2.8759 5.7804 19 6 5.4056 3.0233 7.1635 20 6 4.1569 3.8320 6.8065 21 6 3.5817 1.3322 4.2071 22 6 4.3668 -1.8351 -0.2747 23 6 3.9988 -3.2529 -0.7805 24 6 4.8880 -3.4521 -2.0253 25 6 5.2466 -2.0470 -2.5400 26 6 4.5622 -1.0420 -1.5907 27 1 -0.4850 0.8401 -0.0004 28 1 2.1377 0.8037 2.0536 29 1 1.5511 -0.7902 2.5863 30 1 2.1152 -1.6564 4.7507 31 1 2.9102 -1.1867 7.0332 32 1 4.1275 0.9007 7.5078 33 1 5.2951 3.3160 4.9337 34 1 5.2867 2.1959 7.8631 35 1 6.3519 3.5603 7.2269 36 1 4.2817 4.9012 6.6350 37 1 3.2160 3.5372 7.2712 38 1 3.7704 2.0397 3.4133 39 1 5.2910 -1.8595 0.3026 40 1 2.9446 -3.2987 -1.0536 41 1 4.2304 -4.0013 -0.0226 42 1 4.3408 -4.0019 -2.7911 43 1 5.7946 -3.9929 -1.7538 44 1 6.3271 -1.9056 -2.5176 45 1 4.8740 -1.9152 -3.5559 46 1 5.2045 -0.1774 -1.4231 47 1 3.5992 -0.7303 -1.9949 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413484673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:15 Heat of formation + Delta-G solvation = -0.241191 kcal Electronic energy + Delta-G solvation = -26485.570027 eV Core-core repulsion = 23019.095899 eV Total energy + Delta-G solvation = -3466.474127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34397 -40.40312 -38.59129 -37.60242 -36.14670 -33.88114 -33.41791 -31.71834 -29.56751 -29.50196 -27.85937 -26.55038 -24.69125 -23.59589 -23.00643 -21.94465 -21.43298 -21.01006 -20.36329 -18.91931 -17.94310 -17.67293 -17.42472 -16.79856 -16.35430 -16.21165 -15.87591 -15.65039 -15.28195 -15.07290 -14.96418 -14.65976 -14.18483 -14.14015 -13.92109 -13.64586 -13.29603 -13.17635 -13.05203 -12.97968 -12.57543 -12.43372 -12.26167 -12.07623 -12.04519 -11.98873 -11.93648 -11.77933 -11.52040 -11.45069 -11.26164 -11.18425 -10.96623 -10.63101 -9.69779 -9.44256 -9.39069 -8.59449 -6.26559 0.38871 0.45047 1.09676 1.20476 1.28945 1.82084 2.09747 2.50551 2.74928 2.86894 3.16027 3.55852 3.80318 3.81668 3.82561 3.94893 3.97435 4.07338 4.12903 4.16417 4.20926 4.28106 4.33516 4.51760 4.58131 4.61359 4.65128 4.68506 4.72372 4.74591 4.78848 4.87956 4.93444 4.94523 5.09089 5.11910 5.12395 5.16147 5.20324 5.24763 5.33797 5.44167 5.53402 5.53730 5.64069 5.67790 5.71774 5.89340 6.10299 6.43552 6.93574 7.34134 7.80223 8.53523 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.004207 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.215999 B = 6653.303570 C = 7080.154901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.341 4.341 8 H 0.083 0.917 9 N -0.469 5.469 10 C 0.493 3.507 11 O -0.610 6.610 12 C -0.081 4.081 13 C -0.071 4.071 14 C -0.131 4.131 15 C -0.109 4.109 16 C -0.128 4.128 17 C -0.053 4.053 18 C -0.147 4.147 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.128 4.128 22 C 0.117 3.883 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.111 4.111 26 C -0.132 4.132 27 H 0.281 0.719 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 2.074 8.157 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.144 4.144 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.189 5.189 10 C 0.283 3.717 11 O -0.495 6.495 12 C -0.120 4.120 13 C -0.071 4.071 14 C -0.149 4.149 15 C -0.126 4.126 16 C -0.146 4.146 17 C -0.053 4.053 18 C -0.165 4.165 19 C -0.195 4.195 20 C -0.196 4.196 21 C -0.146 4.146 22 C 0.014 3.986 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.171 4.171 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.537 2.096 8.355 11.445 hybrid contribution -0.167 1.030 -0.772 1.298 sum 7.370 3.126 7.583 11.027 Atomic orbital electron populations 1.69825 1.06921 1.29036 1.45065 1.25801 0.95095 0.99400 0.94103 0.86783 0.80462 0.83019 0.78741 1.19878 1.19740 1.20092 1.18602 0.88549 0.96044 1.43589 0.89922 1.43748 1.08534 1.55428 1.11238 1.20706 0.88735 0.80331 0.81937 1.90506 1.26183 1.62358 1.70474 1.20525 0.98297 1.00772 0.92402 1.19611 0.98107 0.95286 0.94115 1.21186 1.01378 0.98894 0.93433 1.21398 0.97302 0.97729 0.96217 1.21278 0.99786 0.93884 0.99649 1.19289 0.97586 0.95871 0.92583 1.21032 1.04594 0.95694 0.95169 1.23172 0.97690 1.03051 0.95550 1.23099 0.98033 0.97647 1.00832 1.20766 0.99819 0.97099 0.96951 1.22246 0.90277 0.94353 0.91711 1.22534 1.00722 0.94879 0.97942 1.22031 0.99510 0.96993 0.96357 1.22028 1.00459 0.93841 0.98599 1.22615 1.00536 0.98167 0.95741 0.90862 0.91401 0.88160 0.85744 0.82715 0.82975 0.88039 0.87307 0.86981 0.87189 0.88397 0.88682 0.90836 0.91819 0.92307 0.90384 0.90448 0.90592 0.90530 0.93467 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.80 13.96 21.66 0.30 -46.50 16 2 C 0.06 3.27 4.09 84.93 0.35 3.62 16 3 Si 0.88 42.48 24.67 68.60 1.69 44.17 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -13.97 5.95 99.48 0.59 -13.38 16 7 C -0.34 -17.55 7.54 84.04 0.63 -16.91 16 8 H 0.08 4.52 6.85 -2.91 -0.02 4.50 16 9 N -0.47 -23.00 1.98 -606.33 -1.20 -24.20 16 10 C 0.49 25.07 5.80 87.66 0.51 25.58 16 11 O -0.61 -33.11 15.42 -3.07 -0.05 -33.15 16 12 C -0.08 -3.81 3.85 29.10 0.11 -3.70 16 13 C -0.07 -2.99 4.38 -19.87 -0.09 -3.07 16 14 C -0.13 -4.73 9.69 22.27 0.22 -4.52 16 15 C -0.11 -3.14 10.05 22.27 0.22 -2.91 16 16 C -0.13 -3.54 9.30 22.27 0.21 -3.34 16 17 C -0.05 -1.72 5.61 -19.87 -0.11 -1.83 16 18 C -0.15 -3.78 6.04 -11.54 -0.07 -3.85 16 19 C -0.16 -2.88 9.86 30.59 0.30 -2.58 16 20 C -0.16 -3.09 10.16 30.59 0.31 -2.78 16 21 C -0.13 -5.13 9.41 22.27 0.21 -4.92 16 22 C 0.12 5.01 3.29 46.31 0.15 5.16 16 23 C -0.12 -4.42 6.36 31.69 0.20 -4.22 16 24 C -0.11 -3.06 6.80 31.32 0.21 -2.85 16 25 C -0.11 -3.17 6.80 31.32 0.21 -2.96 16 26 C -0.13 -5.06 6.39 31.67 0.20 -4.85 16 27 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.07 3.31 3.36 -2.39 -0.01 3.30 16 29 H 0.10 4.80 7.67 -2.39 -0.02 4.78 16 30 H 0.12 4.24 8.06 -2.90 -0.02 4.22 16 31 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.15 3.05 6.02 -2.91 -0.02 3.04 16 33 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 34 H 0.11 1.75 6.18 -2.38 -0.01 1.73 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.07 3.30 7.00 -2.39 -0.02 3.29 16 40 H 0.06 2.51 6.42 -2.39 -0.02 2.50 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 47 H 0.06 2.61 7.30 -2.39 -0.02 2.59 16 Total: -1.00 -63.55 366.32 5.37 -58.17 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.84 Total: 32.43 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.78 Total: -30.91 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.90 Total: -70.70 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.05 Total: -33.15 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.69 Total: 44.17 kcal Total: -63.55 5.37 -58.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413484673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.932 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds