Wall clock time and date at job start Fri Apr 10 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99728 * 2 1 4 4 H 1.48503 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47320 * 299.99870 * 3 2 1 6 6 H 1.48499 * 109.46930 * 60.00326 * 3 2 1 7 7 C 1.37877 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47056 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47427 * 55.00038 * 11 10 9 13 13 N 1.46496 * 109.46832 * 294.99715 * 11 10 9 14 14 C 1.34777 * 119.99702 * 155.00537 * 13 11 10 15 15 O 1.21287 * 120.00166 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00109 * 179.97438 * 14 13 11 17 17 C 1.52999 * 119.30202 * 250.22544 * 16 14 13 18 18 C 1.52993 * 60.38097 * 248.69275 * 17 16 14 19 19 H 1.09003 * 119.29579 * 111.30365 * 18 17 16 20 20 C 1.54268 * 118.19980 * 266.37915 * 18 17 16 21 21 C 1.54886 * 104.19246 * 87.79096 * 20 18 17 22 22 C 1.54268 * 117.41314 * 44.57231 * 16 14 13 23 23 C 1.50702 * 109.46746 * 174.99850 * 11 10 9 24 24 C 1.38234 * 119.99895 * 79.72772 * 23 11 10 25 25 C 1.38240 * 120.00062 * 180.32314 * 24 23 11 26 26 C 1.38234 * 119.99686 * 359.92348 * 25 24 23 27 27 C 1.38234 * 120.00244 * 0.07174 * 26 25 24 28 28 C 1.38230 * 119.99864 * 359.95693 * 27 26 25 29 29 H 0.96998 * 119.99804 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47027 * 59.99839 * 9 7 2 31 31 H 1.09010 * 109.46868 * 300.00253 * 9 7 2 32 32 H 1.09003 * 109.47337 * 59.99875 * 10 9 7 33 33 H 1.09003 * 109.47154 * 300.00207 * 10 9 7 34 34 H 0.96997 * 120.00466 * 334.99730 * 13 11 10 35 35 H 1.09001 * 117.45816 * 356.29832 * 17 16 14 36 36 H 1.08997 * 117.46136 * 141.11095 * 17 16 14 37 37 H 1.08998 * 110.48629 * 206.47079 * 20 18 17 38 38 H 1.08995 * 110.48402 * 329.11111 * 20 18 17 39 39 H 1.09000 * 110.75888 * 80.37413 * 21 20 18 40 40 H 1.08999 * 110.75228 * 203.55767 * 21 20 18 41 41 H 1.09002 * 110.48604 * 235.04517 * 22 16 14 42 42 H 1.08997 * 110.48854 * 357.69067 * 22 16 14 43 43 H 1.08001 * 120.00279 * 0.27436 * 24 23 11 44 44 H 1.07997 * 119.99831 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99747 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 1 0.7886 -5.0069 -0.8440 13 7 0.7302 -5.1183 1.2495 14 6 -0.3714 -5.8933 1.2967 15 8 -0.7419 -6.4818 0.3030 16 6 -1.1428 -6.0288 2.5842 17 6 -1.1110 -7.3589 3.3397 18 6 -2.4082 -6.9000 2.6709 19 1 -2.7824 -7.4438 1.8035 20 6 -3.4276 -6.1132 3.5204 21 6 -2.9826 -4.6367 3.3765 22 6 -1.4157 -4.7405 3.3876 23 6 2.4551 -6.1298 -0.1256 24 6 3.1526 -6.5665 0.9851 25 6 4.0517 -7.6103 0.8703 26 6 4.2520 -8.2183 -0.3548 27 6 3.5545 -7.7817 -1.4655 28 6 2.6559 -6.7375 -1.3508 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8881 32 1 2.8714 -3.6047 0.8890 33 1 2.8728 -3.6039 -0.8909 34 1 1.0264 -4.6475 2.0442 35 1 -0.5727 -8.1865 2.8778 36 1 -1.0650 -7.3178 4.4279 37 1 -4.4356 -6.2479 3.1282 38 1 -3.3779 -6.4268 4.5631 39 1 -3.3363 -4.2166 2.4349 40 1 -3.3359 -4.0429 4.2195 41 1 -1.0500 -4.8433 4.4093 42 1 -0.9532 -3.8820 2.9005 43 1 2.9957 -6.0917 1.9424 44 1 4.5969 -7.9511 1.7380 45 1 4.9541 -9.0340 -0.4444 46 1 3.7114 -8.2565 -2.4228 47 1 2.1112 -6.3961 -2.2186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421572775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:20 Heat of formation + Delta-G solvation = -7.944958 kcal Electronic energy + Delta-G solvation = -26144.554587 eV Core-core repulsion = 22677.746400 eV Total energy + Delta-G solvation = -3466.808188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45202 -39.26617 -37.77678 -35.60464 -33.17390 -31.63405 -31.48650 -30.68689 -30.33907 -28.41491 -26.49212 -23.92270 -23.15784 -22.44258 -22.02382 -21.04254 -20.41607 -19.89401 -18.92991 -17.10588 -16.82772 -16.24223 -15.85924 -15.21498 -15.01776 -14.76663 -14.48303 -14.16704 -13.95959 -13.35700 -13.28239 -13.18351 -13.03061 -12.96911 -12.86205 -12.52841 -12.12177 -11.77052 -11.69723 -11.16269 -11.10679 -11.07783 -10.98752 -10.94282 -10.93183 -10.65153 -10.54072 -10.35408 -9.97900 -9.68978 -9.58597 -9.35797 -9.15805 -8.75595 -8.67043 -8.42575 -8.37877 -6.03202 -4.06179 1.53866 1.58577 2.80957 3.28340 3.36476 3.40113 3.44734 3.68785 4.00673 4.42359 4.43010 4.61523 4.76172 5.00361 5.05094 5.06681 5.14534 5.19058 5.29306 5.32661 5.35373 5.41149 5.50348 5.60109 5.63979 5.67307 5.68558 5.77811 5.84657 5.90128 5.94734 6.08455 6.12747 6.14586 6.19278 6.20135 6.36378 6.38270 6.56590 6.64453 6.66894 6.77094 6.96695 7.00997 7.18462 7.63479 7.74451 7.89809 7.96018 8.37100 8.59859 9.01026 9.58359 11.07597 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.007914 B = 0.005249 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3537.033286 B = 5333.029848 C = 8246.543076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.112 4.112 11 C 0.181 3.819 12 H 0.093 0.907 13 N -0.705 5.705 14 C 0.559 3.441 15 O -0.545 6.545 16 C -0.174 4.174 17 C -0.126 4.126 18 C -0.128 4.128 19 H 0.117 0.883 20 C -0.095 4.095 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.078 4.078 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.107 4.107 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.402 0.598 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -15.630 7.359 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.150 4.150 11 C 0.077 3.923 12 H 0.111 0.889 13 N -0.355 5.355 14 C 0.345 3.655 15 O -0.423 6.423 16 C -0.177 4.177 17 C -0.163 4.163 18 C -0.147 4.147 19 H 0.135 0.865 20 C -0.133 4.133 21 C -0.159 4.159 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.075 -15.898 6.626 17.224 hybrid contribution 0.691 1.218 0.248 1.422 sum 0.617 -14.681 6.873 16.222 Atomic orbital electron populations 1.69981 1.06004 1.26475 1.50709 1.25006 0.94805 0.99184 0.95286 0.86575 0.80149 0.83924 0.77591 1.19751 1.21032 1.21039 1.21261 0.93036 0.90982 1.50722 0.92644 1.19096 0.93701 0.90894 0.97539 1.21977 0.99136 0.92248 1.01673 1.20120 0.91642 0.93120 0.87427 0.88944 1.45897 1.27149 1.48712 1.13733 1.19257 0.79933 0.78258 0.88089 1.90661 1.68449 1.46995 1.36155 1.22389 1.03902 0.93702 0.97751 1.23073 0.99432 0.94658 0.99152 1.23330 0.88440 1.01100 1.01820 0.86470 1.21978 0.97856 0.94430 0.99010 1.23022 0.94613 0.95920 1.02363 1.22348 0.96363 0.94854 0.99086 1.20415 0.97074 0.96836 0.93571 1.20916 0.96222 0.97007 0.98373 1.21067 0.98800 0.96899 0.97447 1.21051 1.00317 1.00349 0.93170 1.21074 0.97055 0.97367 0.98462 1.21038 0.98212 0.95920 0.97360 0.93064 0.96588 0.96281 0.92566 0.91524 0.76361 0.88246 0.88248 0.91035 0.91301 0.90864 0.91132 0.90880 0.89813 0.86455 0.86541 0.86636 0.86396 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.86 -27.88 -0.14 0.47 16 10 C -0.11 -2.20 4.67 -26.73 -0.12 -2.32 16 11 C 0.18 3.20 2.17 -69.08 -0.15 3.05 16 12 H 0.09 1.84 7.44 -51.93 -0.39 1.45 16 13 N -0.71 -11.49 3.60 -54.94 -0.20 -11.69 16 14 C 0.56 9.52 7.37 -10.99 -0.08 9.44 16 15 O -0.55 -11.17 16.45 5.55 0.09 -11.07 16 16 C -0.17 -2.36 2.64 -154.54 -0.41 -2.76 16 17 C -0.13 -1.40 9.85 -26.74 -0.26 -1.66 16 18 C -0.13 -1.57 6.54 -89.50 -0.59 -2.16 16 19 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 20 C -0.10 -0.98 6.63 -25.07 -0.17 -1.15 16 21 C -0.12 -1.41 6.96 -23.55 -0.16 -1.58 16 22 C -0.09 -1.10 6.34 -23.88 -0.15 -1.26 16 23 C -0.08 -1.24 4.91 -104.62 -0.51 -1.76 16 24 C -0.11 -1.53 9.33 -39.58 -0.37 -1.90 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 27 C -0.12 -1.60 10.05 -39.59 -0.40 -1.99 16 28 C -0.11 -1.62 9.67 -39.59 -0.38 -2.00 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.48 7.75 -51.92 -0.40 0.08 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.40 5.92 8.07 -40.82 -0.33 5.59 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.20 7.56 -51.93 -0.39 0.81 16 43 H 0.12 1.55 7.72 -52.49 -0.41 1.14 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.12 1.77 8.04 -52.49 -0.42 1.34 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -31.89 387.21 -11.45 -43.34 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.80 Total: 7.48 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -5.10 Total: -24.61 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.54 Total: -37.22 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.89 -11.45 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421572775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.399 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds