Wall clock time and date at job start Fri Apr 10 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99728 * 2 1 4 4 H 1.48503 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47320 * 299.99870 * 3 2 1 6 6 H 1.48499 * 109.46930 * 60.00326 * 3 2 1 7 7 C 1.37877 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47056 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47427 * 55.00038 * 11 10 9 13 13 N 1.46496 * 109.46832 * 294.99715 * 11 10 9 14 14 C 1.34777 * 119.99702 * 155.00537 * 13 11 10 15 15 O 1.21287 * 120.00166 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00109 * 179.97438 * 14 13 11 17 17 C 1.52999 * 119.30202 * 250.22544 * 16 14 13 18 18 C 1.52993 * 60.38097 * 248.69275 * 17 16 14 19 19 H 1.09003 * 119.29579 * 111.30365 * 18 17 16 20 20 C 1.54268 * 118.19980 * 266.37915 * 18 17 16 21 21 C 1.54886 * 104.19246 * 87.79096 * 20 18 17 22 22 C 1.54268 * 117.41314 * 44.57231 * 16 14 13 23 23 C 1.50702 * 109.46746 * 174.99850 * 11 10 9 24 24 C 1.38234 * 119.99895 * 79.72772 * 23 11 10 25 25 C 1.38240 * 120.00062 * 180.32314 * 24 23 11 26 26 C 1.38234 * 119.99686 * 359.92348 * 25 24 23 27 27 C 1.38234 * 120.00244 * 0.07174 * 26 25 24 28 28 C 1.38230 * 119.99864 * 359.95693 * 27 26 25 29 29 H 0.96998 * 119.99804 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47027 * 59.99839 * 9 7 2 31 31 H 1.09010 * 109.46868 * 300.00253 * 9 7 2 32 32 H 1.09003 * 109.47337 * 59.99875 * 10 9 7 33 33 H 1.09003 * 109.47154 * 300.00207 * 10 9 7 34 34 H 0.96997 * 120.00466 * 334.99730 * 13 11 10 35 35 H 1.09001 * 117.45816 * 356.29832 * 17 16 14 36 36 H 1.08997 * 117.46136 * 141.11095 * 17 16 14 37 37 H 1.08998 * 110.48629 * 206.47079 * 20 18 17 38 38 H 1.08995 * 110.48402 * 329.11111 * 20 18 17 39 39 H 1.09000 * 110.75888 * 80.37413 * 21 20 18 40 40 H 1.08999 * 110.75228 * 203.55767 * 21 20 18 41 41 H 1.09002 * 110.48604 * 235.04517 * 22 16 14 42 42 H 1.08997 * 110.48854 * 357.69067 * 22 16 14 43 43 H 1.08001 * 120.00279 * 0.27436 * 24 23 11 44 44 H 1.07997 * 119.99831 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99747 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 1 0.7886 -5.0069 -0.8440 13 7 0.7302 -5.1183 1.2495 14 6 -0.3714 -5.8933 1.2967 15 8 -0.7419 -6.4818 0.3030 16 6 -1.1428 -6.0288 2.5842 17 6 -1.1110 -7.3589 3.3397 18 6 -2.4082 -6.9000 2.6709 19 1 -2.7824 -7.4438 1.8035 20 6 -3.4276 -6.1132 3.5204 21 6 -2.9826 -4.6367 3.3765 22 6 -1.4157 -4.7405 3.3876 23 6 2.4551 -6.1298 -0.1256 24 6 3.1526 -6.5665 0.9851 25 6 4.0517 -7.6103 0.8703 26 6 4.2520 -8.2183 -0.3548 27 6 3.5545 -7.7817 -1.4655 28 6 2.6559 -6.7375 -1.3508 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8881 32 1 2.8714 -3.6047 0.8890 33 1 2.8728 -3.6039 -0.8909 34 1 1.0264 -4.6475 2.0442 35 1 -0.5727 -8.1865 2.8778 36 1 -1.0650 -7.3178 4.4279 37 1 -4.4356 -6.2479 3.1282 38 1 -3.3779 -6.4268 4.5631 39 1 -3.3363 -4.2166 2.4349 40 1 -3.3359 -4.0429 4.2195 41 1 -1.0500 -4.8433 4.4093 42 1 -0.9532 -3.8820 2.9005 43 1 2.9957 -6.0917 1.9424 44 1 4.5969 -7.9511 1.7380 45 1 4.9541 -9.0340 -0.4444 46 1 3.7114 -8.2565 -2.4228 47 1 2.1112 -6.3961 -2.2186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421572775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:20 Heat of formation + Delta-G solvation = -23.821409 kcal Electronic energy + Delta-G solvation = -26145.243042 eV Core-core repulsion = 22677.746400 eV Total energy + Delta-G solvation = -3467.496642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65672 -40.36624 -38.97605 -37.12157 -35.15985 -33.10802 -32.46207 -31.89987 -31.72924 -29.45192 -28.15179 -25.57799 -24.32042 -23.51874 -23.10439 -22.62779 -21.54046 -21.15438 -20.17829 -18.58180 -18.22373 -17.73659 -17.22636 -16.58775 -16.29860 -16.07863 -15.89424 -15.35632 -15.19843 -14.76998 -14.60177 -14.39769 -14.24321 -14.12161 -13.90195 -13.88824 -13.78463 -13.40449 -12.90597 -12.80157 -12.56420 -12.47162 -12.15617 -12.07224 -11.99886 -11.93320 -11.91468 -11.76960 -11.47082 -11.34227 -11.21367 -10.70293 -10.66591 -10.56596 -10.11091 -9.79626 -9.59253 -8.19911 -6.31460 0.44264 0.52032 1.39222 1.40443 1.52968 1.53144 2.18452 2.40275 2.63952 2.91137 3.13500 3.47602 3.62327 3.71976 3.81570 3.92614 3.96178 4.14633 4.21546 4.25299 4.29150 4.31918 4.41185 4.48014 4.60408 4.62607 4.64952 4.73955 4.76291 4.79646 4.93377 4.97442 5.00217 5.06767 5.13949 5.15126 5.17216 5.19163 5.28153 5.40017 5.45518 5.49227 5.58492 5.61477 5.65038 5.80187 5.82979 6.13312 6.22037 6.56592 6.85444 7.25463 7.38162 8.91541 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.007914 B = 0.005249 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3537.033286 B = 5333.029848 C = 8246.543076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.034 3.966 10 C -0.094 4.094 11 C 0.192 3.808 12 H 0.056 0.944 13 N -0.699 5.699 14 C 0.551 3.449 15 O -0.590 6.590 16 C -0.194 4.194 17 C -0.097 4.097 18 C -0.134 4.134 19 H 0.097 0.903 20 C -0.085 4.085 21 C -0.125 4.125 22 C -0.085 4.085 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.131 4.131 29 H 0.262 0.738 30 H -0.024 1.024 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -16.838 9.848 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.132 4.132 11 C 0.087 3.913 12 H 0.075 0.925 13 N -0.349 5.349 14 C 0.339 3.661 15 O -0.471 6.471 16 C -0.197 4.197 17 C -0.134 4.134 18 C -0.153 4.153 19 H 0.115 0.885 20 C -0.122 4.122 21 C -0.162 4.162 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.150 4.150 29 H 0.071 0.929 30 H -0.005 1.005 31 H 0.022 0.978 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.245 0.755 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.144 0.856 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.159 0.841 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.851 -17.103 9.131 19.476 hybrid contribution 0.096 1.545 -0.599 1.660 sum 1.947 -15.559 8.532 17.851 Atomic orbital electron populations 1.70122 1.07804 1.27580 1.51661 1.25934 0.95649 1.03202 0.94729 0.85439 0.79186 0.78980 0.77688 1.18485 1.20840 1.20199 1.21678 0.93534 0.92107 1.50459 0.92011 1.18927 0.93969 0.92620 0.94838 1.21708 0.97932 0.91395 1.02168 1.19746 0.91297 0.93289 0.86953 0.92541 1.45853 1.27076 1.48509 1.13438 1.19974 0.79753 0.77338 0.89048 1.90627 1.69507 1.48860 1.38086 1.22390 1.04920 0.95576 0.96847 1.23190 0.97376 0.92204 1.00664 1.23457 0.89020 1.00828 1.01990 0.88471 1.21968 0.97350 0.92620 1.00238 1.23045 0.94094 0.97348 1.01736 1.22342 0.96818 0.93001 1.00060 1.20234 0.97781 0.97072 0.94885 1.21083 0.96547 0.97811 0.97973 1.21452 0.97934 0.95766 0.98845 1.21496 0.99894 1.00534 0.92449 1.21379 0.96185 0.96440 1.00186 1.21170 0.99490 0.97363 0.96974 0.92896 1.00549 0.97803 0.91034 0.91814 0.75455 0.88704 0.84807 0.90441 0.88374 0.93783 0.89058 0.87859 0.92796 0.85626 0.83422 0.83224 0.84068 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.76 4.86 29.85 0.15 1.90 16 10 C -0.09 -3.86 4.67 30.59 0.14 -3.72 16 11 C 0.19 7.27 2.17 44.25 0.10 7.37 16 12 H 0.06 2.51 7.44 -2.39 -0.02 2.49 16 13 N -0.70 -24.16 3.60 -446.10 -1.61 -25.77 16 14 C 0.55 19.87 7.37 87.66 0.65 20.52 16 15 O -0.59 -26.01 16.45 -3.05 -0.05 -26.06 16 16 C -0.19 -5.26 2.64 -52.20 -0.14 -5.39 16 17 C -0.10 -1.95 9.85 30.59 0.30 -1.65 16 18 C -0.13 -3.20 6.54 -10.07 -0.07 -3.27 16 19 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 20 C -0.08 -1.58 6.63 31.67 0.21 -1.37 16 21 C -0.12 -2.83 6.96 32.66 0.23 -2.60 16 22 C -0.08 -2.07 6.34 32.44 0.21 -1.86 16 23 C -0.10 -3.24 4.91 -19.87 -0.10 -3.34 16 24 C -0.12 -3.21 9.33 22.27 0.21 -3.00 16 25 C -0.12 -2.76 10.05 22.27 0.22 -2.53 16 26 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 27 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 28 C -0.13 -4.12 9.67 22.27 0.22 -3.90 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 31 H 0.00 0.20 7.75 -2.38 -0.02 0.18 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.41 12.61 8.07 -92.71 -0.75 11.86 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.62 7.56 -2.39 -0.02 1.61 16 43 H 0.13 3.16 7.72 -2.91 -0.02 3.13 16 44 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.11 3.55 8.04 -2.91 -0.02 3.53 16 Total: -1.00 -73.07 387.21 4.31 -68.75 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.20 Total: 31.10 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.46 Total: -37.65 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.32 Total: -82.12 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.07 4.31 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421572775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.933 kcal (2) G-P(sol) polarization free energy of solvation -73.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds