Wall clock time and date at job start Fri Apr 10 2020 22:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37757 * 119.86249 * 2 1 4 4 C 1.39381 * 119.60214 * 179.97438 * 3 2 1 5 5 C 1.46785 * 134.35130 * 180.02562 * 4 3 2 6 6 C 1.33989 * 106.18404 * 180.02562 * 5 4 3 7 7 C 1.50704 * 124.92202 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46367 * 20.38987 * 7 6 5 9 9 C 1.52999 * 109.46832 * 260.39425 * 7 6 5 10 10 N 1.46893 * 109.47428 * 140.38700 * 7 6 5 11 11 C 1.46896 * 110.99988 * 205.56233 * 10 7 6 12 12 C 1.53002 * 109.47090 * 174.44916 * 11 10 7 13 13 C 1.50696 * 115.55066 * 39.52047 * 12 11 10 14 14 H 1.08009 * 119.99587 * 265.11328 * 13 12 11 15 15 C 1.37873 * 120.00456 * 85.11090 * 13 12 11 16 16 N 1.31509 * 120.00059 * 184.05154 * 15 13 12 17 17 Si 1.86802 * 119.99685 * 4.05590 * 15 13 12 18 18 H 1.48493 * 109.47373 * 93.38996 * 17 15 13 19 19 H 1.48505 * 109.46935 * 213.39331 * 17 15 13 20 20 H 1.48501 * 109.47056 * 333.38642 * 17 15 13 21 21 C 1.53006 * 117.50084 * 253.81017 * 12 11 10 22 22 C 1.52996 * 60.00051 * 252.51185 * 21 12 11 23 23 O 1.34441 * 110.16453 * 0.22597 * 6 5 4 24 24 C 1.34838 * 110.89422 * 359.61551 * 23 6 5 25 25 C 1.38883 * 133.41596 * 180.11087 * 24 23 6 26 26 C 1.37866 * 119.95438 * 180.29357 * 25 24 23 27 27 C 1.50693 * 119.65660 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47114 * 269.97983 * 1 2 3 29 29 H 1.09003 * 109.46557 * 29.98000 * 1 2 3 30 30 H 1.08996 * 109.46973 * 149.98246 * 1 2 3 31 31 H 1.07998 * 120.20086 * 0.02562 * 3 2 1 32 32 H 1.08000 * 126.90985 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.46941 * 304.76446 * 9 7 6 34 34 H 1.08992 * 109.47719 * 64.77418 * 9 7 6 35 35 H 1.09000 * 109.46942 * 184.77198 * 9 7 6 36 36 H 1.00897 * 110.99623 * 81.61679 * 10 7 6 37 37 H 1.08998 * 109.47986 * 294.44840 * 11 10 7 38 38 H 1.09001 * 109.47023 * 54.45180 * 11 10 7 39 39 H 0.97004 * 119.99666 * 180.02562 * 16 15 13 40 40 H 1.08997 * 117.49680 * 359.97438 * 21 12 11 41 41 H 1.08998 * 117.50014 * 145.02121 * 21 12 11 42 42 H 1.09001 * 117.49616 * 252.51049 * 22 21 12 43 43 H 1.09004 * 117.52549 * 107.48019 * 22 21 12 44 44 H 1.07990 * 120.02928 * 0.26367 * 25 24 23 45 45 H 1.08998 * 109.47604 * 89.99312 * 27 26 25 46 46 H 1.08997 * 109.47264 * 209.99766 * 27 26 25 47 47 H 1.09006 * 109.46859 * 329.99224 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1930 1.1947 0.0000 4 6 3.5868 1.1883 0.0005 5 6 4.6177 2.2333 0.0012 6 6 5.7960 1.5954 0.0009 7 6 7.1429 2.2714 0.0008 8 1 7.0355 3.2953 0.3591 9 6 7.7064 2.2852 -1.4215 10 7 8.0593 1.5374 0.8836 11 6 9.1184 2.4187 1.3929 12 6 9.9684 1.6580 2.4127 13 6 10.2585 0.2189 2.0725 14 1 9.6307 -0.5664 2.4672 15 6 11.3251 -0.0954 1.2574 16 7 11.5312 -1.3429 0.8958 17 14 12.4777 1.2508 0.6669 18 1 13.6314 1.3575 1.5956 19 1 12.9678 0.9204 -0.6955 20 1 11.7500 2.5448 0.6307 21 6 9.7848 2.0121 3.8898 22 6 11.0544 2.4419 3.1522 23 8 5.6028 0.2650 -0.0048 24 6 4.2870 -0.0299 -0.0001 25 6 3.5762 -1.2231 -0.0007 26 6 2.1977 -1.2031 -0.0009 27 6 1.4332 -2.5017 -0.0010 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6540 2.1305 0.0004 32 1 4.4584 3.3015 0.0017 33 1 7.7344 1.2676 -1.8111 34 1 7.0710 2.9007 -2.0582 35 1 8.7155 2.6971 -1.4085 36 1 8.4513 0.7362 0.4120 37 1 9.7489 2.7449 0.5658 38 1 8.6684 3.2884 1.8717 39 1 12.2819 -1.5640 0.3227 40 1 9.0589 2.7872 4.1351 41 1 9.8738 1.2040 4.6159 42 1 11.9786 1.9165 3.3929 43 1 11.1638 3.4994 2.9118 44 1 4.1029 -2.1658 -0.0016 45 1 1.2488 -2.8150 1.0266 46 1 0.4820 -2.3633 -0.5149 47 1 2.0159 -3.2663 -0.5149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430749837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:23 Heat of formation + Delta-G solvation = 46.144001 kcal Electronic energy + Delta-G solvation = -25661.951609 eV Core-core repulsion = 22197.488895 eV Total energy + Delta-G solvation = -3464.462714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23152 -38.63684 -37.54689 -35.61531 -33.22972 -32.13622 -32.07288 -31.14570 -29.33330 -27.10404 -26.30170 -25.78720 -24.50406 -22.63506 -21.80302 -21.55298 -21.20504 -19.85849 -18.94567 -17.13709 -16.36785 -16.11627 -15.85307 -15.25639 -14.95901 -14.83327 -14.41955 -14.20360 -14.01745 -13.92293 -13.62648 -13.08732 -12.95571 -12.80535 -12.70930 -12.48415 -12.37077 -12.28307 -12.16173 -11.80798 -11.55262 -11.39727 -11.35628 -11.18118 -11.06909 -10.78429 -10.69388 -10.41283 -10.07284 -9.80872 -9.46610 -9.03361 -8.63444 -8.40753 -8.26769 -7.89077 -7.64587 -6.08662 -4.09805 1.01649 1.41775 2.54514 2.95338 3.27054 3.37319 3.40870 3.71404 4.33917 4.42130 4.69516 4.71947 4.80041 4.97901 5.02302 5.08678 5.17827 5.21277 5.24448 5.33157 5.36047 5.39500 5.47466 5.55322 5.58075 5.68888 5.73868 5.78340 5.84496 5.88395 5.96805 6.01844 6.09439 6.17831 6.25388 6.31288 6.33685 6.40031 6.51208 6.54649 6.55950 6.59975 6.77698 6.80202 7.01908 7.17695 7.44445 7.73029 7.81688 8.15645 8.58486 8.99921 9.54400 11.02882 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.003125 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.250093 B = 8956.515926 C = 9308.240205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.076 4.076 4 C -0.123 4.123 5 C -0.232 4.232 6 C 0.086 3.914 7 C 0.150 3.850 8 H 0.103 0.897 9 C -0.183 4.183 10 N -0.664 5.664 11 C 0.097 3.903 12 C 0.009 3.991 13 C -0.476 4.476 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.897 5.897 17 Si 0.873 3.127 18 H -0.281 1.281 19 H -0.296 1.296 20 H -0.256 1.256 21 C -0.175 4.175 22 C -0.206 4.206 23 O -0.174 6.174 24 C 0.052 3.948 25 C -0.102 4.102 26 C -0.070 4.070 27 C -0.113 4.113 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.153 0.847 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.367 0.633 37 H 0.025 0.975 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.801 5.642 -4.453 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.252 4.252 6 C 0.036 3.964 7 C 0.039 3.961 8 H 0.120 0.880 9 C -0.242 4.242 10 N -0.297 5.297 11 C -0.032 4.032 12 C 0.008 3.992 13 C -0.513 4.513 14 H 0.098 0.902 15 C -0.127 4.127 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.181 1.181 21 C -0.213 4.213 22 C -0.244 4.244 23 O -0.074 6.074 24 C 0.004 3.996 25 C -0.120 4.120 26 C -0.071 4.071 27 C -0.170 4.170 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.170 0.830 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.190 0.810 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.848 5.358 -4.008 20.000 hybrid contribution 1.399 0.951 -1.039 1.986 sum -17.448 6.309 -5.047 19.228 Atomic orbital electron populations 1.20785 0.91088 1.02613 1.02190 1.19517 0.95890 0.92136 1.03270 1.20269 0.91348 0.97603 1.00201 1.19872 0.94218 0.92831 1.05474 1.22042 0.90089 0.99166 1.13864 1.22531 0.96644 0.79970 0.97230 1.20252 0.86796 0.96206 0.92877 0.87951 1.22552 1.01644 1.03201 0.96758 1.60402 1.20661 1.09911 1.38740 1.21642 0.91212 0.93540 0.96839 1.19341 0.95193 0.95493 0.89177 1.20268 1.12741 0.88692 1.29643 0.90181 1.24993 0.97274 0.95021 0.95453 1.69910 1.30033 1.17619 1.35880 0.86956 0.81784 0.83637 0.77469 1.20669 1.22350 1.18052 1.22800 0.98706 1.02030 0.97725 1.22986 0.94207 0.98563 1.08659 1.84086 1.23681 1.24492 1.75127 1.19614 0.81703 0.95432 1.02867 1.19744 0.92378 0.95047 1.04848 1.19379 0.92003 0.95176 1.00498 1.20834 0.99821 0.93768 1.02536 0.91364 0.91837 0.91222 0.85915 0.82974 0.91604 0.92084 0.91342 0.81014 0.95746 0.93186 0.92706 0.91128 0.89821 0.89705 0.91254 0.85106 0.90979 0.91031 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.59 36.01 0.35 -0.52 16 2 C -0.11 -1.23 5.88 -104.61 -0.61 -1.85 16 3 C -0.08 -0.96 9.74 -39.33 -0.38 -1.35 16 4 C -0.12 -1.87 6.40 -105.16 -0.67 -2.54 16 5 C -0.23 -3.41 10.99 -37.62 -0.41 -3.83 16 6 C 0.09 1.41 6.08 -35.80 -0.22 1.20 16 7 C 0.15 2.37 3.02 -68.87 -0.21 2.16 16 8 H 0.10 1.42 7.68 -51.93 -0.40 1.02 16 9 C -0.18 -2.61 9.16 37.16 0.34 -2.27 16 10 N -0.66 -13.06 5.97 -107.96 -0.64 -13.70 16 11 C 0.10 1.93 5.45 -3.83 -0.02 1.91 16 12 C 0.01 0.21 1.19 -155.66 -0.19 0.02 16 13 C -0.48 -12.86 8.07 -34.44 -0.28 -13.14 16 14 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 17 Si 0.87 21.08 25.15 -169.99 -4.28 16.80 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.26 -5.78 5.27 56.52 0.30 -5.48 16 21 C -0.18 -3.63 9.88 -26.73 -0.26 -3.90 16 22 C -0.21 -4.36 7.39 -26.73 -0.20 -4.56 16 23 O -0.17 -3.22 10.55 3.85 0.04 -3.18 16 24 C 0.05 0.86 7.41 -38.49 -0.29 0.57 16 25 C -0.10 -1.45 9.69 -39.48 -0.38 -1.83 16 26 C -0.07 -0.84 5.88 -104.58 -0.61 -1.45 16 27 C -0.11 -0.96 9.58 36.00 0.34 -0.61 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.46 5.91 -51.93 -0.31 0.15 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 36 H 0.37 8.09 7.46 -39.29 -0.29 7.80 16 37 H 0.02 0.49 5.98 -51.93 -0.31 0.18 16 38 H 0.05 0.90 7.72 -51.93 -0.40 0.50 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 42 H 0.08 1.89 7.14 -51.93 -0.37 1.52 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.49 5.91 -51.93 -0.31 0.18 16 47 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -30.42 374.92 -9.76 -40.18 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.50 Total: 10.17 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -3.81 Total: -30.02 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.13 Total: -39.60 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.28 Total: 16.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.42 -9.76 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.328 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds