Wall clock time and date at job start Fri Apr 10 2020 22:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37757 * 119.86249 * 2 1 4 4 C 1.39381 * 119.60214 * 179.97438 * 3 2 1 5 5 C 1.46785 * 134.35130 * 180.02562 * 4 3 2 6 6 C 1.33989 * 106.18404 * 180.02562 * 5 4 3 7 7 C 1.50704 * 124.92202 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46367 * 20.38987 * 7 6 5 9 9 C 1.52999 * 109.46832 * 260.39425 * 7 6 5 10 10 N 1.46893 * 109.47428 * 140.38700 * 7 6 5 11 11 C 1.46896 * 110.99988 * 205.56233 * 10 7 6 12 12 C 1.53002 * 109.47090 * 174.44916 * 11 10 7 13 13 C 1.50696 * 115.55066 * 39.52047 * 12 11 10 14 14 H 1.08009 * 119.99587 * 265.11328 * 13 12 11 15 15 C 1.37873 * 120.00456 * 85.11090 * 13 12 11 16 16 N 1.31509 * 120.00059 * 184.05154 * 15 13 12 17 17 Si 1.86802 * 119.99685 * 4.05590 * 15 13 12 18 18 H 1.48493 * 109.47373 * 93.38996 * 17 15 13 19 19 H 1.48505 * 109.46935 * 213.39331 * 17 15 13 20 20 H 1.48501 * 109.47056 * 333.38642 * 17 15 13 21 21 C 1.53006 * 117.50084 * 253.81017 * 12 11 10 22 22 C 1.52996 * 60.00051 * 252.51185 * 21 12 11 23 23 O 1.34441 * 110.16453 * 0.22597 * 6 5 4 24 24 C 1.34838 * 110.89422 * 359.61551 * 23 6 5 25 25 C 1.38883 * 133.41596 * 180.11087 * 24 23 6 26 26 C 1.37866 * 119.95438 * 180.29357 * 25 24 23 27 27 C 1.50693 * 119.65660 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47114 * 269.97983 * 1 2 3 29 29 H 1.09003 * 109.46557 * 29.98000 * 1 2 3 30 30 H 1.08996 * 109.46973 * 149.98246 * 1 2 3 31 31 H 1.07998 * 120.20086 * 0.02562 * 3 2 1 32 32 H 1.08000 * 126.90985 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.46941 * 304.76446 * 9 7 6 34 34 H 1.08992 * 109.47719 * 64.77418 * 9 7 6 35 35 H 1.09000 * 109.46942 * 184.77198 * 9 7 6 36 36 H 1.00897 * 110.99623 * 81.61679 * 10 7 6 37 37 H 1.08998 * 109.47986 * 294.44840 * 11 10 7 38 38 H 1.09001 * 109.47023 * 54.45180 * 11 10 7 39 39 H 0.97004 * 119.99666 * 180.02562 * 16 15 13 40 40 H 1.08997 * 117.49680 * 359.97438 * 21 12 11 41 41 H 1.08998 * 117.50014 * 145.02121 * 21 12 11 42 42 H 1.09001 * 117.49616 * 252.51049 * 22 21 12 43 43 H 1.09004 * 117.52549 * 107.48019 * 22 21 12 44 44 H 1.07990 * 120.02928 * 0.26367 * 25 24 23 45 45 H 1.08998 * 109.47604 * 89.99312 * 27 26 25 46 46 H 1.08997 * 109.47264 * 209.99766 * 27 26 25 47 47 H 1.09006 * 109.46859 * 329.99224 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1930 1.1947 0.0000 4 6 3.5868 1.1883 0.0005 5 6 4.6177 2.2333 0.0012 6 6 5.7960 1.5954 0.0009 7 6 7.1429 2.2714 0.0008 8 1 7.0355 3.2953 0.3591 9 6 7.7064 2.2852 -1.4215 10 7 8.0593 1.5374 0.8836 11 6 9.1184 2.4187 1.3929 12 6 9.9684 1.6580 2.4127 13 6 10.2585 0.2189 2.0725 14 1 9.6307 -0.5664 2.4672 15 6 11.3251 -0.0954 1.2574 16 7 11.5312 -1.3429 0.8958 17 14 12.4777 1.2508 0.6669 18 1 13.6314 1.3575 1.5956 19 1 12.9678 0.9204 -0.6955 20 1 11.7500 2.5448 0.6307 21 6 9.7848 2.0121 3.8898 22 6 11.0544 2.4419 3.1522 23 8 5.6028 0.2650 -0.0048 24 6 4.2870 -0.0299 -0.0001 25 6 3.5762 -1.2231 -0.0007 26 6 2.1977 -1.2031 -0.0009 27 6 1.4332 -2.5017 -0.0010 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6540 2.1305 0.0004 32 1 4.4584 3.3015 0.0017 33 1 7.7344 1.2676 -1.8111 34 1 7.0710 2.9007 -2.0582 35 1 8.7155 2.6971 -1.4085 36 1 8.4513 0.7362 0.4120 37 1 9.7489 2.7449 0.5658 38 1 8.6684 3.2884 1.8717 39 1 12.2819 -1.5640 0.3227 40 1 9.0589 2.7872 4.1351 41 1 9.8738 1.2040 4.6159 42 1 11.9786 1.9165 3.3929 43 1 11.1638 3.4994 2.9118 44 1 4.1029 -2.1658 -0.0016 45 1 1.2488 -2.8150 1.0266 46 1 0.4820 -2.3633 -0.5149 47 1 2.0159 -3.2663 -0.5149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430749837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:22 Heat of formation + Delta-G solvation = 28.794409 kcal Electronic energy + Delta-G solvation = -25662.703944 eV Core-core repulsion = 22197.488895 eV Total energy + Delta-G solvation = -3465.215049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37528 -39.65071 -39.12694 -37.04847 -34.27545 -34.20389 -33.07308 -32.29730 -30.50412 -27.94221 -27.82285 -27.25483 -26.00956 -23.70946 -23.24322 -22.88724 -22.32774 -21.06185 -20.69021 -18.36391 -18.08524 -17.38033 -17.04096 -16.80018 -16.40985 -16.06406 -15.63973 -15.42442 -15.21020 -15.01306 -14.86423 -14.74700 -14.19886 -13.93445 -13.86165 -13.64632 -13.56224 -13.34599 -13.21586 -13.05506 -12.92793 -12.64206 -12.56928 -12.39709 -12.29862 -12.16472 -12.08141 -11.87630 -11.76508 -11.34727 -10.97150 -10.88976 -10.57991 -10.22075 -9.28740 -9.17205 -8.92958 -8.24554 -6.29487 -0.03248 0.38505 1.35371 1.38193 1.41381 1.50599 1.85785 2.38793 2.69460 3.02095 3.13846 3.34137 3.62533 3.75713 3.91464 3.99070 4.07321 4.10111 4.19602 4.21925 4.29579 4.36863 4.40655 4.50971 4.63278 4.68145 4.69595 4.73319 4.77180 4.77792 4.82999 4.89654 4.90824 4.94832 4.98464 5.09728 5.13098 5.16662 5.26994 5.29690 5.33827 5.37506 5.51912 5.54498 5.65667 5.76877 5.87471 6.23933 6.34047 6.44352 6.52198 6.80632 7.37711 8.91289 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.003125 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.250093 B = 8956.515926 C = 9308.240205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C -0.079 4.079 4 C -0.144 4.144 5 C -0.216 4.216 6 C 0.052 3.948 7 C 0.153 3.847 8 H 0.130 0.870 9 C -0.176 4.176 10 N -0.682 5.682 11 C 0.104 3.896 12 C -0.020 4.020 13 C -0.467 4.467 14 H 0.023 0.977 15 C 0.019 3.981 16 N -0.951 5.951 17 Si 0.936 3.064 18 H -0.278 1.278 19 H -0.302 1.302 20 H -0.222 1.222 21 C -0.167 4.167 22 C -0.195 4.195 23 O -0.211 6.211 24 C 0.013 3.987 25 C -0.130 4.130 26 C -0.066 4.066 27 C -0.113 4.113 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.184 0.816 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.345 0.655 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.237 9.153 -4.667 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.097 4.097 4 C -0.144 4.144 5 C -0.236 4.236 6 C 0.004 3.996 7 C 0.043 3.957 8 H 0.148 0.852 9 C -0.234 4.234 10 N -0.314 5.314 11 C -0.025 4.025 12 C -0.021 4.021 13 C -0.506 4.506 14 H 0.041 0.959 15 C -0.178 4.178 16 N -0.591 5.591 17 Si 0.761 3.239 18 H -0.204 1.204 19 H -0.230 1.230 20 H -0.145 1.145 21 C -0.204 4.204 22 C -0.232 4.232 23 O -0.113 6.113 24 C -0.033 4.033 25 C -0.149 4.149 26 C -0.066 4.066 27 C -0.169 4.169 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.202 0.798 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.145 0.855 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.317 8.906 -4.201 23.482 hybrid contribution 1.948 -0.294 -0.903 2.167 sum -19.370 8.612 -5.103 21.803 Atomic orbital electron populations 1.20875 0.87994 1.04191 1.03381 1.20031 0.98052 0.91381 1.01313 1.20679 0.90396 0.99370 0.99250 1.20194 0.95489 0.92274 1.06488 1.22424 0.89137 1.00422 1.11572 1.22779 0.97599 0.79604 0.99601 1.20400 0.85616 0.96769 0.92920 0.85209 1.22476 1.02161 1.02339 0.96462 1.60345 1.20902 1.09934 1.40178 1.21575 0.91039 0.93765 0.96078 1.19360 0.97791 0.93527 0.91393 1.20305 1.11339 0.90297 1.28610 0.95873 1.25801 0.99055 0.97170 0.95765 1.70078 1.31139 1.20296 1.37629 0.85953 0.79548 0.82044 0.76357 1.20413 1.22967 1.14462 1.22836 0.99455 1.02220 0.95903 1.23018 0.93182 0.99879 1.07138 1.84018 1.25134 1.25971 1.76207 1.20138 0.81425 0.97129 1.04657 1.20037 0.93724 0.94529 1.06563 1.19858 0.91152 0.97242 0.98320 1.20938 1.00391 0.91990 1.03581 0.90170 0.90375 0.89639 0.83174 0.79830 0.93920 0.89368 0.91260 0.83500 0.95607 0.90155 0.92882 0.87970 0.91466 0.91239 0.87755 0.85501 0.89903 0.88635 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.59 71.24 0.68 -0.61 16 2 C -0.11 -2.22 5.88 -19.86 -0.12 -2.34 16 3 C -0.08 -1.85 9.74 22.43 0.22 -1.63 16 4 C -0.14 -4.32 6.40 -20.21 -0.13 -4.45 16 5 C -0.22 -6.13 10.99 23.54 0.26 -5.87 16 6 C 0.05 1.76 6.08 24.72 0.15 1.91 16 7 C 0.15 4.73 3.02 44.17 0.13 4.86 16 8 H 0.13 3.22 7.68 -2.39 -0.02 3.20 16 9 C -0.18 -4.93 9.16 71.98 0.66 -4.27 16 10 N -0.68 -27.20 5.97 -495.46 -2.96 -30.16 16 11 C 0.10 3.96 5.45 86.30 0.47 4.43 16 12 C -0.02 -0.88 1.19 -52.93 -0.06 -0.94 16 13 C -0.47 -26.45 8.07 25.60 0.21 -26.24 16 14 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 15 C 0.02 1.08 5.47 84.65 0.46 1.54 16 16 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 17 Si 0.94 43.72 25.15 68.60 1.73 45.45 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.22 -9.08 5.27 99.48 0.52 -8.56 16 21 C -0.17 -6.64 9.88 30.59 0.30 -6.34 16 22 C -0.19 -7.69 7.39 30.59 0.23 -7.46 16 23 O -0.21 -8.43 10.55 -9.15 -0.10 -8.53 16 24 C 0.01 0.47 7.41 22.98 0.17 0.64 16 25 C -0.13 -3.91 9.69 22.34 0.22 -3.69 16 26 C -0.07 -1.50 5.88 -19.84 -0.12 -1.62 16 27 C -0.11 -1.70 9.58 71.23 0.68 -1.02 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.08 0.77 5.91 -2.39 -0.01 0.75 16 31 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.91 7.49 -2.39 -0.02 1.89 16 36 H 0.35 16.17 7.46 -89.70 -0.67 15.50 16 37 H 0.03 0.97 5.98 -2.39 -0.01 0.95 16 38 H 0.08 2.56 7.72 -2.39 -0.02 2.54 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.10 3.42 8.08 -2.39 -0.02 3.40 16 41 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.07 2.96 7.14 -2.39 -0.02 2.95 16 43 H 0.10 3.43 8.14 -2.38 -0.02 3.42 16 44 H 0.13 3.67 8.06 -2.92 -0.02 3.65 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 0.99 5.91 -2.39 -0.01 0.97 16 47 H 0.07 1.03 8.08 -2.38 -0.02 1.01 16 Total: -1.00 -72.05 374.92 3.50 -68.55 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.12 Total: 37.29 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 4.42 Total: -53.09 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -2.66 Total: -89.67 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.10 Total: -8.53 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.73 Total: 45.45 kcal Total: -72.05 3.50 -68.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.341 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds