Wall clock time and date at job start Fri Apr 10 2020 22:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37765 * 119.86007 * 2 1 4 4 C 1.39379 * 119.59824 * 179.97438 * 3 2 1 5 5 C 1.46789 * 134.34404 * 180.25129 * 4 3 2 6 6 C 1.33988 * 106.18612 * 180.11157 * 5 4 3 7 7 C 1.50696 * 124.92008 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47246 * 339.71904 * 7 6 5 9 9 C 1.53001 * 109.47154 * 99.72487 * 7 6 5 10 10 N 1.46898 * 109.46968 * 219.72163 * 7 6 5 11 11 C 1.46902 * 110.99958 * 155.00180 * 10 7 6 12 12 C 1.53004 * 109.47263 * 175.35376 * 11 10 7 13 13 C 1.50694 * 115.55840 * 320.88517 * 12 11 10 14 14 H 1.08000 * 120.00068 * 99.73287 * 13 12 11 15 15 C 1.37878 * 120.00434 * 279.72613 * 13 12 11 16 16 N 1.31526 * 119.99673 * 8.11751 * 15 13 12 17 17 Si 1.86795 * 120.00465 * 188.11120 * 15 13 12 18 18 H 1.48499 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47211 * 120.00185 * 17 15 13 20 20 H 1.48501 * 109.47061 * 240.00344 * 17 15 13 21 21 C 1.52994 * 117.49645 * 175.19806 * 12 11 10 22 22 C 1.53000 * 60.03089 * 252.49744 * 21 12 11 23 23 O 1.34446 * 110.15790 * 359.65480 * 6 5 4 24 24 C 1.34832 * 110.89926 * 0.22955 * 23 6 5 25 25 C 1.38881 * 133.42535 * 179.97438 * 24 23 6 26 26 C 1.37859 * 119.96014 * 180.02562 * 25 24 23 27 27 C 1.50701 * 119.65503 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47274 * 270.01533 * 1 2 3 29 29 H 1.09002 * 109.47396 * 30.01720 * 1 2 3 30 30 H 1.09002 * 109.46967 * 150.01959 * 1 2 3 31 31 H 1.07998 * 120.19812 * 359.96283 * 3 2 1 32 32 H 1.08004 * 126.90768 * 359.97438 * 5 4 3 33 33 H 1.08993 * 109.47174 * 180.02562 * 9 7 6 34 34 H 1.09007 * 109.46566 * 299.99631 * 9 7 6 35 35 H 1.08997 * 109.47194 * 59.99184 * 9 7 6 36 36 H 1.00902 * 111.00162 * 31.04929 * 10 7 6 37 37 H 1.08996 * 109.47411 * 55.35168 * 11 10 7 38 38 H 1.09001 * 109.47159 * 295.35364 * 11 10 7 39 39 H 0.96992 * 119.99670 * 179.97438 * 16 15 13 40 40 H 1.08993 * 117.50534 * 359.97438 * 21 12 11 41 41 H 1.09004 * 117.49792 * 145.00178 * 21 12 11 42 42 H 1.08995 * 117.49677 * 107.50778 * 22 21 12 43 43 H 1.09003 * 117.50034 * 252.52677 * 22 21 12 44 44 H 1.08005 * 120.02177 * 0.02562 * 25 24 23 45 45 H 1.08999 * 109.47011 * 90.00446 * 27 26 25 46 46 H 1.08994 * 109.47711 * 210.00361 * 27 26 25 47 47 H 1.09004 * 109.47283 * 330.00680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1948 0.0000 4 6 3.5867 1.1884 0.0005 5 6 4.6175 2.2335 0.0053 6 6 5.7959 1.5958 0.0006 7 6 7.1427 2.2720 0.0025 8 1 7.0344 3.2983 -0.3483 9 6 7.7095 2.2757 1.4236 10 7 8.0571 1.5442 -0.8874 11 6 9.1228 2.4259 -1.3824 12 6 10.1176 1.6091 -2.2095 13 6 10.4300 0.2339 -1.6783 14 1 9.9438 -0.6322 -2.1026 15 6 11.3366 0.0812 -0.6508 16 7 11.8081 1.1389 -0.0273 17 14 11.8951 -1.6278 -0.1441 18 1 11.2222 -2.6412 -0.9958 19 1 13.3664 -1.7381 -0.3129 20 1 11.5411 -1.8626 1.2789 21 6 11.2457 2.3690 -2.9099 22 6 10.0904 1.7904 -3.7292 23 8 5.6027 0.2653 0.0011 24 6 4.2871 -0.0297 0.0010 25 6 3.5762 -1.2228 0.0009 26 6 2.1978 -1.2029 0.0003 27 6 1.4333 -2.5016 -0.0004 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6539 2.1306 -0.0006 32 1 4.4581 3.3017 0.0093 33 1 8.6833 2.7652 1.4251 34 1 7.0308 2.8158 2.0840 35 1 7.8176 1.2494 1.7744 36 1 7.5552 1.1190 -1.6525 37 1 9.6399 2.8806 -0.5375 38 1 8.6877 3.2074 -2.0053 39 1 12.4456 1.0315 0.6958 40 1 11.2791 3.4509 -2.7818 41 1 12.2141 1.8744 -2.9862 42 1 9.3640 2.4915 -4.1398 43 1 10.2986 0.9148 -4.3442 44 1 4.1030 -2.1657 0.0012 45 1 1.2485 -2.8150 1.0271 46 1 0.4823 -2.3633 -0.5146 47 1 2.0163 -3.2661 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430749839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:25 Heat of formation + Delta-G solvation = 46.705009 kcal Electronic energy + Delta-G solvation = -25642.569713 eV Core-core repulsion = 22178.131325 eV Total energy + Delta-G solvation = -3464.438387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32188 -38.69588 -37.17560 -35.32303 -33.29269 -32.18062 -31.76409 -31.09922 -29.26965 -27.15844 -26.33085 -25.49498 -24.47350 -22.51782 -21.61742 -21.26690 -21.05800 -19.75700 -19.00029 -17.19614 -16.47732 -15.99236 -15.85932 -15.28053 -14.89570 -14.42825 -14.40369 -14.28746 -14.03083 -13.77801 -13.37617 -13.04213 -13.00789 -12.85118 -12.61465 -12.45865 -12.22887 -11.90851 -11.77772 -11.58157 -11.48705 -11.38199 -11.14059 -10.92189 -10.88828 -10.80041 -10.59351 -10.39118 -10.08258 -9.89208 -9.43232 -8.75200 -8.34167 -8.27805 -8.00934 -7.94621 -7.48200 -5.87118 -3.85799 0.93490 1.34486 2.45944 2.85731 3.39468 3.47602 3.51995 3.64151 4.34072 4.55946 4.64549 4.70162 4.82321 4.92608 4.97855 5.14913 5.25644 5.31633 5.37470 5.40373 5.45588 5.48754 5.52390 5.52576 5.63392 5.66489 5.69738 5.87570 5.95148 6.10842 6.19331 6.24105 6.26343 6.27956 6.37657 6.48982 6.51174 6.54115 6.60422 6.70964 6.75651 6.78746 6.96455 7.11001 7.35515 7.47291 7.47811 8.00247 8.05926 8.21563 8.61112 9.09483 9.76506 11.23830 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.003258 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.570253 B = 8592.404078 C = 9254.671329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.074 4.074 4 C -0.125 4.125 5 C -0.226 4.226 6 C 0.064 3.936 7 C 0.157 3.843 8 H 0.064 0.936 9 C -0.135 4.135 10 N -0.646 5.646 11 C 0.108 3.892 12 C 0.052 3.948 13 C -0.463 4.463 14 H 0.056 0.944 15 C 0.076 3.924 16 N -0.882 5.882 17 Si 0.884 3.116 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.286 1.286 21 C -0.164 4.164 22 C -0.218 4.218 23 O -0.171 6.171 24 C 0.051 3.949 25 C -0.102 4.102 26 C -0.069 4.069 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.336 0.664 37 H 0.077 0.923 38 H -0.006 1.006 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.131 0.869 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.445 0.612 1.394 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.246 4.246 6 C 0.015 3.985 7 C 0.047 3.953 8 H 0.082 0.918 9 C -0.193 4.193 10 N -0.277 5.277 11 C -0.020 4.020 12 C 0.051 3.949 13 C -0.501 4.501 14 H 0.074 0.926 15 C -0.126 4.126 16 N -0.519 5.519 17 Si 0.713 3.287 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.202 4.202 22 C -0.256 4.256 23 O -0.071 6.071 24 C 0.003 3.997 25 C -0.121 4.121 26 C -0.069 4.069 27 C -0.170 4.170 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.012 0.988 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.149 0.851 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.721 0.206 2.062 19.830 hybrid contribution -0.037 -0.094 -0.281 0.299 sum -19.758 0.111 1.780 19.839 Atomic orbital electron populations 1.20790 0.91016 1.02723 1.02188 1.19530 0.95950 0.92113 1.03176 1.20291 0.91326 0.97671 0.99960 1.19889 0.94262 0.92813 1.05636 1.22145 0.90143 0.99310 1.12975 1.22741 0.97050 0.80169 0.98565 1.20322 0.83887 0.93786 0.97330 0.91821 1.21785 1.00975 1.03217 0.93301 1.60363 1.11722 1.32738 1.22874 1.21561 0.91272 0.91451 0.97758 1.18872 0.93731 0.95871 0.86398 1.20171 1.22893 0.89778 1.17255 0.92556 1.24807 0.96273 0.95881 0.95625 1.70003 1.31218 1.28256 1.22469 0.86667 0.78040 0.85628 0.78361 1.19951 1.21485 1.21278 1.22553 0.94439 0.96965 1.06231 1.23075 1.02658 1.02017 0.97800 1.84124 1.23519 1.24292 1.75173 1.19641 0.81747 0.95454 1.02871 1.19736 0.92369 0.95000 1.04961 1.19391 0.92000 0.95208 1.00297 1.20840 0.99907 0.93751 1.02496 0.91360 0.91761 0.91171 0.85829 0.82833 0.90817 0.93344 0.91470 0.84565 0.90486 0.98834 0.93606 0.92098 0.90199 0.92081 0.90555 0.85090 0.91011 0.90950 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.59 36.01 0.35 -0.49 16 2 C -0.11 -1.18 5.88 -104.62 -0.61 -1.80 16 3 C -0.07 -0.91 9.74 -39.33 -0.38 -1.30 16 4 C -0.13 -1.85 6.40 -105.16 -0.67 -2.53 16 5 C -0.23 -3.30 10.99 -37.62 -0.41 -3.72 16 6 C 0.06 1.05 5.73 -35.80 -0.21 0.85 16 7 C 0.16 2.68 3.05 -68.87 -0.21 2.47 16 8 H 0.06 0.99 7.83 -51.93 -0.41 0.58 16 9 C -0.13 -2.30 9.39 37.16 0.35 -1.95 16 10 N -0.65 -13.24 5.56 -107.95 -0.60 -13.85 16 11 C 0.11 2.36 5.54 -3.82 -0.02 2.34 16 12 C 0.05 1.25 1.65 -155.63 -0.26 1.00 16 13 C -0.46 -12.52 8.12 -34.44 -0.28 -12.80 16 14 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 15 C 0.08 2.09 5.41 -17.81 -0.10 1.99 16 16 N -0.88 -24.78 13.19 55.43 0.73 -24.05 16 17 Si 0.88 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 C -0.16 -3.80 9.78 -26.73 -0.26 -4.06 16 22 C -0.22 -4.73 9.88 -26.70 -0.26 -5.00 16 23 O -0.17 -3.11 10.56 3.85 0.04 -3.07 16 24 C 0.05 0.82 7.41 -38.49 -0.29 0.53 16 25 C -0.10 -1.39 9.69 -39.48 -0.38 -1.77 16 26 C -0.07 -0.78 5.88 -104.58 -0.61 -1.40 16 27 C -0.11 -0.90 9.58 36.01 0.34 -0.56 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.44 5.91 -51.93 -0.31 0.14 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.07 1.34 7.39 -51.93 -0.38 0.96 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.34 6.87 8.40 -39.29 -0.33 6.54 16 37 H 0.08 1.82 7.34 -51.93 -0.38 1.44 16 38 H -0.01 -0.13 7.94 -51.93 -0.41 -0.54 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 42 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.47 5.91 -51.93 -0.31 0.16 16 47 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -29.57 386.16 -10.51 -40.09 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.56 Total: 6.53 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.92 Total: -28.18 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.13 Total: -37.90 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.57 -10.51 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.790 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds