Wall clock time and date at job start Fri Apr 10 2020 22:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37765 * 119.86007 * 2 1 4 4 C 1.39379 * 119.59824 * 179.97438 * 3 2 1 5 5 C 1.46789 * 134.34404 * 180.25129 * 4 3 2 6 6 C 1.33988 * 106.18612 * 180.11157 * 5 4 3 7 7 C 1.50696 * 124.92008 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47246 * 339.71904 * 7 6 5 9 9 C 1.53001 * 109.47154 * 99.72487 * 7 6 5 10 10 N 1.46898 * 109.46968 * 219.72163 * 7 6 5 11 11 C 1.46902 * 110.99958 * 155.00180 * 10 7 6 12 12 C 1.53004 * 109.47263 * 175.35376 * 11 10 7 13 13 C 1.50694 * 115.55840 * 320.88517 * 12 11 10 14 14 H 1.08000 * 120.00068 * 99.73287 * 13 12 11 15 15 C 1.37878 * 120.00434 * 279.72613 * 13 12 11 16 16 N 1.31526 * 119.99673 * 8.11751 * 15 13 12 17 17 Si 1.86795 * 120.00465 * 188.11120 * 15 13 12 18 18 H 1.48499 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47211 * 120.00185 * 17 15 13 20 20 H 1.48501 * 109.47061 * 240.00344 * 17 15 13 21 21 C 1.52994 * 117.49645 * 175.19806 * 12 11 10 22 22 C 1.53000 * 60.03089 * 252.49744 * 21 12 11 23 23 O 1.34446 * 110.15790 * 359.65480 * 6 5 4 24 24 C 1.34832 * 110.89926 * 0.22955 * 23 6 5 25 25 C 1.38881 * 133.42535 * 179.97438 * 24 23 6 26 26 C 1.37859 * 119.96014 * 180.02562 * 25 24 23 27 27 C 1.50701 * 119.65503 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47274 * 270.01533 * 1 2 3 29 29 H 1.09002 * 109.47396 * 30.01720 * 1 2 3 30 30 H 1.09002 * 109.46967 * 150.01959 * 1 2 3 31 31 H 1.07998 * 120.19812 * 359.96283 * 3 2 1 32 32 H 1.08004 * 126.90768 * 359.97438 * 5 4 3 33 33 H 1.08993 * 109.47174 * 180.02562 * 9 7 6 34 34 H 1.09007 * 109.46566 * 299.99631 * 9 7 6 35 35 H 1.08997 * 109.47194 * 59.99184 * 9 7 6 36 36 H 1.00902 * 111.00162 * 31.04929 * 10 7 6 37 37 H 1.08996 * 109.47411 * 55.35168 * 11 10 7 38 38 H 1.09001 * 109.47159 * 295.35364 * 11 10 7 39 39 H 0.96992 * 119.99670 * 179.97438 * 16 15 13 40 40 H 1.08993 * 117.50534 * 359.97438 * 21 12 11 41 41 H 1.09004 * 117.49792 * 145.00178 * 21 12 11 42 42 H 1.08995 * 117.49677 * 107.50778 * 22 21 12 43 43 H 1.09003 * 117.50034 * 252.52677 * 22 21 12 44 44 H 1.08005 * 120.02177 * 0.02562 * 25 24 23 45 45 H 1.08999 * 109.47011 * 90.00446 * 27 26 25 46 46 H 1.08994 * 109.47711 * 210.00361 * 27 26 25 47 47 H 1.09004 * 109.47283 * 330.00680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1948 0.0000 4 6 3.5867 1.1884 0.0005 5 6 4.6175 2.2335 0.0053 6 6 5.7959 1.5958 0.0006 7 6 7.1427 2.2720 0.0025 8 1 7.0344 3.2983 -0.3483 9 6 7.7095 2.2757 1.4236 10 7 8.0571 1.5442 -0.8874 11 6 9.1228 2.4259 -1.3824 12 6 10.1176 1.6091 -2.2095 13 6 10.4300 0.2339 -1.6783 14 1 9.9438 -0.6322 -2.1026 15 6 11.3366 0.0812 -0.6508 16 7 11.8081 1.1389 -0.0273 17 14 11.8951 -1.6278 -0.1441 18 1 11.2222 -2.6412 -0.9958 19 1 13.3664 -1.7381 -0.3129 20 1 11.5411 -1.8626 1.2789 21 6 11.2457 2.3690 -2.9099 22 6 10.0904 1.7904 -3.7292 23 8 5.6027 0.2653 0.0011 24 6 4.2871 -0.0297 0.0010 25 6 3.5762 -1.2228 0.0009 26 6 2.1978 -1.2029 0.0003 27 6 1.4333 -2.5016 -0.0004 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6539 2.1306 -0.0006 32 1 4.4581 3.3017 0.0093 33 1 8.6833 2.7652 1.4251 34 1 7.0308 2.8158 2.0840 35 1 7.8176 1.2494 1.7744 36 1 7.5552 1.1190 -1.6525 37 1 9.6399 2.8806 -0.5375 38 1 8.6877 3.2074 -2.0053 39 1 12.4456 1.0315 0.6958 40 1 11.2791 3.4509 -2.7818 41 1 12.2141 1.8744 -2.9862 42 1 9.3640 2.4915 -4.1398 43 1 10.2986 0.9148 -4.3442 44 1 4.1030 -2.1657 0.0012 45 1 1.2485 -2.8150 1.0271 46 1 0.4823 -2.3633 -0.5146 47 1 2.0163 -3.2661 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430749839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:24 Heat of formation + Delta-G solvation = 32.279570 kcal Electronic energy + Delta-G solvation = -25643.195247 eV Core-core repulsion = 22178.131325 eV Total energy + Delta-G solvation = -3465.063921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.44558 -39.65499 -38.86799 -36.87331 -34.30668 -33.85947 -33.07489 -32.28564 -30.54130 -27.95407 -27.62024 -27.27845 -26.03873 -23.56036 -22.93272 -22.71961 -22.37157 -21.04137 -20.75535 -18.36932 -17.95615 -17.44512 -17.17725 -16.56764 -16.25103 -16.06729 -15.82403 -15.34680 -15.09938 -14.98200 -14.92252 -14.38163 -14.08061 -13.91441 -13.66610 -13.56421 -13.38402 -13.24801 -13.09084 -12.91113 -12.89330 -12.74554 -12.55757 -12.35218 -12.31514 -12.25761 -12.17710 -11.92465 -11.79576 -11.34019 -10.92722 -10.70180 -10.32670 -9.86993 -9.31125 -9.03798 -9.01086 -7.98221 -6.00199 -0.08144 0.35884 1.33914 1.39880 1.43797 1.52461 1.75739 2.50818 2.67008 3.14027 3.32896 3.44346 3.57933 3.71595 3.90469 4.04440 4.04581 4.17026 4.21134 4.28487 4.37311 4.45857 4.53802 4.60188 4.70238 4.71931 4.76438 4.77806 4.79217 4.80026 4.88406 4.95392 4.97441 5.00602 5.14194 5.15469 5.22386 5.26468 5.29510 5.33271 5.36297 5.48164 5.62932 5.64516 5.68270 5.84063 5.91671 6.22851 6.38601 6.55840 6.68873 6.99154 7.63146 9.11525 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.003258 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.570253 B = 8592.404078 C = 9254.671329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.078 4.078 4 C -0.146 4.146 5 C -0.207 4.207 6 C 0.033 3.967 7 C 0.162 3.838 8 H 0.087 0.913 9 C -0.127 4.127 10 N -0.666 5.666 11 C 0.123 3.877 12 C 0.023 3.977 13 C -0.469 4.469 14 H 0.039 0.961 15 C 0.035 3.965 16 N -0.903 5.903 17 Si 0.933 3.067 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.289 1.289 21 C -0.167 4.167 22 C -0.194 4.194 23 O -0.205 6.205 24 C 0.018 3.982 25 C -0.127 4.127 26 C -0.062 4.062 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.182 0.818 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.334 0.666 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.253 0.747 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.132 0.868 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.731 1.073 1.029 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.096 4.096 4 C -0.147 4.147 5 C -0.226 4.226 6 C -0.014 4.014 7 C 0.052 3.948 8 H 0.104 0.896 9 C -0.185 4.185 10 N -0.297 5.297 11 C -0.006 4.006 12 C 0.022 3.978 13 C -0.507 4.507 14 H 0.057 0.943 15 C -0.164 4.164 16 N -0.542 5.542 17 Si 0.761 3.239 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.216 1.216 21 C -0.206 4.206 22 C -0.231 4.231 23 O -0.107 6.107 24 C -0.029 4.029 25 C -0.145 4.145 26 C -0.063 4.063 27 C -0.170 4.170 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.199 0.801 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.152 0.848 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.150 0.850 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.014 0.664 1.690 23.086 hybrid contribution 0.829 -0.308 -0.177 0.902 sum -22.185 0.356 1.513 22.239 Atomic orbital electron populations 1.20881 0.88041 1.04169 1.03436 1.20031 0.98041 0.91398 1.01240 1.20680 0.90368 0.99418 0.99096 1.20158 0.95456 0.92206 1.06867 1.22485 0.89298 1.00487 1.10323 1.22629 0.97218 0.80050 1.01544 1.20282 0.83754 0.94590 0.96132 0.89596 1.21710 1.00895 1.01545 0.94366 1.60223 1.12616 1.33699 1.23120 1.21273 0.91082 0.91562 0.96689 1.19005 0.95195 0.95179 0.88385 1.20329 1.22447 0.90892 1.17049 0.94250 1.25341 0.96729 0.98398 0.95967 1.70084 1.31787 1.29395 1.22886 0.85908 0.77747 0.82642 0.77634 1.19965 1.20937 1.21597 1.22480 0.93611 0.97532 1.06932 1.23065 1.01883 1.02061 0.96124 1.84045 1.25058 1.25307 1.76241 1.20139 0.81283 0.97069 1.04425 1.20041 0.93586 0.94538 1.06375 1.19874 0.91234 0.97177 0.97971 1.20948 1.00368 0.91951 1.03684 0.90031 0.90531 0.89619 0.83308 0.80094 0.92538 0.90349 0.94310 0.84808 0.92888 0.96633 0.93834 0.90632 0.92387 0.89256 0.90817 0.85025 0.89680 0.88790 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.59 71.24 0.68 -0.50 16 2 C -0.11 -2.05 5.88 -19.86 -0.12 -2.17 16 3 C -0.08 -1.73 9.74 22.43 0.22 -1.51 16 4 C -0.15 -4.21 6.40 -20.21 -0.13 -4.34 16 5 C -0.21 -5.82 10.99 23.54 0.26 -5.56 16 6 C 0.03 1.12 5.73 24.72 0.14 1.26 16 7 C 0.16 5.56 3.05 44.17 0.13 5.70 16 8 H 0.09 2.56 7.83 -2.39 -0.02 2.54 16 9 C -0.13 -4.45 9.39 71.98 0.68 -3.78 16 10 N -0.67 -27.90 5.56 -495.45 -2.76 -30.65 16 11 C 0.12 5.37 5.54 86.30 0.48 5.85 16 12 C 0.02 1.12 1.65 -52.91 -0.09 1.03 16 13 C -0.47 -25.96 8.12 25.60 0.21 -25.76 16 14 H 0.04 2.26 7.83 -2.91 -0.02 2.24 16 15 C 0.04 1.97 5.41 84.65 0.46 2.43 16 16 N -0.90 -51.98 13.19 21.45 0.28 -51.70 16 17 Si 0.93 45.72 29.54 68.60 2.03 47.75 16 18 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 C -0.17 -7.75 9.78 30.59 0.30 -7.45 16 22 C -0.19 -8.21 9.88 30.62 0.30 -7.91 16 23 O -0.20 -7.81 10.56 -9.13 -0.10 -7.91 16 24 C 0.02 0.59 7.41 22.98 0.17 0.76 16 25 C -0.13 -3.49 9.69 22.33 0.22 -3.28 16 26 C -0.06 -1.31 5.88 -19.84 -0.12 -1.42 16 27 C -0.11 -1.49 9.58 71.24 0.68 -0.81 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 30 H 0.09 0.69 5.91 -2.39 -0.01 0.67 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.06 2.13 7.39 -2.39 -0.02 2.11 16 34 H 0.08 2.20 8.14 -2.38 -0.02 2.19 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.33 14.02 8.40 -89.69 -0.75 13.26 16 37 H 0.05 2.56 7.34 -2.39 -0.02 2.54 16 38 H 0.02 0.61 7.94 -2.39 -0.02 0.59 16 39 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.09 3.27 8.08 -2.39 -0.02 3.25 16 43 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 0.84 5.91 -2.39 -0.01 0.83 16 47 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 Total: -1.00 -66.01 386.16 4.14 -61.86 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.21 Total: 28.09 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 4.48 Total: -47.44 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -2.47 Total: -82.35 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.10 Total: -7.91 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -66.01 4.14 -61.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.143 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds