Wall clock time and date at job start Fri Apr 10 2020 22:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.67823 * 2 1 4 4 O 1.21273 * 120.00485 * 114.69663 * 3 2 1 5 5 N 1.34777 * 119.99365 * 294.70303 * 3 2 1 6 6 C 1.46506 * 119.99802 * 184.76175 * 5 3 2 7 7 C 1.52998 * 109.47344 * 175.29133 * 6 5 3 8 8 C 1.50695 * 115.55012 * 282.51953 * 7 6 5 9 9 H 1.08001 * 120.00081 * 143.68360 * 8 7 6 10 10 C 1.37880 * 120.00197 * 323.68551 * 8 7 6 11 11 N 1.31513 * 119.99561 * 339.12360 * 10 8 7 12 12 Si 1.86800 * 120.00272 * 159.12667 * 10 8 7 13 13 H 1.48498 * 109.46891 * 89.99823 * 12 10 8 14 14 H 1.48504 * 109.47104 * 209.99901 * 12 10 8 15 15 H 1.48500 * 109.47155 * 329.99735 * 12 10 8 16 16 C 1.52995 * 117.49995 * 136.80942 * 7 6 5 17 17 C 1.53002 * 60.00260 * 252.51285 * 16 7 6 18 18 C 1.53312 * 109.70758 * 239.46777 * 2 1 3 19 19 C 1.52732 * 108.39461 * 170.44534 * 18 2 1 20 20 C 1.50635 * 110.58977 * 51.15476 * 19 18 2 21 21 C 1.38911 * 117.76141 * 162.30689 * 20 19 18 22 22 C 1.37932 * 120.54328 * 179.42556 * 21 20 19 23 23 C 1.38265 * 119.77082 * 359.97438 * 22 21 20 24 24 C 1.37935 * 119.77382 * 0.13088 * 23 22 21 25 25 C 1.37663 * 122.55389 * 341.97140 * 20 19 18 26 26 C 1.50629 * 122.55607 * 1.07995 * 25 20 19 27 27 H 1.09003 * 109.47001 * 304.26764 * 1 2 3 28 28 H 1.08999 * 109.46894 * 64.26084 * 1 2 3 29 29 H 1.08999 * 109.47201 * 184.26666 * 1 2 3 30 30 H 0.96995 * 120.00390 * 4.75400 * 5 3 2 31 31 H 1.08998 * 109.46861 * 295.29259 * 6 5 3 32 32 H 1.09003 * 109.47113 * 55.28662 * 6 5 3 33 33 H 0.97001 * 120.00048 * 185.02089 * 11 10 8 34 34 H 1.09007 * 117.49732 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.49813 * 145.02103 * 16 7 6 36 36 H 1.09002 * 117.49395 * 252.50979 * 17 16 7 37 37 H 1.08999 * 117.50127 * 107.48935 * 17 16 7 38 38 H 1.09006 * 109.68123 * 290.16314 * 18 2 1 39 39 H 1.08997 * 109.68098 * 50.68004 * 18 2 1 40 40 H 1.09010 * 109.25284 * 290.87279 * 19 18 2 41 41 H 1.08994 * 109.25860 * 171.44503 * 19 18 2 42 42 H 1.08001 * 119.72597 * 359.39836 * 21 20 19 43 43 H 1.08002 * 120.11474 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.11185 * 180.14830 * 23 22 21 45 45 H 1.08001 * 119.72992 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.25157 * 102.28575 * 26 25 20 47 47 H 1.09003 * 109.25065 * 221.74626 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0375 1.4190 0.0000 4 8 2.6549 1.8423 0.9541 5 7 1.8051 2.2177 -1.0605 6 6 2.3863 3.5617 -1.1066 7 6 2.0693 4.2085 -2.4564 8 6 2.9096 3.7386 -3.6156 9 1 2.4682 3.6358 -4.5959 10 6 4.2421 3.4399 -3.4249 11 7 4.8844 3.9322 -2.3882 12 14 5.1351 2.3362 -4.6389 13 1 5.7314 3.1662 -5.7163 14 1 6.2102 1.5930 -3.9340 15 1 4.1734 1.3722 -5.2315 16 6 1.6275 5.6733 -2.4515 17 6 0.6098 4.5683 -2.7418 18 6 2.0471 -0.7332 -1.2432 19 6 3.5551 -0.5117 -1.3411 20 6 4.2258 -0.8480 -0.0349 21 6 5.5977 -1.0659 -0.0493 22 6 6.2720 -1.3659 1.1159 23 6 5.5777 -1.4502 2.3087 24 6 4.2152 -1.2364 2.3247 25 6 3.5337 -0.9376 1.1517 26 6 2.0444 -0.7300 1.2391 27 1 -0.3633 0.5787 0.8493 28 1 -0.3633 0.4463 -0.9257 29 1 -0.3633 -1.0248 0.0765 30 1 1.2531 1.9027 -1.7932 31 1 1.9641 4.1678 -0.3051 32 1 3.4670 3.4947 -0.9806 33 1 5.8380 3.7825 -2.2926 34 1 1.5631 6.1763 -1.4865 35 1 1.9448 6.2974 -3.2868 36 1 0.2576 4.4656 -3.7683 37 1 -0.1244 4.3443 -1.9680 38 1 1.8378 -1.7993 -1.1542 39 1 1.5586 -0.3363 -2.1331 40 1 3.7498 0.5324 -1.5867 41 1 3.9614 -1.1471 -2.1279 42 1 6.1406 -1.0002 -0.9806 43 1 7.3388 -1.5335 1.0968 44 1 6.1006 -1.6824 3.2247 45 1 3.6736 -1.3020 3.2568 46 1 1.5504 -1.6986 1.3164 47 1 1.8154 -0.1381 2.1253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431159637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:31 Heat of formation + Delta-G solvation = -4.858355 kcal Electronic energy + Delta-G solvation = -27509.981909 eV Core-core repulsion = 24043.307567 eV Total energy + Delta-G solvation = -3466.674343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60594 -38.55218 -36.84519 -35.66436 -33.16784 -32.53756 -32.26208 -31.12705 -28.95378 -26.46955 -26.24273 -25.31286 -23.24293 -22.44643 -21.85013 -21.25343 -20.35683 -19.29032 -18.34558 -16.56070 -16.25360 -15.79023 -15.42475 -15.19888 -14.75026 -14.59367 -14.33044 -13.99889 -13.68126 -13.44393 -13.37580 -12.93964 -12.73595 -12.67458 -12.57811 -12.09062 -11.78331 -11.78076 -11.63176 -11.55991 -11.43954 -11.17393 -11.00125 -10.90820 -10.78348 -10.52024 -10.32254 -10.22790 -10.12066 -9.55693 -9.30468 -8.92273 -8.79896 -8.45246 -8.25627 -8.19906 -7.84878 -6.15223 -4.13482 1.67208 1.68074 3.19451 3.29990 3.31950 3.40167 3.98444 4.03794 4.29459 4.66498 4.80345 4.86289 4.98249 5.14594 5.21204 5.23160 5.33925 5.43730 5.50013 5.57495 5.57769 5.67533 5.74286 5.79994 5.88483 5.95136 6.00106 6.05494 6.11004 6.21023 6.23399 6.28553 6.31198 6.40143 6.52055 6.53499 6.59830 6.66341 6.75977 6.77882 6.93176 6.97497 7.05952 7.27728 7.31381 7.50564 7.58619 7.94971 8.33163 8.45707 8.80032 9.07900 9.43289 10.86734 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.005925 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.248892 B = 4724.846669 C = 5847.054830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C 0.517 3.483 4 O -0.546 6.546 5 N -0.705 5.705 6 C 0.145 3.855 7 C 0.042 3.958 8 C -0.500 4.500 9 H 0.062 0.938 10 C 0.080 3.920 11 N -0.861 5.861 12 Si 0.877 3.123 13 H -0.280 1.280 14 H -0.283 1.283 15 H -0.270 1.270 16 C -0.194 4.194 17 C -0.211 4.211 18 C -0.103 4.103 19 C -0.094 4.094 20 C -0.066 4.066 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.056 4.056 26 C -0.055 4.055 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.027 0.973 32 H 0.118 0.882 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.077 0.923 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -12.076 5.069 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C 0.302 3.698 4 O -0.424 6.424 5 N -0.353 5.353 6 C 0.023 3.977 7 C 0.041 3.959 8 C -0.537 4.537 9 H 0.080 0.920 10 C -0.125 4.125 11 N -0.496 5.496 12 Si 0.704 3.296 13 H -0.207 1.207 14 H -0.208 1.208 15 H -0.194 1.194 16 C -0.233 4.233 17 C -0.248 4.248 18 C -0.141 4.141 19 C -0.131 4.131 20 C -0.066 4.066 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.056 4.056 26 C -0.093 4.093 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.046 0.954 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.095 0.905 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.168 -11.794 5.875 13.820 hybrid contribution 0.407 -0.402 -1.047 1.193 sum -3.761 -12.196 4.828 13.645 Atomic orbital electron populations 1.21812 0.92604 1.02411 1.02714 1.20856 0.96687 0.93813 0.97249 1.20100 0.80094 0.86580 0.83024 1.90654 1.41445 1.75604 1.34738 1.45995 1.51770 1.16730 1.20813 1.21235 1.02199 0.79827 0.94433 1.19145 0.90226 0.92370 0.94131 1.20392 0.94051 1.45468 0.93755 0.92005 1.24917 0.97298 0.95111 0.95197 1.69856 1.08875 1.41532 1.29358 0.86815 0.79642 0.81741 0.81364 1.20652 1.20821 1.19439 1.22929 1.05729 0.94304 1.00304 1.22878 0.94106 1.07875 0.99984 1.21596 0.95562 1.00294 0.96649 1.20616 0.94673 1.03579 0.94220 1.19573 0.93634 0.98654 0.94723 1.21120 0.93941 1.00265 0.98367 1.20954 0.99383 1.01276 0.92891 1.20943 0.94398 1.01560 0.97657 1.21023 0.94483 1.00788 0.97367 1.19422 0.95415 0.98300 0.92498 1.20324 0.91603 0.99555 0.97774 0.92125 0.91729 0.91703 0.77348 0.95434 0.86404 0.92472 0.91665 0.90209 0.90591 0.91442 0.90982 0.90535 0.89013 0.90777 0.86593 0.86597 0.86614 0.86618 0.90496 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.45 37.16 0.31 -1.27 16 2 C -0.08 -1.20 0.64 -155.63 -0.10 -1.30 16 3 C 0.52 9.95 4.62 -10.98 -0.05 9.90 16 4 O -0.55 -12.71 15.29 5.56 0.09 -12.63 16 5 N -0.70 -13.92 5.13 -60.29 -0.31 -14.23 16 6 C 0.15 3.40 5.30 -4.04 -0.02 3.38 16 7 C 0.04 0.98 1.71 -155.66 -0.27 0.72 16 8 C -0.50 -12.70 8.98 -34.44 -0.31 -13.01 16 9 H 0.06 1.57 7.90 -52.49 -0.41 1.16 16 10 C 0.08 2.06 5.07 -17.82 -0.09 1.97 16 11 N -0.86 -23.45 11.10 55.43 0.62 -22.83 16 12 Si 0.88 19.95 29.59 -169.99 -5.03 14.92 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 C -0.19 -4.30 9.88 -26.73 -0.26 -4.56 16 17 C -0.21 -4.27 9.95 -26.73 -0.27 -4.54 16 18 C -0.10 -1.41 4.71 -26.71 -0.13 -1.54 16 19 C -0.09 -1.55 5.17 -28.05 -0.15 -1.70 16 20 C -0.07 -1.12 5.53 -104.61 -0.58 -1.70 16 21 C -0.12 -1.94 9.61 -39.44 -0.38 -2.32 16 22 C -0.13 -1.87 10.05 -39.68 -0.40 -2.27 16 23 C -0.13 -1.80 10.05 -39.68 -0.40 -2.20 16 24 C -0.12 -1.76 9.61 -39.44 -0.38 -2.14 16 25 C -0.06 -0.91 4.91 -104.62 -0.51 -1.42 16 26 C -0.06 -0.78 4.09 -28.06 -0.11 -0.90 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 29 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.39 7.03 7.78 -40.82 -0.32 6.71 16 31 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 32 H 0.12 3.21 5.46 -51.93 -0.28 2.92 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.06 1.38 8.10 -51.92 -0.42 0.96 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.08 0.99 7.75 -51.93 -0.40 0.58 16 40 H 0.09 1.86 7.11 -51.92 -0.37 1.49 16 41 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 42 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 43 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 45 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 46 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 47 H 0.08 1.24 7.72 -51.93 -0.40 0.83 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -29.52 374.04 -10.73 -40.24 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.64 Total: 13.78 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -4.09 Total: -24.89 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.31 Total: -37.07 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.52 -10.73 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431159637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.385 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds