Wall clock time and date at job start Fri Apr 10 2020 22:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.67823 * 2 1 4 4 O 1.21273 * 120.00485 * 114.69663 * 3 2 1 5 5 N 1.34777 * 119.99365 * 294.70303 * 3 2 1 6 6 C 1.46506 * 119.99802 * 184.76175 * 5 3 2 7 7 C 1.52998 * 109.47344 * 175.29133 * 6 5 3 8 8 C 1.50695 * 115.55012 * 282.51953 * 7 6 5 9 9 H 1.08001 * 120.00081 * 143.68360 * 8 7 6 10 10 C 1.37880 * 120.00197 * 323.68551 * 8 7 6 11 11 N 1.31513 * 119.99561 * 339.12360 * 10 8 7 12 12 Si 1.86800 * 120.00272 * 159.12667 * 10 8 7 13 13 H 1.48498 * 109.46891 * 89.99823 * 12 10 8 14 14 H 1.48504 * 109.47104 * 209.99901 * 12 10 8 15 15 H 1.48500 * 109.47155 * 329.99735 * 12 10 8 16 16 C 1.52995 * 117.49995 * 136.80942 * 7 6 5 17 17 C 1.53002 * 60.00260 * 252.51285 * 16 7 6 18 18 C 1.53312 * 109.70758 * 239.46777 * 2 1 3 19 19 C 1.52732 * 108.39461 * 170.44534 * 18 2 1 20 20 C 1.50635 * 110.58977 * 51.15476 * 19 18 2 21 21 C 1.38911 * 117.76141 * 162.30689 * 20 19 18 22 22 C 1.37932 * 120.54328 * 179.42556 * 21 20 19 23 23 C 1.38265 * 119.77082 * 359.97438 * 22 21 20 24 24 C 1.37935 * 119.77382 * 0.13088 * 23 22 21 25 25 C 1.37663 * 122.55389 * 341.97140 * 20 19 18 26 26 C 1.50629 * 122.55607 * 1.07995 * 25 20 19 27 27 H 1.09003 * 109.47001 * 304.26764 * 1 2 3 28 28 H 1.08999 * 109.46894 * 64.26084 * 1 2 3 29 29 H 1.08999 * 109.47201 * 184.26666 * 1 2 3 30 30 H 0.96995 * 120.00390 * 4.75400 * 5 3 2 31 31 H 1.08998 * 109.46861 * 295.29259 * 6 5 3 32 32 H 1.09003 * 109.47113 * 55.28662 * 6 5 3 33 33 H 0.97001 * 120.00048 * 185.02089 * 11 10 8 34 34 H 1.09007 * 117.49732 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.49813 * 145.02103 * 16 7 6 36 36 H 1.09002 * 117.49395 * 252.50979 * 17 16 7 37 37 H 1.08999 * 117.50127 * 107.48935 * 17 16 7 38 38 H 1.09006 * 109.68123 * 290.16314 * 18 2 1 39 39 H 1.08997 * 109.68098 * 50.68004 * 18 2 1 40 40 H 1.09010 * 109.25284 * 290.87279 * 19 18 2 41 41 H 1.08994 * 109.25860 * 171.44503 * 19 18 2 42 42 H 1.08001 * 119.72597 * 359.39836 * 21 20 19 43 43 H 1.08002 * 120.11474 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.11185 * 180.14830 * 23 22 21 45 45 H 1.08001 * 119.72992 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.25157 * 102.28575 * 26 25 20 47 47 H 1.09003 * 109.25065 * 221.74626 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0375 1.4190 0.0000 4 8 2.6549 1.8423 0.9541 5 7 1.8051 2.2177 -1.0605 6 6 2.3863 3.5617 -1.1066 7 6 2.0693 4.2085 -2.4564 8 6 2.9096 3.7386 -3.6156 9 1 2.4682 3.6358 -4.5959 10 6 4.2421 3.4399 -3.4249 11 7 4.8844 3.9322 -2.3882 12 14 5.1351 2.3362 -4.6389 13 1 5.7314 3.1662 -5.7163 14 1 6.2102 1.5930 -3.9340 15 1 4.1734 1.3722 -5.2315 16 6 1.6275 5.6733 -2.4515 17 6 0.6098 4.5683 -2.7418 18 6 2.0471 -0.7332 -1.2432 19 6 3.5551 -0.5117 -1.3411 20 6 4.2258 -0.8480 -0.0349 21 6 5.5977 -1.0659 -0.0493 22 6 6.2720 -1.3659 1.1159 23 6 5.5777 -1.4502 2.3087 24 6 4.2152 -1.2364 2.3247 25 6 3.5337 -0.9376 1.1517 26 6 2.0444 -0.7300 1.2391 27 1 -0.3633 0.5787 0.8493 28 1 -0.3633 0.4463 -0.9257 29 1 -0.3633 -1.0248 0.0765 30 1 1.2531 1.9027 -1.7932 31 1 1.9641 4.1678 -0.3051 32 1 3.4670 3.4947 -0.9806 33 1 5.8380 3.7825 -2.2926 34 1 1.5631 6.1763 -1.4865 35 1 1.9448 6.2974 -3.2868 36 1 0.2576 4.4656 -3.7683 37 1 -0.1244 4.3443 -1.9680 38 1 1.8378 -1.7993 -1.1542 39 1 1.5586 -0.3363 -2.1331 40 1 3.7498 0.5324 -1.5867 41 1 3.9614 -1.1471 -2.1279 42 1 6.1406 -1.0002 -0.9806 43 1 7.3388 -1.5335 1.0968 44 1 6.1006 -1.6824 3.2247 45 1 3.6736 -1.3020 3.2568 46 1 1.5504 -1.6986 1.3164 47 1 1.8154 -0.1381 2.1253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431159637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:31 Heat of formation + Delta-G solvation = -19.681384 kcal Electronic energy + Delta-G solvation = -27510.624684 eV Core-core repulsion = 24043.307567 eV Total energy + Delta-G solvation = -3467.317117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88952 -39.93262 -38.54070 -37.00142 -34.78509 -34.24201 -33.70753 -32.27765 -30.08468 -28.11514 -27.43638 -27.17833 -24.38538 -23.80450 -23.03391 -22.93076 -21.65507 -21.12373 -19.86177 -18.22140 -17.44191 -17.20471 -16.87184 -16.72921 -16.43410 -16.02776 -15.64024 -15.49489 -15.21824 -14.71741 -14.67119 -14.32263 -14.21771 -13.83127 -13.70028 -13.63707 -13.36373 -13.07268 -12.92300 -12.83680 -12.76473 -12.72901 -12.61535 -12.33055 -12.30038 -12.07664 -12.03773 -11.38235 -11.34987 -11.21982 -11.19464 -10.63028 -10.52288 -10.04329 -9.66424 -9.62972 -9.37236 -8.13671 -6.16235 0.48614 0.51821 1.35398 1.41611 1.49424 1.90766 2.38113 2.49941 2.86347 2.98716 3.54629 3.62611 3.70138 3.77302 4.00008 4.08248 4.13489 4.20655 4.24506 4.32257 4.44267 4.49808 4.53949 4.64436 4.67206 4.72047 4.78757 4.81054 4.89442 4.90313 4.94472 4.94958 5.03343 5.09785 5.11646 5.17499 5.23655 5.28351 5.29635 5.39422 5.54193 5.58747 5.61358 5.62195 5.79263 5.82755 5.97519 6.17623 6.37955 6.78395 6.93922 7.42869 7.55668 8.86925 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.005925 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.248892 B = 4724.846669 C = 5847.054830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C 0.514 3.486 4 O -0.594 6.594 5 N -0.699 5.699 6 C 0.160 3.840 7 C 0.015 3.985 8 C -0.505 4.505 9 H 0.061 0.939 10 C 0.039 3.961 11 N -0.892 5.892 12 Si 0.929 3.071 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.254 1.254 16 C -0.203 4.203 17 C -0.175 4.175 18 C -0.098 4.098 19 C -0.094 4.094 20 C -0.091 4.091 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.072 4.072 26 C -0.055 4.055 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.404 0.596 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.115 0.885 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 -14.359 4.976 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.078 4.078 3 C 0.301 3.699 4 O -0.475 6.475 5 N -0.348 5.348 6 C 0.036 3.964 7 C 0.014 3.986 8 C -0.542 4.542 9 H 0.079 0.921 10 C -0.162 4.162 11 N -0.529 5.529 12 Si 0.755 3.245 13 H -0.206 1.206 14 H -0.217 1.217 15 H -0.178 1.178 16 C -0.242 4.242 17 C -0.212 4.212 18 C -0.136 4.136 19 C -0.131 4.131 20 C -0.092 4.092 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.072 4.072 26 C -0.092 4.092 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.239 0.761 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.155 0.845 44 H 0.163 0.837 45 H 0.155 0.845 46 H 0.133 0.867 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.262 -14.092 5.746 16.457 hybrid contribution 1.097 0.366 -0.967 1.507 sum -5.165 -13.726 4.779 15.425 Atomic orbital electron populations 1.21845 0.89617 1.04728 1.02956 1.20879 0.98856 0.89966 0.98068 1.21060 0.78798 0.88302 0.81716 1.90622 1.43455 1.76947 1.36462 1.45854 1.51731 1.15645 1.21534 1.20752 0.99856 0.81625 0.94201 1.19154 0.92655 0.93289 0.93529 1.20623 0.94246 1.45040 0.94250 0.92062 1.25514 0.98165 0.96017 0.96547 1.70007 1.08587 1.43107 1.31217 0.85989 0.78675 0.80394 0.79423 1.20581 1.21705 1.17814 1.22930 1.06951 0.93945 1.00370 1.22874 0.92553 1.04472 1.01288 1.21653 0.93221 1.02202 0.96492 1.20574 0.97154 1.00749 0.94583 1.19766 0.94109 0.99884 0.95391 1.21338 0.94327 1.01374 0.99125 1.21275 1.00594 1.00785 0.92672 1.21343 0.94463 1.00377 0.98518 1.21401 0.95126 1.00377 0.97937 1.19769 0.96758 0.98128 0.92533 1.20416 0.90695 1.01096 0.96943 0.92577 0.91026 0.88213 0.76117 0.96732 0.90476 0.93190 0.91285 0.90928 0.89372 0.89312 0.87664 0.89644 0.93674 0.89884 0.86939 0.84494 0.83694 0.84464 0.86711 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.45 71.98 0.61 -1.98 16 2 C -0.07 -2.01 0.64 -52.91 -0.03 -2.05 16 3 C 0.51 19.87 4.62 87.66 0.40 20.27 16 4 O -0.59 -28.56 15.29 -3.01 -0.05 -28.61 16 5 N -0.70 -27.77 5.13 -463.05 -2.38 -30.15 16 6 C 0.16 7.70 5.30 86.38 0.46 8.16 16 7 C 0.01 0.68 1.71 -52.93 -0.09 0.59 16 8 C -0.50 -25.79 8.98 25.60 0.23 -25.56 16 9 H 0.06 3.08 7.90 -2.91 -0.02 3.05 16 10 C 0.04 2.08 5.07 84.66 0.43 2.51 16 11 N -0.89 -50.81 11.10 21.45 0.24 -50.57 16 12 Si 0.93 41.74 29.59 68.60 2.03 43.77 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 16 C -0.20 -8.95 9.88 30.59 0.30 -8.65 16 17 C -0.17 -6.74 9.95 30.60 0.30 -6.43 16 18 C -0.10 -2.46 4.71 30.61 0.14 -2.31 16 19 C -0.09 -3.09 5.17 29.74 0.15 -2.94 16 20 C -0.09 -3.12 5.53 -19.86 -0.11 -3.23 16 21 C -0.14 -4.80 9.61 22.36 0.21 -4.58 16 22 C -0.14 -3.93 10.05 22.20 0.22 -3.70 16 23 C -0.13 -3.47 10.05 22.20 0.22 -3.25 16 24 C -0.13 -3.70 9.61 22.36 0.21 -3.49 16 25 C -0.07 -2.25 4.91 -19.86 -0.10 -2.34 16 26 C -0.05 -1.42 4.09 29.74 0.12 -1.30 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.29 7.92 -2.39 -0.02 1.27 16 29 H 0.10 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.40 14.07 7.78 -92.71 -0.72 13.35 16 31 H 0.01 0.72 7.98 -2.39 -0.02 0.70 16 32 H 0.08 4.44 5.46 -2.39 -0.01 4.43 16 33 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 34 H 0.07 2.94 8.10 -2.38 -0.02 2.92 16 35 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.10 1.99 8.10 -2.38 -0.02 1.97 16 39 H 0.08 1.97 7.75 -2.39 -0.02 1.96 16 40 H 0.04 1.91 7.11 -2.38 -0.02 1.89 16 41 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 42 H 0.11 3.65 8.05 -2.91 -0.02 3.62 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.14 3.17 8.05 -2.91 -0.02 3.15 16 46 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 47 H 0.07 2.04 7.72 -2.39 -0.02 2.02 16 Total: -1.00 -67.46 374.04 3.78 -63.69 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: 0.23 Total: 42.17 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.70 Total: -40.29 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.14 Total: -80.72 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.05 Total: -28.61 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -67.46 3.78 -63.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431159637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds