Wall clock time and date at job start Fri Apr 10 2020 22:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38273 * 119.72824 * 2 1 4 4 C 1.37914 * 120.10475 * 179.74057 * 3 2 1 5 5 C 1.39564 * 119.75477 * 0.47738 * 4 3 2 6 6 C 1.47724 * 120.04489 * 179.78522 * 5 4 3 7 7 O 1.21588 * 120.00037 * 92.13471 * 6 5 4 8 8 N 1.34780 * 119.99964 * 272.13034 * 6 5 4 9 9 C 1.36878 * 119.99918 * 241.13411 * 8 6 5 10 10 H 1.07993 * 120.00109 * 325.77162 * 9 8 6 11 11 C 1.39050 * 119.99923 * 145.77213 * 9 8 6 12 12 N 1.31370 * 119.99877 * 347.08380 * 11 9 8 13 13 Si 1.86795 * 120.00025 * 167.07975 * 11 9 8 14 14 H 1.48498 * 109.46960 * 60.00361 * 13 11 9 15 15 H 1.48505 * 109.46829 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47528 * 300.00203 * 13 11 9 17 17 C 1.46500 * 120.00018 * 61.13666 * 8 6 5 18 18 C 1.55238 * 110.58278 * 61.18426 * 17 8 6 19 19 C 1.54892 * 102.58834 * 203.34217 * 18 17 8 20 20 C 1.54265 * 104.31208 * 37.92776 * 19 18 17 21 21 C 1.53871 * 106.59968 * 336.32764 * 20 19 18 22 22 C 1.39844 * 119.90693 * 359.51045 * 5 4 3 23 23 C 1.37953 * 119.75478 * 0.25233 * 22 5 4 24 24 C 1.51400 * 109.76360 * 179.97438 * 23 22 5 25 25 C 1.54353 * 105.16717 * 342.82260 * 24 23 22 26 26 C 1.51350 * 130.40913 * 180.20493 * 22 5 4 27 27 H 1.08998 * 109.47380 * 270.02620 * 1 2 3 28 28 H 1.09001 * 109.46654 * 30.02810 * 1 2 3 29 29 H 1.09007 * 109.46706 * 150.02403 * 1 2 3 30 30 H 1.07997 * 119.94644 * 0.02562 * 3 2 1 31 31 H 1.07990 * 120.12062 * 180.24667 * 4 3 2 32 32 H 0.97000 * 119.99960 * 179.97438 * 12 11 9 33 33 H 1.09001 * 110.43608 * 183.77126 * 17 8 6 34 34 H 1.08998 * 110.89788 * 85.04256 * 18 17 8 35 35 H 1.09006 * 110.76334 * 321.56947 * 18 17 8 36 36 H 1.08998 * 110.48254 * 279.18253 * 19 18 17 37 37 H 1.08999 * 110.48670 * 156.67753 * 19 18 17 38 38 H 1.08997 * 110.02894 * 95.61574 * 20 19 18 39 39 H 1.09000 * 110.03315 * 216.98995 * 20 19 18 40 40 H 1.08997 * 110.03523 * 119.28855 * 21 20 19 41 41 H 1.09005 * 110.02929 * 240.66253 * 21 20 19 42 42 H 1.09000 * 110.30882 * 223.89531 * 24 23 22 43 43 H 1.09002 * 110.30319 * 101.73669 * 24 23 22 44 44 H 1.09001 * 110.82539 * 268.08785 * 25 24 23 45 45 H 1.08999 * 111.00207 * 144.60399 * 25 24 23 46 46 H 1.08992 * 110.31173 * 316.12813 * 26 22 5 47 47 H 1.09001 * 110.30169 * 78.28880 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1927 1.2007 0.0000 4 6 3.5718 1.2098 0.0054 5 6 4.2725 0.0028 0.0008 6 6 5.7497 0.0050 0.0017 7 8 6.3570 -0.0377 1.0542 8 7 6.4243 0.0544 -1.1641 9 6 7.2638 -0.9689 -1.5128 10 1 7.8204 -1.4942 -0.7509 11 6 7.4000 -1.3321 -2.8481 12 7 6.5504 -0.8792 -3.7419 13 14 8.7911 -2.4637 -3.3710 14 1 8.6693 -3.7603 -2.6572 15 1 8.7165 -2.6956 -4.8359 16 1 10.0938 -1.8346 -3.0357 17 6 6.2589 1.2032 -2.0580 18 6 6.7114 2.5112 -1.3550 19 6 5.9344 3.6002 -2.1358 20 6 4.5593 2.9599 -2.4170 21 6 4.7657 1.4359 -2.3675 22 6 3.5741 -1.2088 0.0010 23 6 2.1946 -1.2039 0.0006 24 6 1.6775 -2.6268 0.0004 25 6 2.8775 -3.4924 -0.4392 26 6 4.0825 -2.6343 0.0008 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6474 2.1330 0.0004 31 1 4.1076 2.1474 0.0094 32 1 6.6457 -1.1323 -4.6735 33 1 6.8205 1.0520 -2.9799 34 1 7.7869 2.6557 -1.4573 35 1 6.4194 2.5064 -0.3048 36 1 6.4436 3.8362 -3.0701 37 1 5.8202 4.4975 -1.5275 38 1 3.8427 3.2647 -1.6544 39 1 4.2036 3.2575 -3.4034 40 1 4.1491 1.0009 -1.5809 41 1 4.5096 0.9930 -3.3300 42 1 0.8562 -2.7308 -0.7086 43 1 1.3526 -2.9113 1.0012 44 1 2.8772 -3.6350 -1.5199 45 1 2.8763 -4.4527 0.0766 46 1 4.9034 -2.7431 -0.7079 47 1 4.4055 -2.9208 1.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449951118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:43 Heat of formation + Delta-G solvation = 8.208012 kcal Electronic energy + Delta-G solvation = -27988.322506 eV Core-core repulsion = 24522.214764 eV Total energy + Delta-G solvation = -3466.107742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42653 -38.57622 -36.72615 -35.45236 -34.02438 -32.78552 -31.20897 -28.81679 -27.86480 -27.67391 -27.01859 -26.54421 -24.40910 -22.03931 -21.00329 -20.80198 -19.93650 -19.46248 -18.47594 -17.12017 -16.23386 -15.62659 -15.31882 -14.98865 -14.62821 -14.47941 -14.37467 -13.83283 -13.50768 -13.37519 -13.18088 -12.91870 -12.73839 -12.43945 -12.23028 -11.92966 -11.76837 -11.55162 -11.46571 -11.32010 -11.07621 -10.90169 -10.81797 -10.73177 -10.63445 -10.54615 -10.52122 -10.32117 -10.23142 -10.05183 -9.89308 -9.54529 -8.85805 -8.76842 -8.07037 -7.67881 -7.21937 -6.15114 -3.74230 1.65585 1.80186 3.15726 3.29380 3.30024 3.35729 4.01315 4.25791 4.73406 4.82221 4.94845 5.06822 5.17902 5.28797 5.35867 5.39654 5.43747 5.44934 5.49667 5.56753 5.69306 5.74441 5.88639 5.95313 5.99735 6.02029 6.11581 6.14868 6.17170 6.23582 6.33577 6.35794 6.43452 6.49574 6.51911 6.54813 6.59643 6.66357 6.67285 6.80752 6.86788 6.87772 7.00747 7.07714 7.37212 7.39180 7.54164 7.61833 8.26048 8.70724 8.98171 9.51854 9.92327 10.90111 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.006895 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.926564 B = 4059.998186 C = 5436.116528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.078 4.078 5 C -0.102 4.102 6 C 0.585 3.415 7 O -0.529 6.529 8 N -0.515 5.515 9 C -0.296 4.296 10 H 0.079 0.921 11 C 0.031 3.969 12 N -0.876 5.876 13 Si 0.913 3.087 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.179 3.821 18 C -0.147 4.147 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.172 4.172 22 C -0.049 4.049 23 C -0.107 4.107 24 C -0.074 4.074 25 C -0.118 4.118 26 C -0.088 4.088 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.263 0.737 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 2.199 2.485 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.097 4.097 5 C -0.106 4.106 6 C 0.373 3.627 7 O -0.405 6.405 8 N -0.239 5.239 9 C -0.423 4.423 10 H 0.096 0.904 11 C -0.172 4.172 12 N -0.515 5.515 13 Si 0.741 3.259 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.203 1.203 17 C 0.074 3.926 18 C -0.186 4.186 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.210 4.210 22 C -0.050 4.050 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.155 4.155 26 C -0.125 4.125 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.314 2.118 2.840 10.906 hybrid contribution 0.687 -0.323 -0.639 0.992 sum -9.627 1.795 2.201 10.038 Atomic orbital electron populations 1.20728 0.91820 1.02311 1.01724 1.19358 0.95385 0.91852 1.00936 1.20671 0.93708 0.97009 1.04108 1.20890 0.94097 0.96983 0.97740 1.20374 0.96456 0.92762 1.01033 1.18508 0.85720 0.73444 0.85025 1.90602 1.71172 1.44922 1.33825 1.42504 1.43733 1.19267 1.18416 1.19173 1.20356 1.10165 0.92647 0.90364 1.25214 0.97673 0.97872 0.96405 1.69877 1.34099 1.45110 1.02388 0.86218 0.81804 0.80564 0.77357 1.20152 1.21148 1.20252 1.21627 0.94900 0.81942 0.94104 1.23182 0.99605 0.96904 0.98924 1.22257 0.96449 0.97367 0.99728 1.22119 0.96522 0.97191 1.00206 1.23415 0.99333 0.93810 1.04421 1.20289 0.93323 0.93975 0.97427 1.20266 0.93750 0.94334 1.02371 1.20967 0.98185 0.90716 1.01232 1.22268 0.93987 0.97716 1.01551 1.21095 0.98987 0.90019 1.02405 0.91664 0.91920 0.91858 0.86134 0.85716 0.92637 0.86745 0.92061 0.92736 0.92028 0.92765 0.92928 0.92816 0.88377 0.91369 0.91187 0.90786 0.90910 0.90978 0.88987 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.86 36.01 0.35 -0.88 16 2 C -0.08 -1.14 5.89 -104.46 -0.62 -1.76 16 3 C -0.14 -2.14 9.67 -39.69 -0.38 -2.52 16 4 C -0.08 -1.44 6.14 -39.21 -0.24 -1.68 16 5 C -0.10 -2.17 4.17 -104.93 -0.44 -2.60 16 6 C 0.58 14.41 4.67 -12.38 -0.06 14.35 16 7 O -0.53 -14.37 17.87 5.29 0.09 -14.28 16 8 N -0.51 -13.02 2.57 -106.88 -0.28 -13.29 16 9 C -0.30 -7.99 9.43 -15.00 -0.14 -8.13 16 10 H 0.08 2.19 7.86 -52.49 -0.41 1.77 16 11 C 0.03 0.80 5.00 -17.45 -0.09 0.71 16 12 N -0.88 -22.88 11.15 55.50 0.62 -22.26 16 13 Si 0.91 20.50 29.57 -169.99 -5.03 15.47 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.18 4.09 2.36 -66.08 -0.16 3.93 16 18 C -0.15 -2.93 6.48 -24.55 -0.16 -3.09 16 19 C -0.12 -1.96 6.82 -25.07 -0.17 -2.13 16 20 C -0.12 -2.04 6.29 -25.62 -0.16 -2.20 16 21 C -0.17 -3.54 5.73 -25.62 -0.15 -3.68 16 22 C -0.05 -0.98 6.05 -103.81 -0.63 -1.61 16 23 C -0.11 -1.79 6.00 -104.24 -0.63 -2.41 16 24 C -0.07 -1.00 6.26 -26.83 -0.17 -1.17 16 25 C -0.12 -1.70 7.08 -25.32 -0.18 -1.88 16 26 C -0.09 -1.63 6.45 -26.86 -0.17 -1.80 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.06 0.66 7.26 -51.93 -0.38 0.29 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.13 2.21 6.25 -52.49 -0.33 1.88 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.11 2.90 5.84 -51.93 -0.30 2.59 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.13 7.21 -51.93 -0.37 0.75 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.79 6.82 -51.93 -0.35 0.44 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 2.03 1.84 -73.42 -0.13 1.90 16 41 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.07 0.83 7.60 -51.93 -0.39 0.44 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 47 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -29.26 361.54 -10.62 -39.88 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.31 Total: 7.58 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -4.18 Total: -18.54 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.34 Total: -35.55 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.26 -10.62 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449951118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.089 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds