Wall clock time and date at job start Fri Apr 10 2020 22:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38273 * 119.72824 * 2 1 4 4 C 1.37914 * 120.10475 * 179.74057 * 3 2 1 5 5 C 1.39564 * 119.75477 * 0.47738 * 4 3 2 6 6 C 1.47724 * 120.04489 * 179.78522 * 5 4 3 7 7 O 1.21588 * 120.00037 * 92.13471 * 6 5 4 8 8 N 1.34780 * 119.99964 * 272.13034 * 6 5 4 9 9 C 1.36878 * 119.99918 * 241.13411 * 8 6 5 10 10 H 1.07993 * 120.00109 * 325.77162 * 9 8 6 11 11 C 1.39050 * 119.99923 * 145.77213 * 9 8 6 12 12 N 1.31370 * 119.99877 * 347.08380 * 11 9 8 13 13 Si 1.86795 * 120.00025 * 167.07975 * 11 9 8 14 14 H 1.48498 * 109.46960 * 60.00361 * 13 11 9 15 15 H 1.48505 * 109.46829 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47528 * 300.00203 * 13 11 9 17 17 C 1.46500 * 120.00018 * 61.13666 * 8 6 5 18 18 C 1.55238 * 110.58278 * 61.18426 * 17 8 6 19 19 C 1.54892 * 102.58834 * 203.34217 * 18 17 8 20 20 C 1.54265 * 104.31208 * 37.92776 * 19 18 17 21 21 C 1.53871 * 106.59968 * 336.32764 * 20 19 18 22 22 C 1.39844 * 119.90693 * 359.51045 * 5 4 3 23 23 C 1.37953 * 119.75478 * 0.25233 * 22 5 4 24 24 C 1.51400 * 109.76360 * 179.97438 * 23 22 5 25 25 C 1.54353 * 105.16717 * 342.82260 * 24 23 22 26 26 C 1.51350 * 130.40913 * 180.20493 * 22 5 4 27 27 H 1.08998 * 109.47380 * 270.02620 * 1 2 3 28 28 H 1.09001 * 109.46654 * 30.02810 * 1 2 3 29 29 H 1.09007 * 109.46706 * 150.02403 * 1 2 3 30 30 H 1.07997 * 119.94644 * 0.02562 * 3 2 1 31 31 H 1.07990 * 120.12062 * 180.24667 * 4 3 2 32 32 H 0.97000 * 119.99960 * 179.97438 * 12 11 9 33 33 H 1.09001 * 110.43608 * 183.77126 * 17 8 6 34 34 H 1.08998 * 110.89788 * 85.04256 * 18 17 8 35 35 H 1.09006 * 110.76334 * 321.56947 * 18 17 8 36 36 H 1.08998 * 110.48254 * 279.18253 * 19 18 17 37 37 H 1.08999 * 110.48670 * 156.67753 * 19 18 17 38 38 H 1.08997 * 110.02894 * 95.61574 * 20 19 18 39 39 H 1.09000 * 110.03315 * 216.98995 * 20 19 18 40 40 H 1.08997 * 110.03523 * 119.28855 * 21 20 19 41 41 H 1.09005 * 110.02929 * 240.66253 * 21 20 19 42 42 H 1.09000 * 110.30882 * 223.89531 * 24 23 22 43 43 H 1.09002 * 110.30319 * 101.73669 * 24 23 22 44 44 H 1.09001 * 110.82539 * 268.08785 * 25 24 23 45 45 H 1.08999 * 111.00207 * 144.60399 * 25 24 23 46 46 H 1.08992 * 110.31173 * 316.12813 * 26 22 5 47 47 H 1.09001 * 110.30169 * 78.28880 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1927 1.2007 0.0000 4 6 3.5718 1.2098 0.0054 5 6 4.2725 0.0028 0.0008 6 6 5.7497 0.0050 0.0017 7 8 6.3570 -0.0377 1.0542 8 7 6.4243 0.0544 -1.1641 9 6 7.2638 -0.9689 -1.5128 10 1 7.8204 -1.4942 -0.7509 11 6 7.4000 -1.3321 -2.8481 12 7 6.5504 -0.8792 -3.7419 13 14 8.7911 -2.4637 -3.3710 14 1 8.6693 -3.7603 -2.6572 15 1 8.7165 -2.6956 -4.8359 16 1 10.0938 -1.8346 -3.0357 17 6 6.2589 1.2032 -2.0580 18 6 6.7114 2.5112 -1.3550 19 6 5.9344 3.6002 -2.1358 20 6 4.5593 2.9599 -2.4170 21 6 4.7657 1.4359 -2.3675 22 6 3.5741 -1.2088 0.0010 23 6 2.1946 -1.2039 0.0006 24 6 1.6775 -2.6268 0.0004 25 6 2.8775 -3.4924 -0.4392 26 6 4.0825 -2.6343 0.0008 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6474 2.1330 0.0004 31 1 4.1076 2.1474 0.0094 32 1 6.6457 -1.1323 -4.6735 33 1 6.8205 1.0520 -2.9799 34 1 7.7869 2.6557 -1.4573 35 1 6.4194 2.5064 -0.3048 36 1 6.4436 3.8362 -3.0701 37 1 5.8202 4.4975 -1.5275 38 1 3.8427 3.2647 -1.6544 39 1 4.2036 3.2575 -3.4034 40 1 4.1491 1.0009 -1.5809 41 1 4.5096 0.9930 -3.3300 42 1 0.8562 -2.7308 -0.7086 43 1 1.3526 -2.9113 1.0012 44 1 2.8772 -3.6350 -1.5199 45 1 2.8763 -4.4527 0.0766 46 1 4.9034 -2.7431 -0.7079 47 1 4.4055 -2.9208 1.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449951118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:42 Heat of formation + Delta-G solvation = -5.728191 kcal Electronic energy + Delta-G solvation = -27988.926825 eV Core-core repulsion = 24522.214764 eV Total energy + Delta-G solvation = -3466.712062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94548 -40.16727 -38.47570 -36.77176 -35.86101 -34.11662 -33.15358 -30.13553 -29.35500 -28.88823 -28.66065 -27.97556 -26.24598 -23.41059 -22.55816 -22.11889 -21.42324 -20.97347 -20.16811 -18.96949 -17.84923 -17.15317 -16.95219 -16.34731 -16.28097 -16.24344 -15.83407 -15.52910 -14.88526 -14.75191 -14.52081 -14.17383 -14.14261 -13.85467 -13.70677 -13.47407 -13.32623 -13.00694 -12.97164 -12.82097 -12.66801 -12.39771 -12.36152 -12.11938 -12.08866 -11.96028 -11.95433 -11.93281 -11.85985 -11.65164 -11.41193 -11.03198 -10.74201 -10.68134 -9.44557 -9.17507 -9.05945 -8.17842 -5.82891 0.28916 0.45680 1.26726 1.40517 1.44862 1.50471 2.32658 2.68979 3.02811 3.07291 3.51588 3.67395 3.88131 3.91433 3.98853 4.03004 4.13385 4.18362 4.23388 4.32066 4.44406 4.60761 4.64521 4.74677 4.76119 4.79065 4.83966 4.86339 4.90129 4.92364 4.95327 4.99720 5.03340 5.08400 5.11254 5.18681 5.25195 5.30086 5.31134 5.35038 5.42599 5.46887 5.47992 5.58067 5.73189 5.75049 5.76796 6.10414 6.21739 6.75512 7.00108 7.54822 7.91889 8.85405 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.006895 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.926564 B = 4059.998186 C = 5436.116528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.086 4.086 5 C -0.137 4.137 6 C 0.584 3.416 7 O -0.577 6.577 8 N -0.528 5.528 9 C -0.327 4.327 10 H 0.051 0.949 11 C 0.001 3.999 12 N -0.886 5.886 13 Si 0.972 3.028 14 H -0.275 1.275 15 H -0.273 1.273 16 H -0.276 1.276 17 C 0.171 3.829 18 C -0.144 4.144 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.168 4.168 22 C -0.084 4.084 23 C -0.109 4.109 24 C -0.066 4.066 25 C -0.109 4.109 26 C -0.092 4.092 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.126 0.874 32 H 0.266 0.734 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.045 0.955 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 3.156 2.065 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.141 4.141 6 C 0.375 3.625 7 O -0.456 6.456 8 N -0.253 5.253 9 C -0.455 4.455 10 H 0.069 0.931 11 C -0.200 4.200 12 N -0.525 5.525 13 Si 0.797 3.203 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.202 1.202 17 C 0.067 3.933 18 C -0.183 4.183 19 C -0.146 4.146 20 C -0.152 4.152 21 C -0.205 4.205 22 C -0.085 4.085 23 C -0.110 4.110 24 C -0.103 4.103 25 C -0.146 4.146 26 C -0.129 4.129 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.144 0.856 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.077 3.093 2.399 14.611 hybrid contribution 1.855 -0.648 -0.474 2.021 sum -12.222 2.445 1.925 12.612 Atomic orbital electron populations 1.20828 0.88144 1.03952 1.03400 1.19928 0.97944 0.90903 0.98042 1.21126 0.92412 0.99066 1.02010 1.20958 0.95541 0.95699 0.98307 1.20159 0.93950 0.95002 1.05021 1.19012 0.87629 0.71815 0.84038 1.90540 1.72656 1.47339 1.35077 1.42648 1.44189 1.19626 1.18812 1.19129 1.21907 1.11529 0.92898 0.93076 1.25836 0.99462 0.98934 0.95781 1.69985 1.34724 1.45362 1.02430 0.85323 0.78911 0.78694 0.77362 1.20015 1.19807 1.20205 1.21677 0.96489 0.82246 0.92854 1.23113 0.99705 0.97021 0.98508 1.22235 0.95518 0.96948 0.99935 1.22087 0.97217 0.93828 1.02076 1.23335 0.97496 0.96911 1.02790 1.20593 0.95326 0.93622 0.98966 1.20721 0.92232 0.96739 1.01260 1.21033 0.97921 0.88076 1.03273 1.22271 0.92462 0.98501 1.01411 1.21105 0.99499 0.91363 1.00943 0.89735 0.90023 0.90613 0.82160 0.85599 0.92465 0.89848 0.92915 0.93923 0.91209 0.89638 0.90585 0.91065 0.88055 0.94218 0.88499 0.88391 0.91601 0.88220 0.93670 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.86 71.24 0.70 -1.10 16 2 C -0.07 -1.82 5.89 -19.76 -0.12 -1.93 16 3 C -0.13 -3.59 9.67 22.20 0.21 -3.38 16 4 C -0.09 -3.12 6.14 22.51 0.14 -2.98 16 5 C -0.14 -6.09 4.17 -20.06 -0.08 -6.18 16 6 C 0.58 31.01 4.67 86.75 0.41 31.42 16 7 O -0.58 -34.07 17.87 -3.99 -0.07 -34.14 16 8 N -0.53 -28.76 2.57 -610.31 -1.57 -30.33 16 9 C -0.33 -19.12 9.43 84.10 0.79 -18.33 16 10 H 0.05 3.16 7.86 -2.91 -0.02 3.14 16 11 C 0.00 0.08 5.00 84.96 0.42 0.50 16 12 N -0.89 -48.45 11.15 21.68 0.24 -48.21 16 13 Si 0.97 43.87 29.57 68.60 2.03 45.89 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 C 0.17 8.24 2.36 46.19 0.11 8.35 16 18 C -0.14 -5.93 6.48 32.01 0.21 -5.72 16 19 C -0.11 -3.37 6.82 31.67 0.22 -3.15 16 20 C -0.11 -3.57 6.29 31.32 0.20 -3.38 16 21 C -0.17 -7.02 5.73 31.32 0.18 -6.84 16 22 C -0.08 -3.44 6.05 -19.34 -0.12 -3.55 16 23 C -0.11 -3.44 6.00 -19.61 -0.12 -3.56 16 24 C -0.07 -1.59 6.26 30.53 0.19 -1.40 16 25 C -0.11 -3.07 7.08 31.51 0.22 -2.84 16 26 C -0.09 -3.61 6.45 30.51 0.20 -3.41 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.07 1.14 7.26 -2.38 -0.02 1.12 16 30 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.13 4.38 6.25 -2.92 -0.02 4.37 16 32 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 33 H 0.08 4.49 5.84 -2.39 -0.01 4.47 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 1.83 7.21 -2.38 -0.02 1.81 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 2.04 6.82 -2.39 -0.02 2.02 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.10 4.26 1.84 -22.58 -0.04 4.22 16 41 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.10 1.85 7.60 -2.39 -0.02 1.83 16 43 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -71.40 361.54 5.32 -66.08 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.93 Total: 28.17 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.76 Total: -27.48 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.33 Total: -78.53 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.07 Total: -34.14 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -71.40 5.32 -66.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449951118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.355 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds