Wall clock time and date at job start Fri Apr 10 2020 22:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 120.00223 * 2 1 4 4 H 1.48498 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46919 * 299.99863 * 3 2 1 6 6 H 1.48503 * 109.46909 * 59.99860 * 3 2 1 7 7 C 1.39943 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99877 * 192.39561 * 7 2 1 9 9 C 1.41396 * 120.00394 * 12.39163 * 7 2 1 10 10 C 1.40718 * 120.24509 * 208.36571 * 9 7 2 11 11 C 1.37620 * 119.74116 * 179.97438 * 10 9 7 12 12 C 1.38626 * 120.25193 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75423 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47243 * 89.99316 * 13 12 11 15 15 C 1.46902 * 111.00316 * 180.02562 * 14 13 12 16 16 H 1.08995 * 113.50936 * 314.52745 * 15 14 13 17 17 C 1.50995 * 114.56881 * 180.36399 * 15 14 13 18 18 H 1.08996 * 115.08140 * 171.95198 * 17 15 14 19 19 C 1.52808 * 125.68913 * 17.33219 * 17 15 14 20 20 C 1.56109 * 100.08189 * 233.24074 * 19 17 15 21 21 O 1.45483 * 105.74333 * 23.23441 * 20 19 17 22 22 C 1.38628 * 107.03703 * 12.01656 * 21 20 19 23 23 H 1.09001 * 108.90853 * 72.77362 * 22 21 20 24 24 C 1.47447 * 138.30639 * 228.67279 * 22 21 20 25 25 C 1.52719 * 125.48297 * 259.85451 * 24 22 21 26 26 C 1.53991 * 86.70795 * 108.91941 * 25 24 22 27 27 C 1.52732 * 125.44604 * 17.35122 * 24 22 21 28 28 C 1.38634 * 120.50359 * 0.26907 * 12 11 10 29 29 C 1.37621 * 120.24435 * 359.45131 * 28 12 11 30 30 H 0.97008 * 119.99791 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.12898 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.87175 * 180.02562 * 11 10 9 33 33 H 1.09008 * 109.46568 * 329.99713 * 13 12 11 34 34 H 1.08989 * 109.47615 * 210.00055 * 13 12 11 35 35 H 1.00898 * 110.99729 * 56.05128 * 14 13 12 36 36 H 1.08997 * 111.29044 * 115.52944 * 19 17 15 37 37 H 1.09005 * 111.32804 * 350.96351 * 19 17 15 38 38 H 1.09000 * 110.19298 * 264.16798 * 20 19 17 39 39 H 1.09000 * 110.19296 * 142.30071 * 20 19 17 40 40 H 1.09000 * 113.67448 * 223.37613 * 25 24 22 41 41 H 1.09004 * 113.66890 * 354.46608 * 25 24 22 42 42 H 1.09003 * 113.57271 * 269.95941 * 26 25 24 43 43 H 1.09007 * 113.56612 * 139.20431 * 26 25 24 44 44 H 1.08999 * 113.67450 * 5.51232 * 27 24 22 45 45 H 1.09009 * 113.67445 * 136.51013 * 27 24 22 46 46 H 1.08001 * 119.88199 * 179.70897 * 28 12 11 47 47 H 1.08001 * 120.12606 * 180.27329 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0690 -1.2231 0.2002 9 6 1.3256 -2.4221 -0.2638 10 6 1.7918 -3.6321 0.2828 11 6 1.1194 -4.8038 0.0202 12 6 -0.0127 -4.7951 -0.7798 13 6 -0.7401 -6.0848 -1.0605 14 7 -1.7659 -6.3024 -0.0319 15 6 -2.4966 -7.5537 -0.2734 16 1 -2.7962 -7.6886 -1.3126 17 6 -3.5797 -7.8529 0.7352 18 1 -4.2166 -8.7030 0.4908 19 6 -4.2043 -6.8442 1.6983 20 6 -4.0005 -7.5958 3.0513 21 8 -2.8937 -8.5138 2.8301 22 6 -2.3048 -8.1574 1.6268 23 1 -1.7535 -7.2273 1.7651 24 6 -1.8580 -8.8117 0.3833 25 6 -0.4161 -9.1866 0.0475 26 6 -0.8451 -10.6524 0.2442 27 6 -2.2799 -10.2022 -0.0870 28 6 -0.4776 -3.6099 -1.3286 29 6 0.1756 -2.4254 -1.0748 30 1 -0.4850 0.8401 -0.0004 31 1 2.6733 -3.6411 0.9066 32 1 1.4751 -5.7336 0.4390 33 1 -0.0306 -6.9123 -1.0469 34 1 -1.2141 -6.0288 -2.0403 35 1 -2.3986 -5.5180 0.0193 36 1 -5.2626 -6.6953 1.4839 37 1 -3.6640 -5.8976 1.6863 38 1 -4.9020 -8.1496 3.3136 39 1 -3.7499 -6.8877 3.8411 40 1 -0.1290 -8.9481 -0.9766 41 1 0.3090 -8.8402 0.7840 42 1 -0.7251 -11.0082 1.2675 43 1 -0.4207 -11.3335 -0.4936 44 1 -3.0402 -10.6650 0.5422 45 1 -2.5213 -10.2506 -1.1489 46 1 -1.3579 -3.6154 -1.9542 47 1 -0.1908 -1.5026 -1.4997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451490293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:49 Heat of formation + Delta-G solvation = 82.956700 kcal Electronic energy + Delta-G solvation = -26182.826782 eV Core-core repulsion = 22719.960386 eV Total energy + Delta-G solvation = -3462.866396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22266 -38.02839 -37.68592 -35.59021 -33.92202 -32.53914 -30.64064 -29.61912 -29.22780 -26.24835 -25.92918 -24.80410 -23.61549 -22.93158 -21.86080 -20.99784 -19.86317 -19.74506 -18.31517 -17.28544 -16.81315 -15.98814 -15.85690 -15.33418 -15.25585 -14.72155 -14.50439 -14.17864 -13.85080 -13.75741 -13.24985 -12.89208 -12.58143 -12.44312 -12.30462 -12.20249 -11.94975 -11.69782 -11.60121 -11.48231 -11.34607 -11.19778 -11.06640 -10.96667 -10.86517 -10.53791 -10.40786 -10.23184 -10.08304 -9.56281 -9.49954 -9.38008 -9.20436 -9.00051 -7.99075 -7.46170 -7.26373 -6.72653 -4.37182 2.71616 3.06091 3.07952 3.10585 3.12694 3.15246 3.93781 4.03412 4.31425 4.32317 4.61245 4.65271 4.73188 4.80920 4.88434 5.03007 5.21579 5.36743 5.41994 5.51895 5.56725 5.60255 5.64265 5.67767 5.71830 5.79746 5.82643 5.84652 5.94296 5.96758 6.08074 6.16532 6.25735 6.28195 6.34655 6.40431 6.43541 6.48223 6.93506 7.08815 7.23471 7.25305 7.31344 7.37065 7.59713 7.63931 7.86863 8.05724 8.11587 8.30546 8.64213 8.90117 8.96827 10.21895 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.003033 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.710668 B = 9228.879939 C = 9820.386772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.070 4.070 12 C -0.211 4.211 13 C 0.124 3.876 14 N -0.660 5.660 15 C 0.087 3.913 16 H 0.056 0.944 17 C -0.195 4.195 18 H 0.108 0.892 19 C -0.139 4.139 20 C 0.059 3.941 21 O -0.371 6.371 22 C 0.064 3.936 23 H 0.120 0.880 24 C -0.056 4.056 25 C -0.123 4.123 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.098 4.098 29 C -0.160 4.160 30 H 0.278 0.722 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.346 0.654 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -14.127 -0.220 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.089 4.089 12 C -0.212 4.212 13 C -0.003 4.003 14 N -0.292 5.292 15 C -0.024 4.024 16 H 0.074 0.926 17 C -0.214 4.214 18 H 0.126 0.874 19 C -0.176 4.176 20 C -0.017 4.017 21 O -0.290 6.290 22 C 0.006 3.994 23 H 0.137 0.863 24 C -0.057 4.057 25 C -0.161 4.161 26 C -0.177 4.177 27 C -0.154 4.154 28 C -0.117 4.117 29 C -0.179 4.179 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.166 0.834 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.328 -14.380 0.375 16.144 hybrid contribution -0.485 1.258 -0.740 1.538 sum -7.813 -13.122 -0.365 15.276 Atomic orbital electron populations 1.69812 1.07438 1.28865 1.36515 1.25883 0.94798 1.01187 0.92395 0.86256 0.80886 0.81046 0.78483 1.18478 1.19818 1.20025 1.19629 0.96354 0.90727 1.42693 0.90532 1.17641 0.91265 0.92052 0.88024 1.21035 1.03350 0.93426 1.06568 1.20337 0.95087 0.96326 0.97120 1.18893 1.00388 0.92939 1.09011 1.20636 0.92608 0.96515 0.90569 1.60578 1.16387 1.02893 1.49384 1.22131 0.93027 0.91717 0.95497 0.92591 1.24436 0.96481 1.00812 0.99679 0.87440 1.22562 1.01395 0.99113 0.94547 1.24047 0.88850 0.91447 0.97343 1.87676 1.45977 1.56463 1.38928 1.23239 0.96131 0.98415 0.81612 0.86334 1.22078 0.96794 0.93778 0.93028 1.22720 0.96080 0.95256 1.02022 1.22860 0.96128 0.97003 1.01688 1.22667 0.97564 0.94132 1.01072 1.20541 0.98295 0.93079 0.99756 1.21290 0.99009 0.96332 1.01261 0.91087 0.89083 0.89435 0.91412 0.96173 0.83355 0.90927 0.89542 0.90784 0.91282 0.89633 0.90877 0.90241 0.91609 0.91156 0.89747 0.89944 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.91 55.55 0.61 -20.00 16 2 C 0.07 1.85 5.22 -17.34 -0.09 1.76 16 3 Si 0.91 18.68 29.58 -169.99 -5.03 13.65 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -12.28 9.06 -37.74 -0.34 -12.62 16 8 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 9 C 0.11 2.97 5.55 -106.82 -0.59 2.38 16 10 C -0.22 -5.45 9.80 -38.87 -0.38 -5.84 16 11 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 12 C -0.21 -4.34 5.41 -104.33 -0.56 -4.91 16 13 C 0.12 2.04 5.73 -4.98 -0.03 2.01 16 14 N -0.66 -9.81 4.41 -120.47 -0.53 -10.34 16 15 C 0.09 1.09 4.02 -79.03 -0.32 0.78 16 16 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 17 C -0.20 -2.32 4.50 -100.57 -0.45 -2.77 16 18 H 0.11 1.21 7.27 -51.93 -0.38 0.83 16 19 C -0.14 -1.56 6.59 -25.16 -0.17 -1.73 16 20 C 0.06 0.68 7.87 38.82 0.31 0.99 16 21 O -0.37 -5.45 11.31 -28.67 -0.32 -5.77 16 22 C 0.06 0.89 4.98 -38.05 -0.19 0.70 16 23 H 0.12 1.92 6.00 -51.93 -0.31 1.61 16 24 C -0.06 -0.68 1.08 -167.99 -0.18 -0.86 16 25 C -0.12 -1.47 6.85 -26.36 -0.18 -1.66 16 26 C -0.14 -1.44 8.08 -25.72 -0.21 -1.64 16 27 C -0.12 -1.20 6.93 -26.36 -0.18 -1.38 16 28 C -0.10 -2.18 9.67 -39.66 -0.38 -2.57 16 29 C -0.16 -4.05 8.66 -38.87 -0.34 -4.39 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 31 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.07 1.07 6.01 -51.92 -0.31 0.76 16 34 H 0.02 0.32 8.08 -51.94 -0.42 -0.10 16 35 H 0.35 5.31 7.86 -39.29 -0.31 5.00 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.07 7.03 -51.93 -0.37 0.71 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.99 7.22 -51.93 -0.37 0.62 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.72 8.03 -51.93 -0.42 0.31 16 45 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 47 H 0.12 3.09 6.26 -52.49 -0.33 2.76 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -26.83 366.42 -11.84 -38.68 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.41 Total: 11.92 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -4.68 Total: -33.67 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.08 Total: -30.34 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.32 Total: -5.77 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.83 -11.84 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451490293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.633 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds