Wall clock time and date at job start Fri Apr 10 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48503 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47364 * 300.00275 * 3 2 1 6 6 H 1.48501 * 109.46945 * 60.00344 * 3 2 1 7 7 C 1.39947 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99869 * 154.22630 * 7 2 1 9 9 C 1.41393 * 119.99653 * 334.23221 * 7 2 1 10 10 C 1.40717 * 120.24595 * 334.75965 * 9 7 2 11 11 C 1.37617 * 119.74587 * 179.71942 * 10 9 7 12 12 C 1.38638 * 120.24655 * 0.54626 * 11 10 9 13 13 C 1.50703 * 119.74724 * 179.73596 * 12 11 10 14 14 N 1.46897 * 109.46968 * 270.01826 * 13 12 11 15 15 C 1.46903 * 110.99955 * 180.02562 * 14 13 12 16 16 H 1.09004 * 113.50520 * 20.88242 * 15 14 13 17 17 C 1.50982 * 114.52561 * 246.71224 * 15 14 13 18 18 H 1.08999 * 115.07611 * 321.70437 * 17 15 14 19 19 C 1.52814 * 125.70507 * 116.33596 * 17 15 14 20 20 C 1.56101 * 100.08005 * 126.74966 * 19 17 15 21 21 O 1.45484 * 105.74664 * 336.76281 * 20 19 17 22 22 C 1.38630 * 107.04722 * 347.99911 * 21 20 19 23 23 H 1.09000 * 108.49830 * 285.79252 * 22 21 20 24 24 C 1.47458 * 138.30293 * 131.29452 * 22 21 20 25 25 C 1.52729 * 125.43133 * 342.64317 * 24 22 21 26 26 C 1.53985 * 86.69786 * 108.94255 * 25 24 22 27 27 C 1.52714 * 125.48031 * 100.13720 * 24 22 21 28 28 C 1.38629 * 120.50221 * 359.75097 * 12 11 10 29 29 C 1.37625 * 120.24879 * 359.96190 * 28 12 11 30 30 H 0.96998 * 119.99770 * 174.23443 * 1 2 3 31 31 H 1.08001 * 120.12766 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.87605 * 180.27413 * 11 10 9 33 33 H 1.08994 * 109.47035 * 30.01934 * 13 12 11 34 34 H 1.09005 * 109.46875 * 150.01939 * 13 12 11 35 35 H 1.00903 * 111.00073 * 303.95462 * 14 13 12 36 36 H 1.09002 * 111.28517 * 244.45875 * 19 17 15 37 37 H 1.08999 * 111.28572 * 8.99016 * 19 17 15 38 38 H 1.08996 * 110.19816 * 95.82619 * 20 19 17 39 39 H 1.09001 * 110.19669 * 217.61788 * 20 19 17 40 40 H 1.09000 * 113.67289 * 223.39280 * 25 24 22 41 41 H 1.08998 * 113.67645 * 354.48978 * 25 24 22 42 42 H 1.08997 * 113.57206 * 269.95558 * 26 25 24 43 43 H 1.08999 * 113.63953 * 139.20481 * 26 25 24 44 44 H 1.09002 * 113.67460 * 5.54219 * 27 24 22 45 45 H 1.08994 * 113.67281 * 136.54613 * 27 24 22 46 46 H 1.08004 * 119.88054 * 179.97438 * 28 12 11 47 47 H 1.07999 * 120.12622 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0081 -1.2119 -0.0005 8 1 3.0075 -1.2582 -0.4072 9 6 1.4065 -2.3758 0.5313 10 6 0.3952 -2.2697 1.5040 11 6 -0.1872 -3.4091 2.0104 12 6 0.2267 -4.6582 1.5740 13 6 -0.4148 -5.8986 2.1405 14 7 0.3301 -6.3361 3.3286 15 6 -0.2676 -7.5462 3.9087 16 1 -0.8882 -8.1037 3.2072 17 6 -0.8842 -7.3485 5.2726 18 1 -0.3356 -6.6790 5.9350 19 6 -2.3649 -7.5110 5.6139 20 6 -2.2618 -8.5106 6.8085 21 8 -0.9891 -9.1953 6.6416 22 6 -0.5268 -8.8899 5.3709 23 1 -1.1153 -9.4508 4.6448 24 6 0.7185 -8.4210 4.7354 25 6 1.8871 -7.7571 5.4608 26 6 2.6686 -9.0594 5.2071 27 6 1.7310 -9.3050 4.0104 28 6 1.2264 -4.7748 0.6207 29 6 1.8189 -3.6488 0.0961 30 1 -0.4850 -0.8358 -0.0844 31 1 0.0739 -1.2978 1.8482 32 1 -0.9667 -3.3300 2.7538 33 1 -1.4458 -5.6800 2.4182 34 1 -0.4003 -6.6898 1.3908 35 1 1.3043 -6.4831 3.1107 36 1 -2.8049 -6.5642 5.9271 37 1 -2.9178 -7.9446 4.7807 38 1 -2.2766 -7.9693 7.7545 39 1 -3.0830 -9.2264 6.7721 40 1 2.2941 -6.8930 4.9356 41 1 1.6933 -7.5612 6.5153 42 1 2.5601 -9.7951 6.0040 43 1 3.7076 -8.8969 4.9204 44 1 1.4128 -10.3427 3.9094 45 1 2.0926 -8.8793 3.0745 46 1 1.5414 -5.7529 0.2882 47 1 2.5978 -3.7420 -0.6462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451490296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:52 Heat of formation + Delta-G solvation = 67.984553 kcal Electronic energy + Delta-G solvation = -25820.075925 eV Core-core repulsion = 22356.560288 eV Total energy + Delta-G solvation = -3463.515637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30212 -38.29573 -37.86908 -35.53623 -34.15986 -32.82804 -30.82764 -29.76492 -29.23180 -26.30714 -26.09540 -24.71460 -23.51240 -22.56189 -22.01044 -21.10410 -20.38656 -19.99402 -18.52092 -17.91506 -16.87155 -16.08572 -15.94534 -15.53175 -14.78490 -14.67591 -14.55064 -14.22163 -14.15771 -13.98152 -13.45998 -13.26536 -12.59915 -12.45943 -12.39284 -12.22672 -12.05630 -11.89634 -11.64848 -11.59043 -11.50269 -11.30283 -11.10464 -11.00040 -10.77890 -10.46664 -10.43590 -10.35152 -10.34090 -9.78798 -9.63216 -9.47743 -9.10406 -8.95166 -8.14061 -7.67725 -7.50283 -7.17747 -4.43891 2.69076 2.85099 2.88451 3.15353 3.25587 3.34331 3.99192 4.01214 4.16413 4.33447 4.43812 4.53436 4.57835 4.68988 4.79331 4.86960 5.03788 5.17053 5.27327 5.31216 5.38153 5.44437 5.53095 5.61126 5.63308 5.65365 5.68127 5.74542 5.79762 5.82735 5.92356 5.96332 6.09637 6.13862 6.23598 6.28296 6.31026 6.34770 6.78177 6.89384 7.01963 7.15064 7.34809 7.40029 7.59261 7.72186 7.77998 7.83046 7.99040 8.20493 8.32523 8.76342 8.89381 10.04722 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.002756 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.516030 B =10155.549027 C =10696.698190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.039 3.961 3 Si 1.069 2.931 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.223 4.223 11 C -0.057 4.057 12 C -0.226 4.226 13 C 0.126 3.874 14 N -0.663 5.663 15 C 0.084 3.916 16 H 0.081 0.919 17 C -0.150 4.150 18 H 0.118 0.882 19 C -0.144 4.144 20 C 0.055 3.945 21 O -0.362 6.362 22 C 0.052 3.948 23 H 0.070 0.930 24 C -0.068 4.068 25 C -0.107 4.107 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.074 4.074 29 C -0.230 4.230 30 H 0.300 0.700 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.341 0.659 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -14.913 9.367 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.242 4.242 11 C -0.076 4.076 12 C -0.228 4.228 13 C -0.001 4.001 14 N -0.295 5.295 15 C -0.027 4.027 16 H 0.098 0.902 17 C -0.170 4.170 18 H 0.135 0.865 19 C -0.182 4.182 20 C -0.021 4.021 21 O -0.281 6.281 22 C -0.007 4.007 23 H 0.088 0.912 24 C -0.069 4.069 25 C -0.145 4.145 26 C -0.177 4.177 27 C -0.170 4.170 28 C -0.092 4.092 29 C -0.250 4.250 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.161 0.839 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.087 -12.975 9.986 16.506 hybrid contribution 0.163 -2.276 -0.816 2.424 sum -1.924 -15.251 9.171 17.900 Atomic orbital electron populations 1.70400 1.08255 1.34348 1.29085 1.27008 0.95675 1.04318 0.91284 0.83599 0.75543 0.73515 0.78063 1.20148 1.20428 1.19930 1.20613 1.03292 0.94255 1.36928 0.90719 1.17681 0.90547 0.92520 0.89544 1.21147 1.03995 0.97033 1.02040 1.20422 0.97709 0.92312 0.97178 1.18828 1.05148 0.92945 1.05835 1.20575 0.96647 0.94226 0.88681 1.60746 1.06415 1.30185 1.32118 1.22858 0.96019 0.90680 0.93151 0.90163 1.24557 0.95065 0.97714 0.99657 0.86452 1.22655 0.97285 0.99928 0.98344 1.24148 0.85213 0.93729 0.99009 1.87728 1.36542 1.70766 1.33059 1.22427 0.97303 0.95235 0.85768 0.91231 1.22281 0.91795 0.96398 0.96465 1.22586 0.93795 0.97466 1.00624 1.22853 0.98545 0.98014 0.98246 1.22806 0.96527 0.99767 0.97870 1.20400 0.95982 0.96338 0.96529 1.20888 1.06080 0.92669 1.05351 0.88664 0.87823 0.89320 0.91986 0.96331 0.83942 0.90098 0.90723 0.90197 0.91401 0.88446 0.91003 0.90304 0.91259 0.91317 0.89434 0.89807 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.19 12.31 55.55 0.68 -20.51 16 2 C 0.04 0.99 4.93 -17.34 -0.09 0.90 16 3 Si 1.07 21.66 30.00 -169.99 -5.10 16.56 16 4 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.52 -13.90 8.99 -37.74 -0.34 -14.24 16 8 H 0.07 1.95 7.96 -52.49 -0.42 1.53 16 9 C 0.10 2.63 5.30 -106.83 -0.57 2.07 16 10 C -0.22 -5.67 7.96 -38.87 -0.31 -5.98 16 11 C -0.06 -1.30 9.67 -39.66 -0.38 -1.68 16 12 C -0.23 -4.68 5.41 -104.33 -0.56 -5.25 16 13 C 0.13 2.11 5.64 -4.98 -0.03 2.08 16 14 N -0.66 -9.75 6.24 -120.53 -0.75 -10.50 16 15 C 0.08 1.02 3.79 -79.09 -0.30 0.72 16 16 H 0.08 0.97 7.35 -51.93 -0.38 0.58 16 17 C -0.15 -1.80 4.33 -100.57 -0.44 -2.23 16 18 H 0.12 1.56 7.27 -51.93 -0.38 1.18 16 19 C -0.14 -1.46 6.78 -25.17 -0.17 -1.63 16 20 C 0.05 0.53 7.87 38.82 0.31 0.83 16 21 O -0.36 -4.55 11.31 -28.67 -0.32 -4.87 16 22 C 0.05 0.60 4.91 -38.10 -0.19 0.42 16 23 H 0.07 0.79 7.28 -51.93 -0.38 0.41 16 24 C -0.07 -0.76 0.98 -168.00 -0.16 -0.93 16 25 C -0.11 -1.19 6.65 -26.36 -0.18 -1.36 16 26 C -0.14 -1.36 8.08 -25.72 -0.21 -1.57 16 27 C -0.13 -1.33 7.90 -26.36 -0.21 -1.53 16 28 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 29 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 30 H 0.30 8.17 6.70 -40.82 -0.27 7.90 16 31 H 0.10 2.75 6.49 -52.49 -0.34 2.41 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.34 5.00 7.65 -39.29 -0.30 4.70 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 1.14 7.12 -51.93 -0.37 0.77 16 41 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.58 8.06 -52.48 -0.42 1.15 16 47 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -27.15 371.17 -12.02 -39.18 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.54 Total: 11.85 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -4.58 Total: -37.30 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: -0.07 Total: -31.00 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.32 Total: -4.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.10 Total: 16.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.15 -12.02 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451490296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.164 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds