Wall clock time and date at job start Fri Apr 10 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99801 * 3 2 1 5 5 H 1.48505 * 109.47302 * 29.99696 * 3 2 1 6 6 H 1.48498 * 109.47131 * 149.99498 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99966 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.47251 * 135.94380 * 359.63129 * 13 11 10 15 15 C 1.52766 * 87.63246 * 153.80245 * 14 13 11 16 16 C 1.53354 * 115.68413 * 141.55258 * 15 14 13 17 17 C 1.55126 * 103.91486 * 108.94856 * 16 15 14 18 18 C 1.54977 * 102.89227 * 37.09573 * 17 16 15 19 19 C 1.52964 * 116.24617 * 269.29690 * 15 14 13 20 20 C 1.47244 * 135.94245 * 180.02562 * 13 11 10 21 21 H 1.09008 * 113.50915 * 321.02314 * 20 13 11 22 22 C 1.50697 * 113.51009 * 91.52657 * 20 13 11 23 23 C 1.38230 * 120.00022 * 20.22489 * 22 20 13 24 24 C 1.38238 * 120.00462 * 179.76759 * 23 22 20 25 25 C 1.38243 * 119.99350 * 0.49927 * 24 23 22 26 26 C 1.38229 * 119.99955 * 359.75279 * 25 24 23 27 27 C 1.38235 * 120.00013 * 200.48959 * 22 20 13 28 28 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46932 * 60.00111 * 9 7 2 30 30 H 1.09005 * 109.47238 * 300.00488 * 9 7 2 31 31 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 32 32 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 33 33 H 1.08990 * 113.50725 * 268.47262 * 14 13 11 34 34 H 1.09003 * 113.50536 * 39.04485 * 14 13 11 35 35 H 1.09001 * 110.53891 * 227.55064 * 16 15 14 36 36 H 1.08998 * 110.53903 * 350.34755 * 16 15 14 37 37 H 1.09003 * 110.72807 * 278.74724 * 17 16 15 38 38 H 1.08995 * 110.88395 * 155.51839 * 17 16 15 39 39 H 1.09006 * 110.47314 * 203.87313 * 18 17 16 40 40 H 1.08999 * 110.47820 * 81.25754 * 18 17 16 41 41 H 1.08996 * 110.11051 * 347.27726 * 19 15 14 42 42 H 1.08994 * 110.11289 * 108.92195 * 19 15 14 43 43 H 1.08008 * 120.00051 * 359.97438 * 23 22 20 44 44 H 1.07997 * 120.00413 * 180.22480 * 24 23 22 45 45 H 1.07995 * 119.99457 * 179.72545 * 25 24 23 46 46 H 1.08003 * 119.99634 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.00076 * 0.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0009 12 8 6.1349 -1.5863 0.0015 13 7 6.2024 -3.8038 0.0003 14 6 5.8447 -5.2322 0.0062 15 6 7.1848 -5.5055 -0.6745 16 6 7.9163 -6.7733 -0.2170 17 6 7.7916 -7.7338 -1.4288 18 6 7.9273 -6.7791 -2.6420 19 6 7.1803 -5.4992 -2.2041 20 6 7.6182 -4.2083 0.0005 21 1 8.2500 -3.5801 -0.6276 22 6 8.1856 -4.4099 1.3819 23 6 7.3383 -4.6289 2.4519 24 6 7.8590 -4.8186 3.7184 25 6 9.2266 -4.7789 3.9165 26 6 10.0736 -4.5547 2.8473 27 6 9.5531 -4.3702 1.5800 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 3.6585 -3.1502 -0.8893 32 1 3.6578 -3.1506 0.8906 33 1 5.7706 -5.6577 1.0068 34 1 4.9825 -5.4671 -0.6180 35 1 8.9637 -6.5560 -0.0076 36 1 7.4302 -7.1998 0.6604 37 1 6.8192 -8.2263 -1.4322 38 1 8.5954 -8.4700 -1.4254 39 1 7.4554 -7.2133 -3.5235 40 1 8.9766 -6.5597 -2.8391 41 1 6.1559 -5.5173 -2.5759 42 1 7.6994 -4.6162 -2.5768 43 1 6.2696 -4.6552 2.2980 44 1 7.1972 -4.9934 4.5538 45 1 9.6331 -4.9227 4.9066 46 1 11.1420 -4.5233 3.0022 47 1 10.2149 -4.1944 0.7448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457267213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:00 Heat of formation + Delta-G solvation = 14.189345 kcal Electronic energy + Delta-G solvation = -26287.705314 eV Core-core repulsion = 22821.856942 eV Total energy + Delta-G solvation = -3465.848372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66631 -38.77283 -38.23342 -35.78987 -33.47106 -31.74950 -31.17958 -30.93343 -29.38383 -28.93222 -26.50155 -26.01760 -24.47199 -22.62318 -21.97251 -20.88216 -20.74352 -19.03232 -18.54986 -17.19910 -16.78102 -16.34630 -16.01643 -15.49928 -15.36694 -15.01571 -14.89556 -14.46249 -14.10433 -14.05481 -13.64347 -13.46242 -13.27027 -12.72302 -12.69045 -12.54588 -12.41323 -11.87919 -11.83041 -11.50680 -11.32465 -11.32028 -11.26811 -11.07952 -10.96459 -10.90313 -10.75999 -10.44559 -10.15938 -10.03365 -9.77255 -9.25201 -9.16713 -9.04925 -8.78929 -8.56051 -8.49174 -6.02566 -4.01226 1.16593 1.27495 2.94939 3.13612 3.38578 3.45016 3.56705 3.62279 4.04563 4.23007 4.40697 4.51723 4.62952 4.73529 4.82540 4.89260 4.92326 4.96815 5.05281 5.13933 5.24821 5.32998 5.35382 5.38404 5.42406 5.44821 5.54720 5.58569 5.63983 5.71906 5.74410 5.81313 5.86897 5.88936 5.95999 5.99229 6.07801 6.11068 6.12723 6.15788 6.33442 6.38718 6.49393 6.70584 6.85284 7.36715 7.43789 7.77844 7.97911 8.49665 8.63697 9.00219 9.60606 11.10238 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003726 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.492212 B = 7513.398398 C = 8711.376059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.113 4.113 11 C 0.540 3.460 12 O -0.535 6.535 13 N -0.644 5.644 14 C 0.105 3.895 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.097 4.097 20 C 0.176 3.824 21 H 0.091 0.909 22 C -0.078 4.078 23 C -0.105 4.105 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.107 4.107 28 H 0.263 0.737 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.829 -18.884 1.363 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.153 4.153 11 C 0.332 3.668 12 O -0.410 6.410 13 N -0.381 5.381 14 C -0.018 4.018 15 C -0.087 4.087 16 C -0.142 4.142 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.135 4.135 20 C 0.072 3.928 21 H 0.109 0.891 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.126 4.126 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.828 -17.923 1.346 27.511 hybrid contribution 0.282 0.997 0.157 1.048 sum 21.110 -16.926 1.504 27.099 Atomic orbital electron populations 1.69913 1.06270 1.26957 1.51092 1.24956 0.94698 0.99183 0.94306 0.86811 0.80646 0.83427 0.78783 1.20201 1.21396 1.18558 1.21092 0.89187 0.94565 1.51344 0.90940 1.19385 0.96461 0.90120 0.97661 1.21617 0.87350 1.03135 1.03193 1.21252 0.90908 0.80746 0.73873 1.90666 1.70726 1.30275 1.49340 1.50027 1.07367 1.05522 1.75181 1.23258 0.97598 0.80358 1.00631 1.22196 0.96276 0.94200 0.95988 1.22150 1.00595 0.93518 0.97933 1.22536 1.01761 0.97307 0.94557 1.22418 1.00369 0.95327 0.97960 1.21800 1.01507 0.98297 0.91885 1.21113 0.85468 0.93711 0.92489 0.89072 1.19795 0.93677 0.99802 0.94659 1.21171 1.00071 0.98739 0.92351 1.21172 0.95397 1.00100 0.97001 1.21151 0.93677 1.00309 0.98839 1.21084 0.99661 1.00399 0.92741 1.20907 0.94221 1.00109 0.97337 0.92718 0.95863 0.96264 0.89723 0.89799 0.89493 0.89943 0.90843 0.91156 0.91341 0.91653 0.91551 0.91679 0.90814 0.91237 0.85702 0.86018 0.86236 0.86108 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.97 27.47 -169.99 -4.67 18.30 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.87 6.54 56.52 0.37 -6.50 16 7 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 10 C -0.11 -2.31 5.46 -27.89 -0.15 -2.46 16 11 C 0.54 10.59 8.08 -10.98 -0.09 10.50 16 12 O -0.53 -12.72 16.76 5.56 0.09 -12.62 16 13 N -0.64 -9.54 2.85 -178.60 -0.51 -10.05 16 14 C 0.10 1.14 6.92 -7.78 -0.05 1.08 16 15 C -0.09 -0.82 1.18 -154.72 -0.18 -1.00 16 16 C -0.10 -0.80 5.30 -25.42 -0.13 -0.94 16 17 C -0.12 -0.83 6.92 -24.56 -0.17 -1.00 16 18 C -0.12 -0.89 6.85 -24.88 -0.17 -1.06 16 19 C -0.10 -0.89 6.33 -25.95 -0.16 -1.06 16 20 C 0.18 2.18 4.15 -72.96 -0.30 1.88 16 21 H 0.09 1.21 7.92 -51.92 -0.41 0.80 16 22 C -0.08 -0.92 4.10 -104.63 -0.43 -1.35 16 23 C -0.11 -1.26 8.54 -39.58 -0.34 -1.60 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.11 -1.11 9.30 -39.58 -0.37 -1.48 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.09 0.85 5.56 -51.93 -0.29 0.56 16 34 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 35 H 0.07 0.58 7.41 -51.93 -0.38 0.19 16 36 H 0.07 0.54 7.83 -51.93 -0.41 0.13 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 42 H 0.07 0.69 7.80 -51.93 -0.40 0.29 16 43 H 0.13 1.53 5.58 -52.48 -0.29 1.24 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 47 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -34.69 373.42 -10.54 -45.23 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.58 Total: -2.14 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -4.27 Total: -16.86 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.26 Total: -37.53 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.67 Total: 18.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.69 -10.54 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457267213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.417 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds