Wall clock time and date at job start Fri Apr 10 2020 22:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.80902 * 2 1 4 4 C 1.34780 * 120.00061 * 59.47252 * 3 2 1 5 5 O 1.21286 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00019 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47276 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47380 * 54.99537 * 7 6 4 9 9 C 1.50703 * 109.47169 * 294.99952 * 7 6 4 10 10 H 1.08001 * 120.00197 * 121.36340 * 9 7 6 11 11 C 1.37878 * 119.99937 * 301.36590 * 9 7 6 12 12 N 1.31515 * 119.99757 * 6.18019 * 11 9 7 13 13 Si 1.86801 * 119.99925 * 186.17498 * 11 9 7 14 14 H 1.48499 * 109.47001 * 60.00452 * 13 11 9 15 15 H 1.48505 * 109.46868 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47226 * 300.00135 * 13 11 9 17 17 C 1.50698 * 109.47295 * 175.00366 * 7 6 4 18 18 C 1.38235 * 119.99948 * 211.37105 * 17 7 6 19 19 C 1.38238 * 120.00133 * 179.78261 * 18 17 7 20 20 C 1.38231 * 119.99836 * 0.44262 * 19 18 17 21 21 C 1.38233 * 119.99895 * 359.81123 * 20 19 18 22 22 C 1.38228 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.53024 * 109.64045 * 120.52482 * 2 1 3 24 24 C 1.50063 * 110.14495 * 169.12474 * 23 2 1 25 25 C 1.29446 * 124.07833 * 342.86757 * 24 23 2 26 26 C 1.50063 * 124.07249 * 0.47373 * 25 24 23 27 27 C 1.53028 * 110.14882 * 342.86541 * 26 25 24 28 28 H 1.09000 * 109.47241 * 180.52240 * 1 2 3 29 29 H 1.09000 * 109.47598 * 300.52858 * 1 2 3 30 30 H 1.09005 * 109.47093 * 60.52976 * 1 2 3 31 31 H 0.96993 * 119.99682 * 239.46707 * 3 2 1 32 32 H 1.09003 * 109.47167 * 300.00062 * 6 4 3 33 33 H 1.09003 * 109.47301 * 59.99423 * 6 4 3 34 34 H 0.97007 * 119.99883 * 180.02562 * 12 11 9 35 35 H 1.08007 * 119.99918 * 359.97438 * 18 17 7 36 36 H 1.08001 * 119.99733 * 180.27352 * 19 18 17 37 37 H 1.08000 * 119.99727 * 179.83105 * 20 19 18 38 38 H 1.08003 * 119.99619 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.00447 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.35989 * 289.32905 * 23 2 1 41 41 H 1.08998 * 109.35765 * 49.05303 * 23 2 1 42 42 H 1.08002 * 117.96600 * 162.89235 * 24 23 2 43 43 H 1.07997 * 117.96345 * 180.44783 * 25 24 23 44 44 H 1.09008 * 109.35718 * 222.65970 * 26 25 24 45 45 H 1.08998 * 109.36236 * 103.07459 * 26 25 24 46 46 H 1.09004 * 109.64122 * 289.75562 * 27 26 25 47 47 H 1.09001 * 109.64316 * 169.12081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0265 1.3784 0.0000 4 6 1.6971 2.2133 1.0054 5 8 0.9892 1.8237 1.9100 6 6 2.2082 3.6309 1.0057 7 6 1.6911 4.3593 2.2478 8 1 1.9675 3.7974 3.1400 9 6 0.1905 4.4766 2.1731 10 1 -0.4239 4.0521 2.9532 11 6 -0.3980 5.1259 1.1086 12 7 0.3390 5.5358 0.0994 13 14 -2.2422 5.4233 1.0998 14 1 -2.6158 6.2501 2.2754 15 1 -2.6230 6.1342 -0.1472 16 1 -2.9538 4.1214 1.1639 17 6 2.2999 5.7363 2.3126 18 6 2.5435 6.3274 3.5382 19 6 3.1062 7.5887 3.5977 20 6 3.4167 8.2626 2.4315 21 6 3.1682 7.6737 1.2058 22 6 2.6097 6.4107 1.1464 23 6 2.0443 -0.7320 1.2415 24 6 3.5211 -0.9720 1.1252 25 6 4.1818 -0.9034 0.0141 26 6 3.5650 -0.5643 -1.3112 27 6 2.0456 -0.7338 -1.2443 28 1 -0.3634 -1.0276 0.0094 29 1 -0.3634 0.5220 0.8852 30 1 -0.3633 0.5056 -0.8947 31 1 2.5923 1.6900 -0.7235 32 1 3.2982 3.6242 1.0155 33 1 1.8562 4.1443 0.1109 34 1 -0.0750 5.9929 -0.6494 35 1 2.2972 5.8024 4.4494 36 1 3.3005 8.0486 4.5554 37 1 3.8537 9.2492 2.4780 38 1 3.4112 8.2002 0.2947 39 1 2.4160 5.9504 0.1888 40 1 1.8452 -0.1270 2.1261 41 1 1.5310 -1.6890 1.3352 42 1 4.0666 -1.2176 2.0243 43 1 5.2429 -1.1022 0.0429 44 1 3.9690 -1.2259 -2.0776 45 1 3.8025 0.4684 -1.5666 46 1 1.7979 -1.7930 -1.1741 47 1 1.5896 -0.3060 -2.1372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458345719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:07 Heat of formation + Delta-G solvation = -1.806224 kcal Electronic energy + Delta-G solvation = -26996.528485 eV Core-core repulsion = 23529.986493 eV Total energy + Delta-G solvation = -3466.541992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00631 -38.36482 -37.25550 -34.25808 -33.36639 -31.25814 -30.79423 -30.71310 -29.77685 -28.20991 -26.34739 -25.74470 -23.13298 -22.71402 -21.50772 -20.80963 -19.79477 -19.11119 -17.50524 -16.71688 -15.99829 -15.82104 -15.47039 -14.92785 -14.52022 -14.24360 -13.97659 -13.73239 -13.69717 -13.50930 -12.97288 -12.89412 -12.53248 -12.34635 -12.19711 -12.08553 -11.82688 -11.66068 -11.57847 -11.41599 -11.29520 -11.15958 -10.87569 -10.76218 -10.36339 -10.22594 -10.17645 -10.11298 -9.93431 -9.27203 -9.14782 -8.88289 -8.51169 -8.32004 -8.24257 -7.78855 -7.42281 -5.96583 -4.03983 2.43544 2.49961 2.58824 3.34736 3.36970 3.42988 3.83169 3.96300 4.45298 4.75437 4.80364 4.98530 5.03906 5.27355 5.31086 5.44288 5.46200 5.52873 5.79966 5.81699 5.84778 5.88818 5.95122 6.00695 6.02961 6.06760 6.14297 6.21767 6.33035 6.42653 6.44497 6.50806 6.66227 6.71597 6.76834 6.80035 6.84743 7.10122 7.16295 7.22569 7.29147 7.31089 7.52107 7.57378 7.73076 7.99023 8.12362 8.21172 8.37592 8.44050 8.92975 9.36438 9.59112 10.98004 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.004792 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.069272 B = 5841.482929 C = 6968.277414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.182 3.818 3 N -0.736 5.736 4 C 0.530 3.470 5 O -0.527 6.527 6 C -0.141 4.141 7 C 0.090 3.910 8 H 0.035 0.965 9 C -0.467 4.467 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.279 1.279 17 C -0.031 4.031 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.106 4.106 24 C -0.137 4.137 25 C -0.169 4.169 26 C -0.087 4.087 27 C -0.122 4.122 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.391 0.609 32 H 0.047 0.953 33 H 0.135 0.865 34 H 0.261 0.739 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -8.504 -4.006 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.096 3.904 3 N -0.390 5.390 4 C 0.319 3.681 5 O -0.403 6.403 6 C -0.181 4.181 7 C 0.071 3.929 8 H 0.054 0.946 9 C -0.505 4.505 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.031 4.031 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.187 4.187 26 C -0.124 4.124 27 C -0.159 4.159 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.152 0.848 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.166 0.834 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.692 -8.694 -3.500 11.516 hybrid contribution -0.789 0.566 -0.406 1.053 sum 5.903 -8.128 -3.906 10.778 Atomic orbital electron populations 1.22200 0.94498 1.01278 1.04100 1.20096 0.93671 0.82471 0.94180 1.46251 1.54606 1.11031 1.27137 1.21002 0.79254 0.87426 0.80425 1.90527 1.36435 1.76961 1.36350 1.21995 0.97405 0.91425 1.07266 1.17607 0.95049 0.87575 0.92703 0.94640 1.20951 0.90125 1.32767 1.06627 0.92293 1.24850 0.97854 0.95637 0.95501 1.69532 1.34579 1.40603 1.08317 0.86660 0.86037 0.78259 0.77153 1.20445 1.21466 1.20435 1.20390 0.91950 0.98896 0.91902 1.20928 1.00903 0.95470 0.97695 1.20799 1.02464 0.95798 0.97051 1.20776 1.04013 0.99150 0.93272 1.21084 1.01876 0.96982 0.96348 1.21625 0.93738 0.93706 1.00333 1.20941 0.92583 1.00327 1.00517 1.22062 0.96543 0.99460 0.97405 1.21888 0.99149 1.02995 0.94645 1.20380 0.94954 1.01509 0.95605 1.21906 0.95502 1.00824 0.97713 0.92947 0.89553 0.92869 0.77523 0.93466 0.84755 0.92897 0.87679 0.88110 0.88326 0.88102 0.83407 0.88419 0.90878 0.88500 0.88491 0.91348 0.90974 0.90822 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.42 37.16 0.31 -2.24 16 2 C 0.18 2.64 0.67 -131.60 -0.09 2.55 16 3 N -0.74 -11.97 4.60 -47.41 -0.22 -12.18 16 4 C 0.53 10.88 6.97 -10.99 -0.08 10.80 16 5 O -0.53 -12.35 11.24 5.55 0.06 -12.29 16 6 C -0.14 -3.00 4.22 -27.89 -0.12 -3.12 16 7 C 0.09 2.15 1.98 -92.93 -0.18 1.96 16 8 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 9 C -0.47 -12.41 7.27 -34.44 -0.25 -12.66 16 10 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 11 C 0.06 1.59 5.14 -17.82 -0.09 1.50 16 12 N -0.89 -22.44 7.74 55.43 0.43 -22.01 16 13 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C -0.03 -0.70 4.68 -104.63 -0.49 -1.19 16 18 C -0.13 -2.82 9.70 -39.58 -0.38 -3.21 16 19 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 20 C -0.15 -2.91 10.05 -39.59 -0.40 -3.31 16 21 C -0.14 -2.89 10.05 -39.59 -0.40 -3.29 16 22 C -0.08 -1.67 7.56 -39.59 -0.30 -1.97 16 23 C -0.11 -1.54 4.82 -28.18 -0.14 -1.67 16 24 C -0.14 -1.77 9.68 -35.90 -0.35 -2.12 16 25 C -0.17 -1.96 9.74 -35.90 -0.35 -2.31 16 26 C -0.09 -0.91 5.67 -28.18 -0.16 -1.07 16 27 C -0.12 -1.37 5.01 -26.52 -0.13 -1.50 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.68 6.15 -51.93 -0.32 1.36 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.39 5.59 6.94 -40.82 -0.28 5.31 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.14 3.05 4.65 -51.93 -0.24 2.80 16 34 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.15 3.35 4.97 -52.49 -0.26 3.09 16 40 H 0.10 1.73 6.05 -51.93 -0.31 1.41 16 41 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.10 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 45 H 0.07 0.74 6.78 -51.93 -0.35 0.39 16 46 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -27.86 360.92 -10.51 -38.37 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -7.22 Total: 12.29 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -3.99 Total: -26.02 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.21 Total: -34.20 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.06 Total: -12.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.86 -10.51 -38.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458345719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.564 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds