Wall clock time and date at job start Fri Apr 10 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.80902 * 2 1 4 4 C 1.34780 * 120.00061 * 59.47252 * 3 2 1 5 5 O 1.21286 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00019 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47276 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47380 * 54.99537 * 7 6 4 9 9 C 1.50703 * 109.47169 * 294.99952 * 7 6 4 10 10 H 1.08001 * 120.00197 * 121.36340 * 9 7 6 11 11 C 1.37878 * 119.99937 * 301.36590 * 9 7 6 12 12 N 1.31515 * 119.99757 * 6.18019 * 11 9 7 13 13 Si 1.86801 * 119.99925 * 186.17498 * 11 9 7 14 14 H 1.48499 * 109.47001 * 60.00452 * 13 11 9 15 15 H 1.48505 * 109.46868 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47226 * 300.00135 * 13 11 9 17 17 C 1.50698 * 109.47295 * 175.00366 * 7 6 4 18 18 C 1.38235 * 119.99948 * 211.37105 * 17 7 6 19 19 C 1.38238 * 120.00133 * 179.78261 * 18 17 7 20 20 C 1.38231 * 119.99836 * 0.44262 * 19 18 17 21 21 C 1.38233 * 119.99895 * 359.81123 * 20 19 18 22 22 C 1.38228 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.53024 * 109.64045 * 120.52482 * 2 1 3 24 24 C 1.50063 * 110.14495 * 169.12474 * 23 2 1 25 25 C 1.29446 * 124.07833 * 342.86757 * 24 23 2 26 26 C 1.50063 * 124.07249 * 0.47373 * 25 24 23 27 27 C 1.53028 * 110.14882 * 342.86541 * 26 25 24 28 28 H 1.09000 * 109.47241 * 180.52240 * 1 2 3 29 29 H 1.09000 * 109.47598 * 300.52858 * 1 2 3 30 30 H 1.09005 * 109.47093 * 60.52976 * 1 2 3 31 31 H 0.96993 * 119.99682 * 239.46707 * 3 2 1 32 32 H 1.09003 * 109.47167 * 300.00062 * 6 4 3 33 33 H 1.09003 * 109.47301 * 59.99423 * 6 4 3 34 34 H 0.97007 * 119.99883 * 180.02562 * 12 11 9 35 35 H 1.08007 * 119.99918 * 359.97438 * 18 17 7 36 36 H 1.08001 * 119.99733 * 180.27352 * 19 18 17 37 37 H 1.08000 * 119.99727 * 179.83105 * 20 19 18 38 38 H 1.08003 * 119.99619 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.00447 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.35989 * 289.32905 * 23 2 1 41 41 H 1.08998 * 109.35765 * 49.05303 * 23 2 1 42 42 H 1.08002 * 117.96600 * 162.89235 * 24 23 2 43 43 H 1.07997 * 117.96345 * 180.44783 * 25 24 23 44 44 H 1.09008 * 109.35718 * 222.65970 * 26 25 24 45 45 H 1.08998 * 109.36236 * 103.07459 * 26 25 24 46 46 H 1.09004 * 109.64122 * 289.75562 * 27 26 25 47 47 H 1.09001 * 109.64316 * 169.12081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0265 1.3784 0.0000 4 6 1.6971 2.2133 1.0054 5 8 0.9892 1.8237 1.9100 6 6 2.2082 3.6309 1.0057 7 6 1.6911 4.3593 2.2478 8 1 1.9675 3.7974 3.1400 9 6 0.1905 4.4766 2.1731 10 1 -0.4239 4.0521 2.9532 11 6 -0.3980 5.1259 1.1086 12 7 0.3390 5.5358 0.0994 13 14 -2.2422 5.4233 1.0998 14 1 -2.6158 6.2501 2.2754 15 1 -2.6230 6.1342 -0.1472 16 1 -2.9538 4.1214 1.1639 17 6 2.2999 5.7363 2.3126 18 6 2.5435 6.3274 3.5382 19 6 3.1062 7.5887 3.5977 20 6 3.4167 8.2626 2.4315 21 6 3.1682 7.6737 1.2058 22 6 2.6097 6.4107 1.1464 23 6 2.0443 -0.7320 1.2415 24 6 3.5211 -0.9720 1.1252 25 6 4.1818 -0.9034 0.0141 26 6 3.5650 -0.5643 -1.3112 27 6 2.0456 -0.7338 -1.2443 28 1 -0.3634 -1.0276 0.0094 29 1 -0.3634 0.5220 0.8852 30 1 -0.3633 0.5056 -0.8947 31 1 2.5923 1.6900 -0.7235 32 1 3.2982 3.6242 1.0155 33 1 1.8562 4.1443 0.1109 34 1 -0.0750 5.9929 -0.6494 35 1 2.2972 5.8024 4.4494 36 1 3.3005 8.0486 4.5554 37 1 3.8537 9.2492 2.4780 38 1 3.4112 8.2002 0.2947 39 1 2.4160 5.9504 0.1888 40 1 1.8452 -0.1270 2.1261 41 1 1.5310 -1.6890 1.3352 42 1 4.0666 -1.2176 2.0243 43 1 5.2429 -1.1022 0.0429 44 1 3.9690 -1.2259 -2.0776 45 1 3.8025 0.4684 -1.5666 46 1 1.7979 -1.7930 -1.1741 47 1 1.5896 -0.3060 -2.1372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458345719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:06 Heat of formation + Delta-G solvation = -14.443855 kcal Electronic energy + Delta-G solvation = -26997.076494 eV Core-core repulsion = 23529.986493 eV Total energy + Delta-G solvation = -3467.090001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33762 -39.94984 -38.68809 -36.01519 -34.67245 -33.01740 -32.26500 -31.69226 -31.37484 -29.84426 -27.64137 -27.48294 -24.51113 -24.05353 -23.08442 -22.19567 -21.23354 -20.70795 -18.69439 -18.38839 -17.72836 -17.10748 -16.84462 -16.76221 -15.81423 -15.80175 -15.48846 -15.24241 -14.94207 -14.78660 -14.53437 -14.48072 -13.78979 -13.75761 -13.50940 -13.38546 -13.28492 -13.13503 -13.10458 -12.85587 -12.83214 -12.74140 -12.59792 -12.28489 -12.09112 -11.87932 -11.70818 -11.33341 -11.18259 -11.05021 -11.00857 -10.45376 -10.06945 -9.77663 -9.67571 -9.40400 -9.10714 -7.94108 -6.07186 0.87661 0.99170 1.38062 1.38548 1.45871 1.47746 2.21127 2.45868 2.59526 3.21801 3.36610 3.70655 3.83235 4.02857 4.27742 4.31896 4.36265 4.41199 4.48183 4.51402 4.56636 4.62644 4.72655 4.76714 4.80489 4.85491 4.89164 4.94716 4.96993 5.08155 5.09904 5.15450 5.20163 5.25812 5.32618 5.40694 5.46867 5.53768 5.67025 5.69438 5.82840 5.93246 5.94970 5.99314 6.11647 6.13133 6.40887 6.43776 6.58204 6.85895 6.99656 7.54489 7.80557 8.95693 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.004792 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.069272 B = 5841.482929 C = 6968.277414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 N -0.720 5.720 4 C 0.525 3.475 5 O -0.564 6.564 6 C -0.131 4.131 7 C 0.092 3.908 8 H 0.010 0.990 9 C -0.488 4.488 10 H 0.026 0.974 11 C 0.037 3.963 12 N -0.883 5.883 13 Si 0.928 3.072 14 H -0.284 1.284 15 H -0.276 1.276 16 H -0.289 1.289 17 C -0.055 4.055 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.163 4.163 25 C -0.153 4.153 26 C -0.090 4.090 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.403 0.597 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.262 0.738 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -7.959 -6.061 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.091 3.909 3 N -0.374 5.374 4 C 0.314 3.686 5 O -0.442 6.442 6 C -0.171 4.171 7 C 0.073 3.927 8 H 0.028 0.972 9 C -0.526 4.526 10 H 0.044 0.956 11 C -0.163 4.163 12 N -0.522 5.522 13 Si 0.756 3.244 14 H -0.210 1.210 15 H -0.201 1.201 16 H -0.215 1.215 17 C -0.056 4.056 18 C -0.170 4.170 19 C -0.158 4.158 20 C -0.166 4.166 21 C -0.166 4.166 22 C -0.107 4.107 23 C -0.139 4.139 24 C -0.181 4.181 25 C -0.171 4.171 26 C -0.127 4.127 27 C -0.151 4.151 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.465 -8.153 -5.596 13.017 hybrid contribution -1.285 0.404 0.265 1.373 sum 7.180 -7.749 -5.331 11.833 Atomic orbital electron populations 1.22148 0.95685 1.02222 1.01719 1.20302 0.92853 0.81532 0.96243 1.46063 1.53788 1.11494 1.26036 1.20930 0.79051 0.87703 0.80962 1.90528 1.38061 1.77590 1.37996 1.21807 0.98201 0.91744 1.05356 1.17485 0.93811 0.88688 0.92758 0.97150 1.20882 0.91516 1.33774 1.06404 0.95555 1.25182 0.99945 0.95679 0.95470 1.69623 1.34722 1.39997 1.07903 0.86100 0.83559 0.77503 0.77261 1.21014 1.20083 1.21516 1.20362 0.93588 0.98472 0.93129 1.21105 1.01902 0.96837 0.97189 1.21160 1.00992 0.94717 0.98979 1.21210 1.02581 1.00407 0.92394 1.21397 1.00938 0.96132 0.98126 1.21559 0.94889 0.94870 0.99390 1.20804 0.94265 1.00064 0.98774 1.22010 0.95612 1.02036 0.98420 1.22170 0.99942 1.00452 0.94576 1.20483 0.94078 1.02489 0.95602 1.21885 0.96224 1.01172 0.95852 0.90352 0.93954 0.93076 0.76132 0.91845 0.85693 0.92808 0.87958 0.84994 0.84578 0.85565 0.84434 0.92527 0.89772 0.88430 0.86713 0.88485 0.90527 0.89229 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 8.42 71.98 0.61 -4.49 16 2 C 0.18 5.04 0.67 3.74 0.00 5.04 16 3 N -0.72 -23.52 4.60 -422.28 -1.94 -25.46 16 4 C 0.52 22.52 6.97 87.65 0.61 23.13 16 5 O -0.56 -28.37 11.24 -3.05 -0.03 -28.40 16 6 C -0.13 -5.77 4.22 29.84 0.13 -5.65 16 7 C 0.09 4.62 1.98 -12.29 -0.02 4.59 16 8 H 0.01 0.54 7.89 -2.39 -0.02 0.52 16 9 C -0.49 -27.34 7.27 25.60 0.19 -27.15 16 10 H 0.03 1.59 7.82 -2.91 -0.02 1.57 16 11 C 0.04 1.95 5.14 84.65 0.44 2.39 16 12 N -0.88 -44.83 7.74 21.45 0.17 -44.66 16 13 Si 0.93 44.70 29.54 68.60 2.03 46.73 16 14 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 17 C -0.05 -2.57 4.68 -19.87 -0.09 -2.66 16 18 C -0.15 -6.56 9.70 22.27 0.22 -6.35 16 19 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 20 C -0.15 -5.10 10.05 22.27 0.22 -4.87 16 21 C -0.15 -5.55 10.05 22.27 0.22 -5.33 16 22 C -0.09 -3.87 7.56 22.27 0.17 -3.70 16 23 C -0.10 -2.99 4.82 29.66 0.14 -2.85 16 24 C -0.16 -4.11 9.68 27.03 0.26 -3.85 16 25 C -0.15 -3.17 9.74 27.03 0.26 -2.90 16 26 C -0.09 -1.55 5.67 29.66 0.17 -1.38 16 27 C -0.11 -2.24 5.01 30.73 0.15 -2.09 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.74 6.15 -2.39 -0.01 1.72 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.40 11.09 6.94 -92.71 -0.64 10.45 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.13 5.79 4.65 -2.39 -0.01 5.78 16 34 H 0.26 12.89 8.31 -92.70 -0.77 12.12 16 35 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.14 6.23 4.97 -2.91 -0.01 6.21 16 40 H 0.06 2.15 6.05 -2.39 -0.01 2.14 16 41 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 42 H 0.10 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.08 1.31 6.78 -2.39 -0.02 1.29 16 46 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.48 360.92 4.43 -59.05 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: 0.32 Total: 35.78 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 3.89 Total: -43.03 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -1.78 Total: -70.12 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.03 Total: -28.40 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.48 4.43 -59.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458345719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.603 kcal (2) G-P(sol) polarization free energy of solvation -63.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds