Wall clock time and date at job start Fri Apr 10 2020 22:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.64097 * 2 1 4 4 C 1.34775 * 119.99905 * 299.99512 * 3 2 1 5 5 O 1.21281 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00179 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47375 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47168 * 54.99809 * 7 6 4 9 9 C 1.50702 * 109.46951 * 294.99849 * 7 6 4 10 10 H 1.08005 * 119.99805 * 121.36725 * 9 7 6 11 11 C 1.37873 * 120.00100 * 301.36458 * 9 7 6 12 12 N 1.31519 * 120.00054 * 6.17612 * 11 9 7 13 13 Si 1.86800 * 120.00263 * 186.17078 * 11 9 7 14 14 H 1.48505 * 109.46805 * 90.00134 * 13 11 9 15 15 H 1.48497 * 109.47305 * 210.00195 * 13 11 9 16 16 H 1.48502 * 109.46926 * 330.00872 * 13 11 9 17 17 C 1.50700 * 109.47150 * 174.99934 * 7 6 4 18 18 C 1.38235 * 119.99867 * 211.36665 * 17 7 6 19 19 C 1.38232 * 120.00182 * 179.80972 * 18 17 7 20 20 C 1.38239 * 119.99892 * 0.41861 * 19 18 17 21 21 C 1.38238 * 119.99924 * 359.81717 * 20 19 18 22 22 C 1.38227 * 120.00139 * 31.64273 * 17 7 6 23 23 C 1.53025 * 109.64406 * 239.57407 * 2 1 3 24 24 C 1.50539 * 109.89125 * 190.83846 * 23 2 1 25 25 C 1.29441 * 124.15992 * 17.00783 * 24 23 2 26 26 C 1.50073 * 124.07841 * 359.58003 * 25 24 23 27 27 C 1.53023 * 110.14247 * 17.13407 * 26 25 24 28 28 H 1.09003 * 109.47254 * 59.99622 * 1 2 3 29 29 H 1.09000 * 109.47488 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47373 * 300.00329 * 1 2 3 31 31 H 0.97001 * 120.00123 * 120.00081 * 3 2 1 32 32 H 1.09000 * 109.47525 * 59.99746 * 6 4 3 33 33 H 1.09004 * 109.47104 * 300.00317 * 6 4 3 34 34 H 0.97000 * 120.00154 * 179.97438 * 12 11 9 35 35 H 1.08004 * 119.99817 * 0.02562 * 18 17 7 36 36 H 1.08001 * 120.00468 * 180.20961 * 19 18 17 37 37 H 1.07996 * 120.00152 * 179.78783 * 20 19 18 38 38 H 1.07993 * 120.00336 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99941 * 359.97438 * 22 17 7 40 40 H 1.08999 * 109.35424 * 310.87882 * 23 2 1 41 41 H 1.08994 * 109.35233 * 70.46213 * 23 2 1 42 42 H 1.08001 * 117.87785 * 197.03515 * 24 23 2 43 43 H 1.08004 * 117.96714 * 179.60863 * 25 24 23 44 44 H 1.08998 * 109.36206 * 256.93230 * 26 25 24 45 45 H 1.08996 * 109.24830 * 137.26613 * 26 25 24 46 46 H 1.09000 * 109.64163 * 190.87554 * 27 26 25 47 47 H 1.09003 * 109.81512 * 70.35033 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6993 2.2106 -1.0109 5 8 1.0006 1.8160 -1.9203 6 6 2.2063 3.6297 -1.0112 7 6 1.6979 4.3526 -2.2601 8 1 0.6114 4.2793 -2.3054 9 6 2.2960 3.7153 -3.4878 10 1 1.6519 3.3000 -4.2489 11 6 3.6653 3.6625 -3.6395 12 7 4.4511 4.0569 -2.6613 13 14 4.4048 3.0306 -5.2344 14 1 4.5934 4.1637 -6.1755 15 1 5.7177 2.3961 -4.9540 16 1 3.4907 2.0300 -5.8414 17 6 2.1014 5.8034 -2.2000 18 6 1.2976 6.7688 -2.7769 19 6 1.6656 8.0999 -2.7183 20 6 2.8419 8.4648 -2.0905 21 6 3.6482 7.4989 -1.5178 22 6 3.2781 6.1681 -1.5731 23 6 2.0444 -0.7299 -1.2427 24 6 3.5260 -0.9670 -1.1208 25 6 4.1844 -0.8957 -0.0087 26 6 3.5643 -0.5574 1.3155 27 6 2.0456 -0.7314 1.2459 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.5810 1.6954 0.7275 32 1 3.2963 3.6262 -1.0114 33 1 1.8449 4.1449 -0.1212 34 1 5.4145 4.0193 -2.7679 35 1 0.3802 6.4833 -3.2703 36 1 1.0360 8.8546 -3.1660 37 1 3.1312 9.5044 -2.0477 38 1 4.5673 7.7838 -1.0277 39 1 3.9081 5.4134 -1.1259 40 1 1.5320 -1.6872 -1.3374 41 1 1.8419 -0.1250 -2.1265 42 1 4.0738 -1.2117 -2.0189 43 1 5.2462 -1.0913 -0.0352 44 1 3.7982 0.4761 1.5705 45 1 3.9690 -1.2191 2.0812 46 1 1.5867 -0.3045 2.1376 47 1 1.7977 -1.7907 1.1777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458345728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:11 Heat of formation + Delta-G solvation = -1.530128 kcal Electronic energy + Delta-G solvation = -27138.667065 eV Core-core repulsion = 23672.137045 eV Total energy + Delta-G solvation = -3466.530020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97406 -38.35511 -37.22181 -34.25152 -33.32650 -31.25124 -30.78799 -30.61961 -29.77726 -28.21035 -26.34488 -25.73909 -23.08115 -22.70386 -21.50772 -20.78942 -19.76826 -19.10663 -17.45566 -16.71032 -15.94870 -15.79689 -15.44639 -14.92900 -14.50501 -14.18675 -13.93408 -13.82733 -13.65759 -13.45501 -12.92547 -12.88861 -12.50087 -12.29782 -12.18887 -12.04569 -11.85434 -11.68485 -11.55081 -11.48316 -11.25145 -11.17064 -10.89995 -10.73567 -10.34717 -10.20901 -10.16820 -10.05041 -9.92554 -9.26701 -9.14487 -8.75771 -8.50795 -8.30956 -8.24108 -7.78933 -7.42200 -5.96343 -4.03604 2.49866 2.58754 2.59889 3.31927 3.38279 3.43985 3.82289 3.97000 4.45447 4.79100 4.87325 4.98421 5.06980 5.27841 5.35689 5.52860 5.54455 5.56232 5.81635 5.83568 5.85286 5.89461 5.94314 5.99958 6.01346 6.09145 6.14315 6.23083 6.38875 6.43353 6.48752 6.56749 6.61320 6.67089 6.76799 6.79999 6.92312 7.16162 7.22253 7.25386 7.29625 7.31392 7.52192 7.57550 7.73170 7.99364 8.12381 8.21171 8.37652 8.44026 8.93527 9.36239 9.59577 10.98256 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.004857 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.563833 B = 5764.006716 C = 6496.210087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 N -0.736 5.736 4 C 0.530 3.470 5 O -0.527 6.527 6 C -0.141 4.141 7 C 0.090 3.910 8 H 0.035 0.965 9 C -0.467 4.467 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.889 5.889 13 Si 0.889 3.111 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.275 1.275 17 C -0.031 4.031 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.172 4.172 26 C -0.085 4.085 27 C -0.120 4.120 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.391 0.609 32 H 0.135 0.865 33 H 0.047 0.953 34 H 0.260 0.740 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.149 0.851 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 -5.270 9.566 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 N -0.390 5.390 4 C 0.319 3.681 5 O -0.403 6.403 6 C -0.181 4.181 7 C 0.070 3.930 8 H 0.054 0.946 9 C -0.505 4.505 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.717 3.283 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.200 1.200 17 C -0.032 4.032 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.190 4.190 26 C -0.122 4.122 27 C -0.158 4.158 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.225 0.775 32 H 0.153 0.847 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.166 0.834 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.066 -5.561 8.897 10.694 hybrid contribution 1.138 -0.084 -0.784 1.384 sum -0.928 -5.645 8.114 9.928 Atomic orbital electron populations 1.22195 0.94792 1.01472 1.03463 1.20119 0.93379 0.82583 0.94457 1.46261 1.55264 1.11059 1.26455 1.21002 0.78748 0.88215 0.80158 1.90525 1.37464 1.77351 1.34934 1.21999 1.06965 0.90296 0.98852 1.17613 0.95169 0.87003 0.93171 0.94626 1.20985 0.91134 1.34022 1.04309 0.92251 1.24837 0.97117 0.95376 0.96430 1.69537 1.03825 1.48706 1.30803 0.86620 0.78360 0.78933 0.84362 1.20897 1.21473 1.19998 1.20391 0.93677 0.96269 0.92814 1.20926 1.00207 0.92670 1.01194 1.20800 0.97433 0.95902 1.01982 1.20779 0.96330 0.98051 1.02054 1.21087 0.99143 0.94228 1.01831 1.21630 0.95453 0.94685 0.97639 1.21038 0.92603 1.00203 1.00582 1.22113 0.96469 0.98955 0.97348 1.21828 0.99129 1.03476 0.94545 1.20357 0.94721 1.01431 0.95726 1.21890 0.95703 1.00821 0.97405 0.89919 0.92756 0.93061 0.77530 0.84724 0.93480 0.92979 0.87671 0.88111 0.88330 0.88107 0.83401 0.91094 0.87917 0.88548 0.88541 0.91030 0.91464 0.91417 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.41 37.16 0.31 -1.97 16 2 C 0.18 2.61 0.67 -131.60 -0.09 2.52 16 3 N -0.74 -11.94 4.59 -47.41 -0.22 -12.16 16 4 C 0.53 10.84 6.97 -10.99 -0.08 10.77 16 5 O -0.53 -12.32 11.22 5.56 0.06 -12.26 16 6 C -0.14 -3.00 4.22 -27.89 -0.12 -3.12 16 7 C 0.09 2.14 1.98 -92.92 -0.18 1.95 16 8 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 9 C -0.47 -12.41 7.27 -34.44 -0.25 -12.66 16 10 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 11 C 0.06 1.61 5.14 -17.82 -0.09 1.52 16 12 N -0.89 -22.46 7.74 55.43 0.43 -22.03 16 13 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.03 -0.71 4.68 -104.63 -0.49 -1.20 16 18 C -0.13 -2.82 9.70 -39.58 -0.38 -3.20 16 19 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 20 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 21 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 22 C -0.08 -1.67 7.56 -39.58 -0.30 -1.97 16 23 C -0.11 -1.70 4.86 -27.95 -0.14 -1.83 16 24 C -0.13 -2.01 9.69 -35.67 -0.35 -2.36 16 25 C -0.17 -2.34 9.74 -35.90 -0.35 -2.69 16 26 C -0.09 -0.97 5.67 -28.17 -0.16 -1.13 16 27 C -0.12 -1.36 5.01 -26.51 -0.13 -1.49 16 28 H 0.08 1.43 6.18 -51.93 -0.32 1.11 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.39 5.58 6.95 -40.82 -0.28 5.30 16 32 H 0.14 3.06 4.65 -51.93 -0.24 2.82 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.11 2.13 8.06 -52.48 -0.42 1.70 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.15 3.36 4.97 -52.48 -0.26 3.09 16 40 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 41 H 0.10 2.04 5.99 -51.93 -0.31 1.73 16 42 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.10 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.07 0.81 6.78 -51.93 -0.35 0.45 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -27.95 360.94 -10.51 -38.46 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.22 Total: 12.65 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -3.98 Total: -26.59 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.21 Total: -34.19 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.06 Total: -12.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.95 -10.51 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458345728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.930 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds