Wall clock time and date at job start Fri Apr 10 2020 22:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.64097 * 2 1 4 4 C 1.34775 * 119.99905 * 299.99512 * 3 2 1 5 5 O 1.21281 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00179 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47375 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47168 * 54.99809 * 7 6 4 9 9 C 1.50702 * 109.46951 * 294.99849 * 7 6 4 10 10 H 1.08005 * 119.99805 * 121.36725 * 9 7 6 11 11 C 1.37873 * 120.00100 * 301.36458 * 9 7 6 12 12 N 1.31519 * 120.00054 * 6.17612 * 11 9 7 13 13 Si 1.86800 * 120.00263 * 186.17078 * 11 9 7 14 14 H 1.48505 * 109.46805 * 90.00134 * 13 11 9 15 15 H 1.48497 * 109.47305 * 210.00195 * 13 11 9 16 16 H 1.48502 * 109.46926 * 330.00872 * 13 11 9 17 17 C 1.50700 * 109.47150 * 174.99934 * 7 6 4 18 18 C 1.38235 * 119.99867 * 211.36665 * 17 7 6 19 19 C 1.38232 * 120.00182 * 179.80972 * 18 17 7 20 20 C 1.38239 * 119.99892 * 0.41861 * 19 18 17 21 21 C 1.38238 * 119.99924 * 359.81717 * 20 19 18 22 22 C 1.38227 * 120.00139 * 31.64273 * 17 7 6 23 23 C 1.53025 * 109.64406 * 239.57407 * 2 1 3 24 24 C 1.50539 * 109.89125 * 190.83846 * 23 2 1 25 25 C 1.29441 * 124.15992 * 17.00783 * 24 23 2 26 26 C 1.50073 * 124.07841 * 359.58003 * 25 24 23 27 27 C 1.53023 * 110.14247 * 17.13407 * 26 25 24 28 28 H 1.09003 * 109.47254 * 59.99622 * 1 2 3 29 29 H 1.09000 * 109.47488 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47373 * 300.00329 * 1 2 3 31 31 H 0.97001 * 120.00123 * 120.00081 * 3 2 1 32 32 H 1.09000 * 109.47525 * 59.99746 * 6 4 3 33 33 H 1.09004 * 109.47104 * 300.00317 * 6 4 3 34 34 H 0.97000 * 120.00154 * 179.97438 * 12 11 9 35 35 H 1.08004 * 119.99817 * 0.02562 * 18 17 7 36 36 H 1.08001 * 120.00468 * 180.20961 * 19 18 17 37 37 H 1.07996 * 120.00152 * 179.78783 * 20 19 18 38 38 H 1.07993 * 120.00336 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99941 * 359.97438 * 22 17 7 40 40 H 1.08999 * 109.35424 * 310.87882 * 23 2 1 41 41 H 1.08994 * 109.35233 * 70.46213 * 23 2 1 42 42 H 1.08001 * 117.87785 * 197.03515 * 24 23 2 43 43 H 1.08004 * 117.96714 * 179.60863 * 25 24 23 44 44 H 1.08998 * 109.36206 * 256.93230 * 26 25 24 45 45 H 1.08996 * 109.24830 * 137.26613 * 26 25 24 46 46 H 1.09000 * 109.64163 * 190.87554 * 27 26 25 47 47 H 1.09003 * 109.81512 * 70.35033 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6993 2.2106 -1.0109 5 8 1.0006 1.8160 -1.9203 6 6 2.2063 3.6297 -1.0112 7 6 1.6979 4.3526 -2.2601 8 1 0.6114 4.2793 -2.3054 9 6 2.2960 3.7153 -3.4878 10 1 1.6519 3.3000 -4.2489 11 6 3.6653 3.6625 -3.6395 12 7 4.4511 4.0569 -2.6613 13 14 4.4048 3.0306 -5.2344 14 1 4.5934 4.1637 -6.1755 15 1 5.7177 2.3961 -4.9540 16 1 3.4907 2.0300 -5.8414 17 6 2.1014 5.8034 -2.2000 18 6 1.2976 6.7688 -2.7769 19 6 1.6656 8.0999 -2.7183 20 6 2.8419 8.4648 -2.0905 21 6 3.6482 7.4989 -1.5178 22 6 3.2781 6.1681 -1.5731 23 6 2.0444 -0.7299 -1.2427 24 6 3.5260 -0.9670 -1.1208 25 6 4.1844 -0.8957 -0.0087 26 6 3.5643 -0.5574 1.3155 27 6 2.0456 -0.7314 1.2459 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.5810 1.6954 0.7275 32 1 3.2963 3.6262 -1.0114 33 1 1.8449 4.1449 -0.1212 34 1 5.4145 4.0193 -2.7679 35 1 0.3802 6.4833 -3.2703 36 1 1.0360 8.8546 -3.1660 37 1 3.1312 9.5044 -2.0477 38 1 4.5673 7.7838 -1.0277 39 1 3.9081 5.4134 -1.1259 40 1 1.5320 -1.6872 -1.3374 41 1 1.8419 -0.1250 -2.1265 42 1 4.0738 -1.2117 -2.0189 43 1 5.2462 -1.0913 -0.0352 44 1 3.7982 0.4761 1.5705 45 1 3.9690 -1.2191 2.0812 46 1 1.5867 -0.3045 2.1376 47 1 1.7977 -1.7907 1.1777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458345728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:11 Heat of formation + Delta-G solvation = -14.356163 kcal Electronic energy + Delta-G solvation = -27139.223244 eV Core-core repulsion = 23672.137045 eV Total energy + Delta-G solvation = -3467.086198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32381 -39.94355 -38.67496 -36.01741 -34.67473 -33.01390 -32.25481 -31.67244 -31.37161 -29.83820 -27.65201 -27.45286 -24.51192 -24.06163 -23.08221 -22.18494 -21.22537 -20.70086 -18.71461 -18.38643 -17.72071 -17.12166 -16.86325 -16.75851 -15.90900 -15.68032 -15.47931 -15.32100 -14.88035 -14.77591 -14.55319 -14.46083 -13.78655 -13.77334 -13.49848 -13.37382 -13.26505 -13.13976 -13.12282 -12.87360 -12.82175 -12.70501 -12.62684 -12.26977 -12.08274 -11.88049 -11.71138 -11.33643 -11.18067 -11.04648 -11.00690 -10.45817 -10.06222 -9.79393 -9.66428 -9.40129 -9.10548 -7.94925 -6.07539 0.87898 0.99395 1.33531 1.36368 1.44779 1.45631 2.21595 2.44341 2.61318 3.21255 3.36764 3.71129 3.82107 4.04340 4.27691 4.32023 4.37276 4.41455 4.46990 4.50929 4.56854 4.63450 4.73323 4.76195 4.83133 4.87066 4.92133 4.95530 4.96441 5.07197 5.10221 5.15987 5.22078 5.26885 5.32232 5.40674 5.47481 5.54099 5.67377 5.69690 5.79484 5.93521 5.95773 6.00134 6.11819 6.12201 6.40956 6.43917 6.58316 6.85737 7.00848 7.54180 7.81733 8.94649 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.004857 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.563833 B = 5764.006716 C = 6496.210087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.176 3.824 3 N -0.720 5.720 4 C 0.525 3.475 5 O -0.564 6.564 6 C -0.132 4.132 7 C 0.092 3.908 8 H 0.012 0.988 9 C -0.486 4.486 10 H 0.025 0.975 11 C 0.038 3.962 12 N -0.881 5.881 13 Si 0.924 3.076 14 H -0.282 1.282 15 H -0.279 1.279 16 H -0.290 1.290 17 C -0.055 4.055 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.089 4.089 23 C -0.103 4.103 24 C -0.165 4.165 25 C -0.154 4.154 26 C -0.088 4.088 27 C -0.111 4.111 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.403 0.597 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.260 0.740 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -4.547 12.144 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.090 3.910 3 N -0.374 5.374 4 C 0.313 3.687 5 O -0.442 6.442 6 C -0.172 4.172 7 C 0.072 3.928 8 H 0.030 0.970 9 C -0.524 4.524 10 H 0.044 0.956 11 C -0.161 4.161 12 N -0.520 5.520 13 Si 0.753 3.247 14 H -0.208 1.208 15 H -0.205 1.205 16 H -0.216 1.216 17 C -0.055 4.055 18 C -0.170 4.170 19 C -0.159 4.159 20 C -0.166 4.166 21 C -0.166 4.166 22 C -0.107 4.107 23 C -0.140 4.140 24 C -0.183 4.183 25 C -0.172 4.172 26 C -0.124 4.124 27 C -0.149 4.149 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.239 0.761 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.879 -4.840 11.518 12.525 hybrid contribution 0.766 -0.278 -1.580 1.778 sum -0.112 -5.118 9.938 11.179 Atomic orbital electron populations 1.22133 0.94602 1.02610 1.02125 1.20340 0.93605 0.81399 0.95651 1.46069 1.54436 1.11502 1.25378 1.20924 0.78618 0.88478 0.80643 1.90528 1.39189 1.77899 1.36571 1.21813 1.05950 0.91056 0.98381 1.17490 0.93564 0.88398 0.93298 0.96976 1.20908 0.91299 1.35308 1.04902 0.95624 1.25145 0.97180 0.95748 0.98038 1.69629 1.03645 1.48169 1.30602 0.86088 0.77835 0.78186 0.82638 1.20825 1.20466 1.21551 1.20359 0.94876 0.95732 0.94568 1.21106 1.00386 0.93833 1.01647 1.21162 0.98011 0.95433 1.01250 1.21211 0.95414 0.99708 1.00280 1.21396 1.00191 0.93443 1.01594 1.21561 0.95130 0.95767 0.98255 1.20912 0.93536 1.00183 0.99414 1.22067 0.96260 1.02099 0.97889 1.22156 0.99555 1.00484 0.95050 1.20480 0.94648 1.02442 0.94869 1.21880 0.95626 1.01321 0.96027 0.93804 0.90412 0.91729 0.76119 0.85829 0.91585 0.92941 0.87876 0.84983 0.84612 0.85619 0.84464 0.89718 0.92885 0.90033 0.87602 0.90489 0.88374 0.89049 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.41 71.98 0.61 -3.75 16 2 C 0.18 4.93 0.67 3.74 0.00 4.93 16 3 N -0.72 -23.20 4.59 -422.29 -1.94 -25.14 16 4 C 0.52 22.35 6.97 87.66 0.61 22.96 16 5 O -0.56 -28.24 11.22 -3.03 -0.03 -28.27 16 6 C -0.13 -5.78 4.22 29.85 0.13 -5.65 16 7 C 0.09 4.59 1.98 -12.29 -0.02 4.57 16 8 H 0.01 0.63 7.89 -2.39 -0.02 0.61 16 9 C -0.49 -27.32 7.27 25.60 0.19 -27.14 16 10 H 0.03 1.56 7.82 -2.91 -0.02 1.54 16 11 C 0.04 2.06 5.14 84.65 0.44 2.49 16 12 N -0.88 -45.01 7.74 21.45 0.17 -44.84 16 13 Si 0.92 45.19 29.54 68.60 2.03 47.22 16 14 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 17 C -0.05 -2.55 4.68 -19.87 -0.09 -2.64 16 18 C -0.15 -6.50 9.70 22.27 0.22 -6.28 16 19 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 20 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 21 C -0.15 -5.56 10.05 22.27 0.22 -5.34 16 22 C -0.09 -3.87 7.56 22.27 0.17 -3.70 16 23 C -0.10 -3.36 4.86 29.81 0.14 -3.22 16 24 C -0.16 -5.13 9.69 27.19 0.26 -4.87 16 25 C -0.15 -3.92 9.74 27.04 0.26 -3.66 16 26 C -0.09 -1.67 5.67 29.66 0.17 -1.50 16 27 C -0.11 -2.11 5.01 30.74 0.15 -1.96 16 28 H 0.04 1.58 6.18 -2.39 -0.01 1.56 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 31 H 0.40 10.90 6.95 -92.71 -0.64 10.26 16 32 H 0.12 5.74 4.65 -2.39 -0.01 5.73 16 33 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 35 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.14 6.22 4.97 -2.91 -0.01 6.20 16 40 H 0.08 2.42 8.11 -2.39 -0.02 2.40 16 41 H 0.05 2.28 5.99 -2.39 -0.01 2.27 16 42 H 0.08 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.08 1.45 6.78 -2.39 -0.02 1.43 16 45 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 1.50 8.13 -2.39 -0.02 1.48 16 Total: -1.00 -64.28 360.94 4.44 -59.84 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.32 Total: 35.71 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 3.90 Total: -44.52 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -1.77 Total: -69.98 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.03 Total: -28.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.28 4.44 -59.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458345728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.486 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds