Wall clock time and date at job start Fri Apr 10 2020 22:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38138 * 119.89317 * 2 1 4 4 C 1.38218 * 119.93347 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.93325 * 359.97438 * 4 3 2 6 6 C 1.38449 * 120.21592 * 0.02562 * 5 4 3 7 7 C 1.38263 * 119.85263 * 359.97438 * 6 5 4 8 8 C 1.51365 * 109.75237 * 179.97438 * 7 6 5 9 9 H 1.09007 * 110.30236 * 101.73098 * 8 7 6 10 10 C 1.52998 * 110.38440 * 223.84010 * 8 7 6 11 11 C 1.54342 * 105.17317 * 342.81123 * 8 7 6 12 12 C 1.51367 * 130.39701 * 179.97438 * 6 5 4 13 13 H 1.09004 * 110.38122 * 78.26023 * 12 6 5 14 14 C 1.53001 * 110.30411 * 316.15518 * 12 6 5 15 15 C 1.50691 * 109.47213 * 180.12033 * 14 12 6 16 16 O 1.21289 * 120.00227 * 359.16342 * 15 14 12 17 17 N 1.34779 * 119.99906 * 179.15696 * 15 14 12 18 18 C 1.37107 * 120.00262 * 179.72398 * 17 15 14 19 19 H 1.07991 * 119.99993 * 216.14839 * 18 17 15 20 20 C 1.38955 * 119.99491 * 36.14507 * 18 17 15 21 21 N 1.31409 * 119.99655 * 23.97513 * 20 18 17 22 22 Si 1.86791 * 119.99758 * 203.97707 * 20 18 17 23 23 H 1.48497 * 109.47383 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47324 * 120.00426 * 22 20 18 25 25 H 1.48510 * 109.46975 * 240.00167 * 22 20 18 26 26 C 1.46498 * 119.99956 * 0.02562 * 17 15 14 27 27 C 1.53002 * 117.49758 * 184.05334 * 26 17 15 28 28 C 1.53002 * 60.00101 * 252.50552 * 27 26 17 29 29 H 1.08998 * 109.46913 * 262.36043 * 1 2 3 30 30 H 1.09003 * 109.46851 * 22.36376 * 1 2 3 31 31 H 1.08995 * 109.47226 * 142.36078 * 1 2 3 32 32 H 1.08004 * 120.03625 * 359.95876 * 3 2 1 33 33 H 1.08002 * 120.02726 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.88749 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46554 * 158.91125 * 10 8 7 36 36 H 1.08995 * 109.47086 * 278.90657 * 10 8 7 37 37 H 1.09000 * 109.47212 * 38.91041 * 10 8 7 38 38 H 1.09010 * 110.81927 * 268.12936 * 11 8 7 39 39 H 1.08992 * 110.82485 * 144.58190 * 11 8 7 40 40 H 1.09006 * 109.46834 * 60.11889 * 14 12 6 41 41 H 1.08996 * 109.47142 * 300.12800 * 14 12 6 42 42 H 0.97005 * 119.99553 * 174.93993 * 21 20 18 43 43 H 1.08995 * 115.55023 * 329.75618 * 26 17 15 44 44 H 1.09001 * 117.50087 * 359.97438 * 27 26 17 45 45 H 1.09003 * 117.49972 * 145.01688 * 27 26 17 46 46 H 1.08996 * 117.49758 * 252.51131 * 28 27 26 47 47 H 1.08998 * 117.49514 * 107.48735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.1976 0.0000 4 6 3.5777 1.1986 0.0005 5 6 4.2679 0.0019 0.0016 6 6 3.5796 -1.1994 0.0016 7 6 2.1970 -1.2004 0.0011 8 6 1.6865 -2.6254 0.0006 9 1 1.3628 -2.9116 1.0014 10 6 0.5333 -2.7780 -0.9933 11 6 2.8901 -3.4855 -0.4394 12 6 4.0922 -2.6237 0.0021 13 1 4.4159 -2.9102 1.0027 14 6 5.2461 -2.7730 -0.9914 15 6 5.7395 -4.1968 -0.9779 16 8 5.2295 -5.0084 -0.2347 17 7 6.7475 -4.5684 -1.7918 18 6 7.2002 -5.8625 -1.7755 19 1 8.2519 -6.0683 -1.9092 20 6 6.3058 -6.9090 -1.5868 21 7 5.0365 -6.7507 -1.8876 22 14 6.9080 -8.5408 -0.9056 23 1 8.3687 -8.4619 -0.6505 24 1 6.1985 -8.8392 0.3644 25 1 6.6355 -9.6189 -1.8900 26 6 7.3637 -3.5881 -2.6891 27 6 8.4377 -4.0920 -3.6554 28 6 8.8336 -3.2372 -2.4498 29 1 -0.3633 -0.1366 1.0185 30 1 -0.3633 0.9504 -0.3910 31 1 -0.3633 -0.8137 -0.6275 32 1 1.6544 2.1323 -0.0007 33 1 4.1175 2.1340 0.0001 34 1 5.3479 0.0035 0.0016 35 1 0.4243 -3.8280 -1.2648 36 1 -0.3901 -2.4233 -0.5356 37 1 0.7443 -2.1914 -1.8875 38 1 2.8907 -3.6272 -1.5202 39 1 2.8906 -4.4448 0.0781 40 1 6.0587 -2.1041 -0.7076 41 1 4.8987 -2.5182 -1.9926 42 1 4.4261 -7.5021 -1.8257 43 1 6.7065 -2.7915 -3.0377 44 1 8.6860 -5.1529 -3.6231 45 1 8.4871 -3.6270 -4.6400 46 1 9.1434 -2.2098 -2.6413 47 1 9.3421 -3.7357 -1.6246 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489897952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:14 Heat of formation + Delta-G solvation = 23.257226 kcal Electronic energy + Delta-G solvation = -26752.511222 eV Core-core repulsion = 23287.056062 eV Total energy + Delta-G solvation = -3465.455160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35364 -38.49292 -36.41567 -35.55108 -33.76839 -32.66583 -31.09390 -30.45749 -29.25519 -27.57392 -26.35029 -24.71097 -23.15765 -21.71534 -21.69652 -21.11004 -20.29356 -19.66618 -18.60215 -16.60565 -16.03561 -15.88684 -15.22198 -14.85380 -14.63709 -14.49470 -14.21340 -13.95856 -13.76793 -13.59253 -13.00140 -12.90948 -12.76775 -12.45996 -12.24623 -12.02421 -11.81646 -11.69618 -11.53878 -11.25119 -11.08206 -10.92836 -10.87461 -10.83000 -10.54039 -10.49796 -10.34130 -10.17114 -10.07794 -9.95086 -9.90511 -9.72475 -8.74021 -8.39079 -8.28887 -7.80956 -6.94726 -6.05713 -3.71990 1.54669 1.57576 3.33120 3.43321 3.44839 3.90907 4.22139 4.31533 4.69482 4.78383 4.81070 4.94355 5.01685 5.11392 5.26483 5.32452 5.37338 5.39218 5.54393 5.58064 5.59885 5.62260 5.71165 5.73180 5.78449 5.81677 5.85099 5.94664 5.99267 6.10861 6.14916 6.21604 6.23038 6.26321 6.33427 6.38652 6.50137 6.53712 6.56778 6.66874 6.71770 6.77679 6.89700 6.93114 6.98138 6.99828 7.21610 7.66503 8.28625 9.11312 9.25450 9.76588 10.40688 11.02704 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.004274 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.490295 B = 6549.125446 C = 7773.442743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.088 4.088 8 C -0.058 4.058 9 H 0.079 0.921 10 C -0.145 4.145 11 C -0.091 4.091 12 C -0.029 4.029 13 H 0.088 0.912 14 C -0.120 4.120 15 C 0.471 3.529 16 O -0.525 6.525 17 N -0.428 5.428 18 C -0.354 4.354 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.817 5.817 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.288 1.288 26 C 0.077 3.923 27 C -0.177 4.177 28 C -0.208 4.208 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.261 0.739 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 13.715 0.843 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.149 4.149 4 C -0.139 4.139 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.088 4.088 8 C -0.076 4.076 9 H 0.098 0.902 10 C -0.202 4.202 11 C -0.129 4.129 12 C -0.047 4.047 13 H 0.106 0.894 14 C -0.161 4.161 15 C 0.259 3.741 16 O -0.403 6.403 17 N -0.149 5.149 18 C -0.480 4.480 19 H 0.096 0.904 20 C -0.136 4.136 21 N -0.451 5.451 22 Si 0.734 3.266 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.215 1.215 26 C -0.029 4.029 27 C -0.215 4.215 28 C -0.247 4.247 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.018 13.203 1.292 14.568 hybrid contribution 0.449 -0.563 0.125 0.731 sum -5.569 12.641 1.417 13.886 Atomic orbital electron populations 1.21073 0.91906 1.02910 1.02382 1.19380 0.95625 0.91924 1.00611 1.20839 0.94250 0.96849 1.02962 1.20945 0.94204 0.97499 1.01290 1.20633 0.99770 0.91314 1.01473 1.20814 0.94153 0.95162 0.97529 1.20506 0.94084 0.94351 0.99884 1.20780 0.96578 0.90687 0.99544 0.90242 1.21940 0.97305 1.02011 0.98941 1.22333 0.90494 0.98157 1.01871 1.20404 0.95452 0.88866 1.00021 0.89434 1.21623 0.97527 0.97516 0.99456 1.19621 0.83360 0.88231 0.82917 1.90513 1.56256 1.52801 1.40682 1.42873 1.32563 1.07345 1.32109 1.18901 0.92928 0.80878 1.55304 0.90391 1.25016 0.94704 0.98296 0.95576 1.69902 1.03838 1.31046 1.40297 0.86256 0.78856 0.82409 0.79117 1.19798 1.20755 1.21457 1.21637 0.88812 0.95664 0.96811 1.23083 1.04071 1.01083 0.93227 1.23310 1.00956 0.99474 1.00942 0.91662 0.92254 0.90168 0.86533 0.86370 0.86413 0.92082 0.92519 0.92576 0.91075 0.89309 0.91136 0.91090 0.92882 0.87997 0.87575 0.89849 0.89856 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.64 36.01 0.35 -0.97 16 2 C -0.08 -0.99 5.86 -104.58 -0.61 -1.60 16 3 C -0.13 -1.60 9.67 -39.63 -0.38 -1.98 16 4 C -0.12 -1.51 10.05 -39.62 -0.40 -1.90 16 5 C -0.11 -1.61 9.74 -39.54 -0.39 -1.99 16 6 C -0.08 -1.22 5.60 -104.21 -0.58 -1.80 16 7 C -0.09 -1.32 5.45 -104.21 -0.57 -1.89 16 8 C -0.06 -0.86 3.34 -90.74 -0.30 -1.17 16 9 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 10 C -0.15 -1.88 7.77 37.16 0.29 -1.59 16 11 C -0.09 -1.68 4.98 -25.32 -0.13 -1.80 16 12 C -0.03 -0.52 2.52 -90.73 -0.23 -0.75 16 13 H 0.09 1.70 8.06 -51.93 -0.42 1.28 16 14 C -0.12 -2.32 3.59 -27.89 -0.10 -2.42 16 15 C 0.47 11.60 6.78 -10.99 -0.07 11.53 16 16 O -0.53 -14.72 11.80 5.55 0.07 -14.65 16 17 N -0.43 -10.59 2.89 -107.73 -0.31 -10.90 16 18 C -0.35 -9.59 8.26 -14.93 -0.12 -9.71 16 19 H 0.08 2.06 6.92 -52.49 -0.36 1.70 16 20 C 0.08 2.10 4.21 -17.47 -0.07 2.03 16 21 N -0.82 -23.75 11.39 55.50 0.63 -23.11 16 22 Si 0.91 21.94 29.62 -169.99 -5.03 16.91 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.08 1.54 5.91 -67.93 -0.40 1.14 16 27 C -0.18 -3.19 9.77 -26.73 -0.26 -3.45 16 28 C -0.21 -3.56 10.34 -26.73 -0.28 -3.84 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.52 8.02 -51.93 -0.42 0.11 16 31 H 0.08 0.82 4.40 -51.93 -0.23 0.59 16 32 H 0.12 1.14 8.05 -52.48 -0.42 0.72 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.52 7.82 -52.48 -0.41 1.11 16 35 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 36 H 0.06 0.61 6.21 -51.93 -0.32 0.29 16 37 H 0.06 0.74 7.93 -51.93 -0.41 0.32 16 38 H 0.07 1.42 7.66 -51.92 -0.40 1.02 16 39 H 0.09 1.85 7.46 -51.93 -0.39 1.47 16 40 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 41 H 0.07 1.34 7.49 -51.93 -0.39 0.95 16 42 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 43 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 44 H 0.11 2.12 6.56 -51.93 -0.34 1.78 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -31.20 366.95 -10.75 -41.95 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.36 Total: 6.46 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -4.26 Total: -22.18 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.32 Total: -34.01 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.07 Total: -14.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.20 -10.75 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489897952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.207 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds