Wall clock time and date at job start Fri Apr 10 2020 22:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38138 * 119.89317 * 2 1 4 4 C 1.38218 * 119.93347 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.93325 * 359.97438 * 4 3 2 6 6 C 1.38449 * 120.21592 * 0.02562 * 5 4 3 7 7 C 1.38263 * 119.85263 * 359.97438 * 6 5 4 8 8 C 1.51365 * 109.75237 * 179.97438 * 7 6 5 9 9 H 1.09007 * 110.30236 * 101.73098 * 8 7 6 10 10 C 1.52998 * 110.38440 * 223.84010 * 8 7 6 11 11 C 1.54342 * 105.17317 * 342.81123 * 8 7 6 12 12 C 1.51367 * 130.39701 * 179.97438 * 6 5 4 13 13 H 1.09004 * 110.38122 * 78.26023 * 12 6 5 14 14 C 1.53001 * 110.30411 * 316.15518 * 12 6 5 15 15 C 1.50691 * 109.47213 * 180.12033 * 14 12 6 16 16 O 1.21289 * 120.00227 * 359.16342 * 15 14 12 17 17 N 1.34779 * 119.99906 * 179.15696 * 15 14 12 18 18 C 1.37107 * 120.00262 * 179.72398 * 17 15 14 19 19 H 1.07991 * 119.99993 * 216.14839 * 18 17 15 20 20 C 1.38955 * 119.99491 * 36.14507 * 18 17 15 21 21 N 1.31409 * 119.99655 * 23.97513 * 20 18 17 22 22 Si 1.86791 * 119.99758 * 203.97707 * 20 18 17 23 23 H 1.48497 * 109.47383 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47324 * 120.00426 * 22 20 18 25 25 H 1.48510 * 109.46975 * 240.00167 * 22 20 18 26 26 C 1.46498 * 119.99956 * 0.02562 * 17 15 14 27 27 C 1.53002 * 117.49758 * 184.05334 * 26 17 15 28 28 C 1.53002 * 60.00101 * 252.50552 * 27 26 17 29 29 H 1.08998 * 109.46913 * 262.36043 * 1 2 3 30 30 H 1.09003 * 109.46851 * 22.36376 * 1 2 3 31 31 H 1.08995 * 109.47226 * 142.36078 * 1 2 3 32 32 H 1.08004 * 120.03625 * 359.95876 * 3 2 1 33 33 H 1.08002 * 120.02726 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.88749 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46554 * 158.91125 * 10 8 7 36 36 H 1.08995 * 109.47086 * 278.90657 * 10 8 7 37 37 H 1.09000 * 109.47212 * 38.91041 * 10 8 7 38 38 H 1.09010 * 110.81927 * 268.12936 * 11 8 7 39 39 H 1.08992 * 110.82485 * 144.58190 * 11 8 7 40 40 H 1.09006 * 109.46834 * 60.11889 * 14 12 6 41 41 H 1.08996 * 109.47142 * 300.12800 * 14 12 6 42 42 H 0.97005 * 119.99553 * 174.93993 * 21 20 18 43 43 H 1.08995 * 115.55023 * 329.75618 * 26 17 15 44 44 H 1.09001 * 117.50087 * 359.97438 * 27 26 17 45 45 H 1.09003 * 117.49972 * 145.01688 * 27 26 17 46 46 H 1.08996 * 117.49758 * 252.51131 * 28 27 26 47 47 H 1.08998 * 117.49514 * 107.48735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.1976 0.0000 4 6 3.5777 1.1986 0.0005 5 6 4.2679 0.0019 0.0016 6 6 3.5796 -1.1994 0.0016 7 6 2.1970 -1.2004 0.0011 8 6 1.6865 -2.6254 0.0006 9 1 1.3628 -2.9116 1.0014 10 6 0.5333 -2.7780 -0.9933 11 6 2.8901 -3.4855 -0.4394 12 6 4.0922 -2.6237 0.0021 13 1 4.4159 -2.9102 1.0027 14 6 5.2461 -2.7730 -0.9914 15 6 5.7395 -4.1968 -0.9779 16 8 5.2295 -5.0084 -0.2347 17 7 6.7475 -4.5684 -1.7918 18 6 7.2002 -5.8625 -1.7755 19 1 8.2519 -6.0683 -1.9092 20 6 6.3058 -6.9090 -1.5868 21 7 5.0365 -6.7507 -1.8876 22 14 6.9080 -8.5408 -0.9056 23 1 8.3687 -8.4619 -0.6505 24 1 6.1985 -8.8392 0.3644 25 1 6.6355 -9.6189 -1.8900 26 6 7.3637 -3.5881 -2.6891 27 6 8.4377 -4.0920 -3.6554 28 6 8.8336 -3.2372 -2.4498 29 1 -0.3633 -0.1366 1.0185 30 1 -0.3633 0.9504 -0.3910 31 1 -0.3633 -0.8137 -0.6275 32 1 1.6544 2.1323 -0.0007 33 1 4.1175 2.1340 0.0001 34 1 5.3479 0.0035 0.0016 35 1 0.4243 -3.8280 -1.2648 36 1 -0.3901 -2.4233 -0.5356 37 1 0.7443 -2.1914 -1.8875 38 1 2.8907 -3.6272 -1.5202 39 1 2.8906 -4.4448 0.0781 40 1 6.0587 -2.1041 -0.7076 41 1 4.8987 -2.5182 -1.9926 42 1 4.4261 -7.5021 -1.8257 43 1 6.7065 -2.7915 -3.0377 44 1 8.6860 -5.1529 -3.6231 45 1 8.4871 -3.6270 -4.6400 46 1 9.1434 -2.2098 -2.6413 47 1 9.3421 -3.7357 -1.6246 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489897952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:13 Heat of formation + Delta-G solvation = 8.487171 kcal Electronic energy + Delta-G solvation = -26753.151699 eV Core-core repulsion = 23287.056062 eV Total energy + Delta-G solvation = -3466.095637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55917 -40.22353 -37.92068 -36.92486 -35.03018 -34.49843 -32.89441 -31.82279 -30.44109 -28.77939 -27.69941 -26.40369 -24.49867 -23.14230 -22.87124 -22.72782 -21.56907 -21.09473 -20.15139 -18.31604 -17.82172 -17.17033 -16.65323 -16.26999 -16.09056 -15.92219 -15.66441 -15.51810 -15.20729 -14.52031 -14.43398 -14.32598 -14.08340 -13.75284 -13.57117 -13.44354 -13.11047 -12.95207 -12.90157 -12.84320 -12.72160 -12.58692 -12.38937 -12.25342 -12.09240 -12.03154 -11.77982 -11.70625 -11.59400 -11.42663 -11.22610 -11.16724 -10.73200 -9.77727 -9.39467 -9.36491 -8.92282 -8.15798 -5.84181 0.51874 0.53245 1.35107 1.43220 1.49928 2.31120 2.47208 2.86905 3.10316 3.15789 3.41698 3.55393 3.60885 3.94051 4.00632 4.12287 4.14527 4.18347 4.22883 4.29322 4.31867 4.41721 4.49015 4.50900 4.54189 4.68469 4.71229 4.73809 4.84107 4.87404 4.88462 4.94279 5.02134 5.08365 5.11050 5.14501 5.19148 5.24337 5.28904 5.35874 5.42653 5.44744 5.53234 5.53724 5.66913 5.73699 5.88735 6.20561 6.21186 7.06873 7.29014 7.79355 8.47244 8.92175 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.004274 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.490295 B = 6549.125446 C = 7773.442743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.098 4.098 7 C -0.102 4.102 8 C -0.051 4.051 9 H 0.080 0.920 10 C -0.139 4.139 11 C -0.086 4.086 12 C -0.024 4.024 13 H 0.063 0.937 14 C -0.102 4.102 15 C 0.456 3.544 16 O -0.571 6.571 17 N -0.445 5.445 18 C -0.362 4.362 19 H 0.079 0.921 20 C 0.026 3.974 21 N -0.852 5.852 22 Si 0.961 3.039 23 H -0.261 1.261 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.045 3.955 27 C -0.172 4.172 28 C -0.180 4.180 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.256 0.744 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 17.284 0.303 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.098 4.098 7 C -0.102 4.102 8 C -0.069 4.069 9 H 0.098 0.902 10 C -0.196 4.196 11 C -0.124 4.124 12 C -0.043 4.043 13 H 0.081 0.919 14 C -0.143 4.143 15 C 0.245 3.755 16 O -0.451 6.451 17 N -0.166 5.166 18 C -0.490 4.490 19 H 0.096 0.904 20 C -0.181 4.181 21 N -0.487 5.487 22 Si 0.788 3.212 23 H -0.185 1.185 24 H -0.224 1.224 25 H -0.202 1.202 26 C -0.061 4.061 27 C -0.210 4.210 28 C -0.218 4.218 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.143 0.857 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.934 16.789 0.721 17.821 hybrid contribution 0.498 -1.585 0.293 1.687 sum -5.435 15.204 1.014 16.178 Atomic orbital electron populations 1.21121 0.89898 1.04139 1.03073 1.19720 0.97235 0.91369 0.99661 1.21275 0.94440 0.97679 1.01137 1.21319 0.94631 0.97885 0.99663 1.20831 1.00450 0.91251 1.01593 1.20620 0.94815 0.94131 1.00261 1.20518 0.93882 0.94655 1.01180 1.20658 0.95632 0.90637 0.99991 0.90154 1.21902 0.97642 1.01505 0.98506 1.22104 0.93290 0.97281 0.99725 1.20234 0.94778 0.91038 0.98250 0.91885 1.21468 0.98462 0.94182 1.00137 1.20548 0.82885 0.89964 0.82064 1.90479 1.57637 1.54594 1.42437 1.43100 1.32845 1.07551 1.33068 1.19131 0.92927 0.82331 1.54565 0.90374 1.25783 0.94902 1.01476 0.95959 1.70007 1.04896 1.31605 1.42214 0.85388 0.78691 0.79354 0.77815 1.18498 1.22439 1.20151 1.21959 0.90382 0.95839 0.97889 1.23130 1.02549 1.00226 0.95096 1.23316 0.97684 1.01250 0.99575 0.90816 0.90134 0.90200 0.83357 0.83292 0.85533 0.93141 0.89724 0.92666 0.93342 0.93219 0.88938 0.90556 0.93487 0.85990 0.90133 0.86470 0.85738 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.64 71.24 0.69 -1.50 16 2 C -0.08 -1.87 5.86 -19.83 -0.12 -1.99 16 3 C -0.13 -2.59 9.67 22.24 0.21 -2.38 16 4 C -0.12 -2.47 10.05 22.24 0.22 -2.24 16 5 C -0.12 -3.23 9.74 22.30 0.22 -3.01 16 6 C -0.10 -3.09 5.60 -19.60 -0.11 -3.20 16 7 C -0.10 -2.99 5.45 -19.60 -0.11 -3.09 16 8 C -0.05 -1.57 3.34 -10.87 -0.04 -1.61 16 9 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 10 C -0.14 -3.57 7.77 71.98 0.56 -3.01 16 11 C -0.09 -3.44 4.98 31.51 0.16 -3.28 16 12 C -0.02 -0.93 2.52 -10.87 -0.03 -0.95 16 13 H 0.06 2.65 8.06 -2.38 -0.02 2.63 16 14 C -0.10 -4.04 3.59 29.85 0.11 -3.93 16 15 C 0.46 23.49 6.78 87.65 0.59 24.08 16 16 O -0.57 -34.14 11.80 -3.06 -0.04 -34.18 16 17 N -0.45 -22.58 2.89 -613.14 -1.77 -24.35 16 18 C -0.36 -20.25 8.26 84.04 0.69 -19.56 16 19 H 0.08 4.24 6.92 -2.92 -0.02 4.22 16 20 C 0.03 1.52 4.21 84.93 0.36 1.87 16 21 N -0.85 -52.18 11.39 21.66 0.25 -51.93 16 22 Si 0.96 46.75 29.62 68.60 2.03 48.78 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.04 1.74 5.91 44.99 0.27 2.00 16 27 C -0.17 -5.94 9.77 30.60 0.30 -5.64 16 28 C -0.18 -5.73 10.34 30.60 0.32 -5.42 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.07 8.02 -2.39 -0.02 1.05 16 31 H 0.08 1.39 4.40 -2.39 -0.01 1.38 16 32 H 0.15 2.07 8.05 -2.91 -0.02 2.05 16 33 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.13 2.99 7.82 -2.91 -0.02 2.96 16 35 H 0.05 1.38 8.06 -2.39 -0.02 1.36 16 36 H 0.08 1.69 6.21 -2.39 -0.01 1.68 16 37 H 0.05 1.42 7.93 -2.39 -0.02 1.40 16 38 H 0.05 2.09 7.66 -2.38 -0.02 2.07 16 39 H 0.05 2.31 7.46 -2.39 -0.02 2.29 16 40 H 0.09 3.19 7.83 -2.38 -0.02 3.17 16 41 H 0.08 2.92 7.49 -2.39 -0.02 2.90 16 42 H 0.26 15.17 8.32 -92.70 -0.77 14.40 16 43 H 0.12 4.20 6.91 -2.39 -0.02 4.19 16 44 H 0.08 3.20 6.56 -2.39 -0.02 3.19 16 45 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -72.53 366.95 5.72 -66.81 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.96 Total: 27.74 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 4.30 Total: -32.86 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.53 Total: -76.28 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.04 Total: -34.18 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.53 5.72 -66.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489897952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.295 kcal (2) G-P(sol) polarization free energy of solvation -72.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds