Wall clock time and date at job start Fri Apr 10 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38153 * 119.89263 * 2 1 4 4 C 1.38210 * 119.93585 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.93388 * 0.02562 * 4 3 2 6 6 C 1.38452 * 120.21503 * 0.25429 * 5 4 3 7 7 C 1.38258 * 119.85148 * 359.50933 * 6 5 4 8 8 C 1.51365 * 109.75477 * 180.28081 * 7 6 5 9 9 H 1.09004 * 110.30227 * 258.47241 * 8 7 6 10 10 C 1.52998 * 110.30482 * 136.32324 * 8 7 6 11 11 C 1.54347 * 105.17283 * 17.39478 * 8 7 6 12 12 C 1.51366 * 130.39580 * 180.26849 * 6 5 4 13 13 H 1.09000 * 110.43305 * 43.41184 * 12 6 5 14 14 C 1.53010 * 110.20303 * 281.34322 * 12 6 5 15 15 C 1.50688 * 109.47244 * 69.24289 * 14 12 6 16 16 O 1.21301 * 120.00347 * 359.97438 * 15 14 12 17 17 N 1.34783 * 119.99939 * 179.97438 * 15 14 12 18 18 C 1.37100 * 119.99966 * 179.97438 * 17 15 14 19 19 H 1.07989 * 120.00231 * 223.54906 * 18 17 15 20 20 C 1.38960 * 119.99674 * 43.55191 * 18 17 15 21 21 N 1.31408 * 119.99951 * 18.79006 * 20 18 17 22 22 Si 1.86797 * 119.99674 * 198.78889 * 20 18 17 23 23 H 1.48496 * 109.47201 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47128 * 120.00104 * 22 20 18 25 25 H 1.48507 * 109.46944 * 240.00104 * 22 20 18 26 26 C 1.46492 * 119.99786 * 0.02562 * 17 15 14 27 27 C 1.53003 * 117.49745 * 183.62210 * 26 17 15 28 28 C 1.52999 * 117.50152 * 114.99958 * 26 17 15 29 29 H 1.08997 * 109.47129 * 55.28012 * 1 2 3 30 30 H 1.09001 * 109.47316 * 175.27729 * 1 2 3 31 31 H 1.09000 * 109.47164 * 295.27678 * 1 2 3 32 32 H 1.08000 * 120.03345 * 359.97416 * 3 2 1 33 33 H 1.08002 * 120.03438 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.89298 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47793 * 81.25439 * 10 8 7 36 36 H 1.09006 * 109.47067 * 201.25560 * 10 8 7 37 37 H 1.09005 * 109.47067 * 321.25404 * 10 8 7 38 38 H 1.08996 * 110.82096 * 91.88062 * 11 8 7 39 39 H 1.09000 * 110.82185 * 215.42405 * 11 8 7 40 40 H 1.09005 * 109.46550 * 189.24514 * 14 12 6 41 41 H 1.08997 * 109.46574 * 309.23978 * 14 12 6 42 42 H 0.96996 * 119.99681 * 184.95127 * 21 20 18 43 43 H 1.09000 * 115.55198 * 329.32180 * 26 17 15 44 44 H 1.09000 * 117.49636 * 359.97438 * 27 26 17 45 45 H 1.08994 * 117.50276 * 145.01882 * 27 26 17 46 46 H 1.09002 * 117.49803 * 214.98025 * 28 26 17 47 47 H 1.09000 * 117.49818 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.1977 0.0000 4 6 3.5775 1.1988 0.0005 5 6 4.2678 0.0021 0.0005 6 6 3.5796 -1.1992 -0.0053 7 6 2.1970 -1.2003 -0.0009 8 6 1.6865 -2.6253 -0.0018 9 1 1.3634 -2.9107 -1.0030 10 6 0.5336 -2.7769 0.9925 11 6 2.8900 -3.4858 0.4381 12 6 4.0922 -2.6235 -0.0012 13 1 4.9134 -2.7303 0.7076 14 6 4.5486 -3.0248 -1.4054 15 6 5.7953 -2.2593 -1.7664 16 8 6.2719 -1.4698 -0.9784 17 7 6.3810 -2.4518 -2.9650 18 6 7.5150 -1.7549 -3.2937 19 1 7.6163 -1.3213 -4.2775 20 6 8.5341 -1.6065 -2.3607 21 7 8.5984 -2.4118 -1.3242 22 14 9.8126 -0.2624 -2.5801 23 1 9.5187 0.5031 -3.8181 24 1 9.7738 0.6531 -1.4116 25 1 11.1616 -0.8747 -2.6846 26 6 5.8051 -3.4048 -3.9170 27 6 6.5625 -3.6415 -5.2251 28 6 5.2555 -2.8461 -5.2310 29 1 -0.3633 0.5853 -0.8447 30 1 -0.3634 -1.0242 -0.0846 31 1 -0.3633 0.4388 0.9293 32 1 1.6542 2.1323 -0.0004 33 1 4.1174 2.1342 0.0010 34 1 5.3478 0.0037 0.0005 35 1 -0.3902 -2.4240 0.5344 36 1 0.4256 -3.8265 1.2662 37 1 0.7443 -2.1884 1.8855 38 1 2.8898 -3.6285 1.5187 39 1 2.8908 -4.4447 -0.0803 40 1 4.7596 -4.0941 -1.4270 41 1 3.7607 -2.7954 -2.1228 42 1 9.2657 -2.2640 -0.6360 43 1 5.2854 -4.2549 -3.4750 44 1 7.4889 -3.0879 -5.3776 45 1 6.5412 -4.6475 -5.6440 46 1 4.3743 -3.3289 -5.6537 47 1 5.3220 -1.7694 -5.3870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489897955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:16 Heat of formation + Delta-G solvation = 21.512053 kcal Electronic energy + Delta-G solvation = -27145.262038 eV Core-core repulsion = 23679.731202 eV Total energy + Delta-G solvation = -3465.530836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29956 -38.41039 -36.29865 -35.73676 -33.52484 -32.61475 -31.10601 -30.41347 -29.11563 -27.35786 -26.47276 -24.64846 -23.25821 -21.69505 -21.57561 -21.15912 -20.30411 -19.52862 -18.52307 -16.42851 -16.09878 -15.77841 -15.27563 -14.91182 -14.63857 -14.44989 -14.12916 -13.86952 -13.62820 -13.45456 -13.16390 -13.00624 -12.58953 -12.41629 -12.15894 -12.00797 -11.88167 -11.55190 -11.48515 -11.24485 -11.20038 -10.95573 -10.84438 -10.81768 -10.59447 -10.52989 -10.27054 -10.22697 -10.08614 -9.93926 -9.82605 -9.70896 -8.65820 -8.09205 -8.05146 -7.87831 -6.97423 -6.04863 -3.82787 1.83269 1.89673 3.32658 3.42186 3.43217 4.16653 4.24720 4.31836 4.69261 4.78051 4.82615 4.91709 5.10019 5.18173 5.27017 5.29942 5.41974 5.46977 5.57617 5.60338 5.63041 5.68116 5.73706 5.78034 5.80498 5.82924 5.91711 5.98600 6.02191 6.10877 6.14375 6.17840 6.23654 6.25652 6.35836 6.41350 6.41929 6.49318 6.57237 6.70123 6.78609 6.82169 6.95009 6.97551 7.13157 7.33236 7.57698 7.66713 8.32101 9.12634 9.23597 9.73336 10.37551 11.01667 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.004842 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.405896 B = 5781.148555 C = 6524.496259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.086 4.086 6 C -0.065 4.065 7 C -0.100 4.100 8 C -0.050 4.050 9 H 0.080 0.920 10 C -0.146 4.146 11 C -0.113 4.113 12 C -0.033 4.033 13 H 0.087 0.913 14 C -0.121 4.121 15 C 0.488 3.512 16 O -0.527 6.527 17 N -0.431 5.431 18 C -0.342 4.342 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.832 5.832 22 Si 0.903 3.097 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.287 1.287 26 C 0.077 3.923 27 C -0.175 4.175 28 C -0.208 4.208 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.262 0.738 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 -1.403 1.556 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.104 4.104 6 C -0.065 4.065 7 C -0.100 4.100 8 C -0.068 4.068 9 H 0.098 0.902 10 C -0.203 4.203 11 C -0.151 4.151 12 C -0.052 4.052 13 H 0.105 0.895 14 C -0.162 4.162 15 C 0.276 3.724 16 O -0.405 6.405 17 N -0.152 5.152 18 C -0.469 4.469 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.466 5.466 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.214 1.214 26 C -0.030 4.030 27 C -0.212 4.212 28 C -0.248 4.248 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.251 -1.078 2.129 14.449 hybrid contribution 0.751 0.663 -0.259 1.035 sum -13.500 -0.416 1.869 13.635 Atomic orbital electron populations 1.21000 0.92278 1.03071 1.01379 1.19214 0.95155 0.91947 1.02426 1.20778 0.94340 0.96710 1.02977 1.21074 0.93954 0.98022 1.01550 1.21383 1.02381 0.90567 0.96056 1.20384 0.92953 0.94875 0.98310 1.20392 0.94279 0.93713 1.01641 1.20602 0.95441 0.91329 0.99392 0.90199 1.22015 0.97666 1.01333 0.99252 1.22480 0.93630 0.97959 1.01014 1.20387 0.97247 0.90363 0.97222 0.89511 1.21609 0.97958 1.00394 0.96195 1.19729 0.84595 0.84804 0.83298 1.90381 1.64387 1.37353 1.48393 1.42797 1.23615 1.35488 1.13342 1.18859 0.93828 1.32759 1.01431 0.90795 1.25114 0.96179 0.95795 0.96366 1.69887 1.33630 1.32913 1.10189 0.86310 0.80338 0.82048 0.78332 1.19722 1.20715 1.21359 1.21681 1.00851 0.94792 0.85634 1.23054 0.96729 1.00219 1.01239 1.23301 0.96897 1.00253 1.04306 0.92197 0.90824 0.92094 0.86937 0.86648 0.83367 0.92175 0.92662 0.92476 0.91099 0.90726 0.90627 0.90953 0.92791 0.88120 0.87577 0.89892 0.89918 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.58 36.00 0.35 -1.01 16 2 C -0.09 -1.29 5.86 -104.58 -0.61 -1.91 16 3 C -0.13 -1.98 9.73 -39.62 -0.39 -2.37 16 4 C -0.13 -2.21 10.05 -39.62 -0.40 -2.61 16 5 C -0.09 -1.72 9.07 -39.53 -0.36 -2.08 16 6 C -0.07 -1.21 5.15 -104.21 -0.54 -1.74 16 7 C -0.10 -1.59 5.44 -104.21 -0.57 -2.15 16 8 C -0.05 -0.64 3.19 -90.74 -0.29 -0.93 16 9 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.15 -1.52 8.21 37.16 0.31 -1.22 16 11 C -0.11 -1.54 6.05 -25.32 -0.15 -1.69 16 12 C -0.03 -0.59 2.50 -90.74 -0.23 -0.82 16 13 H 0.09 1.74 7.91 -51.93 -0.41 1.33 16 14 C -0.12 -2.30 3.70 -27.88 -0.10 -2.40 16 15 C 0.49 11.93 6.75 -10.99 -0.07 11.85 16 16 O -0.53 -14.41 10.10 5.54 0.06 -14.35 16 17 N -0.43 -10.66 2.84 -107.73 -0.31 -10.96 16 18 C -0.34 -9.28 7.94 -14.93 -0.12 -9.39 16 19 H 0.07 1.98 7.24 -52.49 -0.38 1.60 16 20 C 0.08 2.10 4.37 -17.47 -0.08 2.03 16 21 N -0.83 -24.31 11.71 55.50 0.65 -23.66 16 22 Si 0.90 21.89 29.60 -169.99 -5.03 16.86 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.08 1.54 5.88 -67.93 -0.40 1.14 16 27 C -0.17 -3.18 9.80 -26.73 -0.26 -3.44 16 28 C -0.21 -3.63 10.35 -26.73 -0.28 -3.91 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.75 4.31 -51.93 -0.22 0.53 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.15 3.43 5.70 -52.49 -0.30 3.13 16 35 H 0.06 0.55 5.73 -51.93 -0.30 0.26 16 36 H 0.05 0.50 8.05 -51.93 -0.42 0.09 16 37 H 0.06 0.64 7.99 -51.93 -0.41 0.22 16 38 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 39 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 40 H 0.08 1.33 7.51 -51.93 -0.39 0.94 16 41 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 42 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 43 H 0.10 1.80 6.94 -51.93 -0.36 1.44 16 44 H 0.11 2.15 6.72 -51.93 -0.35 1.80 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -31.23 364.45 -10.63 -41.86 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.30 Total: 7.43 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -4.19 Total: -22.66 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.34 Total: -34.63 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.06 Total: -14.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.23 -10.63 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489897955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.370 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds