Wall clock time and date at job start Fri Apr 10 2020 22:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38153 * 119.89263 * 2 1 4 4 C 1.38210 * 119.93585 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.93388 * 0.02562 * 4 3 2 6 6 C 1.38452 * 120.21503 * 0.25429 * 5 4 3 7 7 C 1.38258 * 119.85148 * 359.50933 * 6 5 4 8 8 C 1.51365 * 109.75477 * 180.28081 * 7 6 5 9 9 H 1.09004 * 110.30227 * 258.47241 * 8 7 6 10 10 C 1.52998 * 110.30482 * 136.32324 * 8 7 6 11 11 C 1.54347 * 105.17283 * 17.39478 * 8 7 6 12 12 C 1.51366 * 130.39580 * 180.26849 * 6 5 4 13 13 H 1.09000 * 110.43305 * 43.41184 * 12 6 5 14 14 C 1.53010 * 110.20303 * 281.34322 * 12 6 5 15 15 C 1.50688 * 109.47244 * 69.24289 * 14 12 6 16 16 O 1.21301 * 120.00347 * 359.97438 * 15 14 12 17 17 N 1.34783 * 119.99939 * 179.97438 * 15 14 12 18 18 C 1.37100 * 119.99966 * 179.97438 * 17 15 14 19 19 H 1.07989 * 120.00231 * 223.54906 * 18 17 15 20 20 C 1.38960 * 119.99674 * 43.55191 * 18 17 15 21 21 N 1.31408 * 119.99951 * 18.79006 * 20 18 17 22 22 Si 1.86797 * 119.99674 * 198.78889 * 20 18 17 23 23 H 1.48496 * 109.47201 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47128 * 120.00104 * 22 20 18 25 25 H 1.48507 * 109.46944 * 240.00104 * 22 20 18 26 26 C 1.46492 * 119.99786 * 0.02562 * 17 15 14 27 27 C 1.53003 * 117.49745 * 183.62210 * 26 17 15 28 28 C 1.52999 * 117.50152 * 114.99958 * 26 17 15 29 29 H 1.08997 * 109.47129 * 55.28012 * 1 2 3 30 30 H 1.09001 * 109.47316 * 175.27729 * 1 2 3 31 31 H 1.09000 * 109.47164 * 295.27678 * 1 2 3 32 32 H 1.08000 * 120.03345 * 359.97416 * 3 2 1 33 33 H 1.08002 * 120.03438 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.89298 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47793 * 81.25439 * 10 8 7 36 36 H 1.09006 * 109.47067 * 201.25560 * 10 8 7 37 37 H 1.09005 * 109.47067 * 321.25404 * 10 8 7 38 38 H 1.08996 * 110.82096 * 91.88062 * 11 8 7 39 39 H 1.09000 * 110.82185 * 215.42405 * 11 8 7 40 40 H 1.09005 * 109.46550 * 189.24514 * 14 12 6 41 41 H 1.08997 * 109.46574 * 309.23978 * 14 12 6 42 42 H 0.96996 * 119.99681 * 184.95127 * 21 20 18 43 43 H 1.09000 * 115.55198 * 329.32180 * 26 17 15 44 44 H 1.09000 * 117.49636 * 359.97438 * 27 26 17 45 45 H 1.08994 * 117.50276 * 145.01882 * 27 26 17 46 46 H 1.09002 * 117.49803 * 214.98025 * 28 26 17 47 47 H 1.09000 * 117.49818 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.1977 0.0000 4 6 3.5775 1.1988 0.0005 5 6 4.2678 0.0021 0.0005 6 6 3.5796 -1.1992 -0.0053 7 6 2.1970 -1.2003 -0.0009 8 6 1.6865 -2.6253 -0.0018 9 1 1.3634 -2.9107 -1.0030 10 6 0.5336 -2.7769 0.9925 11 6 2.8900 -3.4858 0.4381 12 6 4.0922 -2.6235 -0.0012 13 1 4.9134 -2.7303 0.7076 14 6 4.5486 -3.0248 -1.4054 15 6 5.7953 -2.2593 -1.7664 16 8 6.2719 -1.4698 -0.9784 17 7 6.3810 -2.4518 -2.9650 18 6 7.5150 -1.7549 -3.2937 19 1 7.6163 -1.3213 -4.2775 20 6 8.5341 -1.6065 -2.3607 21 7 8.5984 -2.4118 -1.3242 22 14 9.8126 -0.2624 -2.5801 23 1 9.5187 0.5031 -3.8181 24 1 9.7738 0.6531 -1.4116 25 1 11.1616 -0.8747 -2.6846 26 6 5.8051 -3.4048 -3.9170 27 6 6.5625 -3.6415 -5.2251 28 6 5.2555 -2.8461 -5.2310 29 1 -0.3633 0.5853 -0.8447 30 1 -0.3634 -1.0242 -0.0846 31 1 -0.3633 0.4388 0.9293 32 1 1.6542 2.1323 -0.0004 33 1 4.1174 2.1342 0.0010 34 1 5.3478 0.0037 0.0005 35 1 -0.3902 -2.4240 0.5344 36 1 0.4256 -3.8265 1.2662 37 1 0.7443 -2.1884 1.8855 38 1 2.8898 -3.6285 1.5187 39 1 2.8908 -4.4447 -0.0803 40 1 4.7596 -4.0941 -1.4270 41 1 3.7607 -2.7954 -2.1228 42 1 9.2657 -2.2640 -0.6360 43 1 5.2854 -4.2549 -3.4750 44 1 7.4889 -3.0879 -5.3776 45 1 6.5412 -4.6475 -5.6440 46 1 4.3743 -3.3289 -5.6537 47 1 5.3220 -1.7694 -5.3870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489897955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:15 Heat of formation + Delta-G solvation = 6.241415 kcal Electronic energy + Delta-G solvation = -27145.924222 eV Core-core repulsion = 23679.731202 eV Total energy + Delta-G solvation = -3466.193020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58835 -40.12621 -37.82746 -37.09997 -34.97723 -34.31830 -32.90167 -31.78402 -30.38290 -28.64306 -27.73766 -26.37117 -24.50799 -23.15031 -22.78395 -22.77410 -21.66896 -21.05758 -19.96391 -18.25619 -17.80555 -17.10775 -16.69334 -16.53665 -16.16538 -15.86490 -15.60299 -15.41712 -15.08657 -14.64782 -14.31660 -14.19960 -14.08413 -13.85972 -13.44524 -13.28742 -13.12674 -13.01573 -12.92450 -12.77923 -12.64753 -12.51338 -12.34442 -12.24356 -12.19836 -12.04080 -11.77590 -11.63424 -11.39339 -11.34101 -11.20542 -11.14529 -10.68867 -9.80053 -9.34845 -9.32575 -8.92556 -8.15012 -5.95777 0.54561 0.59091 1.32414 1.38967 1.46311 2.30619 2.46825 2.91176 3.09501 3.16214 3.40485 3.59071 3.66401 4.03864 4.04125 4.12420 4.14038 4.22229 4.28871 4.30834 4.35531 4.44115 4.52980 4.61032 4.61664 4.72036 4.76737 4.82195 4.88413 4.92887 4.94745 4.98647 5.04332 5.08642 5.12974 5.17782 5.26634 5.30058 5.31725 5.38936 5.45952 5.49645 5.50878 5.60778 5.75190 5.78846 5.98994 6.22501 6.28042 7.08218 7.29219 7.78030 8.47031 8.89366 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.004842 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.405896 B = 5781.148555 C = 6524.496259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.141 4.141 5 C -0.124 4.124 6 C -0.091 4.091 7 C -0.099 4.099 8 C -0.045 4.045 9 H 0.095 0.905 10 C -0.141 4.141 11 C -0.103 4.103 12 C -0.035 4.035 13 H 0.046 0.954 14 C -0.104 4.104 15 C 0.469 3.531 16 O -0.567 6.567 17 N -0.451 5.451 18 C -0.346 4.346 19 H 0.069 0.931 20 C 0.027 3.973 21 N -0.868 5.868 22 Si 0.956 3.044 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.275 1.275 26 C 0.047 3.953 27 C -0.171 4.171 28 C -0.183 4.183 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.255 0.745 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.785 -2.638 0.408 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.159 4.159 5 C -0.142 4.142 6 C -0.091 4.091 7 C -0.099 4.099 8 C -0.063 4.063 9 H 0.113 0.887 10 C -0.197 4.197 11 C -0.140 4.140 12 C -0.054 4.054 13 H 0.064 0.936 14 C -0.144 4.144 15 C 0.258 3.742 16 O -0.447 6.447 17 N -0.173 5.173 18 C -0.474 4.474 19 H 0.087 0.913 20 C -0.179 4.179 21 N -0.504 5.504 22 Si 0.782 3.218 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.058 4.058 27 C -0.209 4.209 28 C -0.222 4.222 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.145 0.855 44 H 0.096 0.904 45 H 0.136 0.864 46 H 0.143 0.857 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.391 -2.326 0.939 18.562 hybrid contribution 2.002 1.106 0.054 2.287 sum -16.390 -1.220 0.993 16.465 Atomic orbital electron populations 1.21074 0.88932 1.04569 1.02814 1.19733 0.97526 0.91168 1.00119 1.21131 0.93238 0.98587 1.01707 1.21195 0.95426 0.97206 1.02118 1.21177 1.00354 0.92951 0.99734 1.20549 0.94666 0.94438 0.99477 1.20796 0.92905 0.95909 1.00301 1.20671 0.95834 0.88767 1.01020 0.88698 1.21981 0.97048 1.02592 0.98116 1.22488 0.91550 0.98231 1.01764 1.20405 0.97895 0.91513 0.95612 0.93565 1.21498 0.95447 1.00284 0.97221 1.20766 0.85890 0.84693 0.82838 1.90390 1.65772 1.38932 1.49617 1.43047 1.23220 1.36530 1.14480 1.19012 0.94500 1.32845 1.01032 0.91292 1.25833 0.98103 0.97554 0.96364 1.69983 1.34735 1.34532 1.11123 0.85479 0.78849 0.79690 0.77815 1.18626 1.22269 1.20098 1.22013 1.02681 0.95369 0.85758 1.23093 0.95968 1.01880 0.99959 1.23299 0.97971 0.99294 1.01608 0.90849 0.89373 0.90420 0.83868 0.86232 0.88178 0.90265 0.90817 0.93381 0.90387 0.88346 0.88912 0.89245 0.93540 0.85538 0.90422 0.86382 0.85714 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.58 71.23 0.68 -1.42 16 2 C -0.09 -2.31 5.86 -19.83 -0.12 -2.43 16 3 C -0.13 -3.76 9.73 22.24 0.22 -3.55 16 4 C -0.14 -5.11 10.05 22.24 0.22 -4.89 16 5 C -0.12 -5.38 9.07 22.30 0.20 -5.18 16 6 C -0.09 -3.49 5.15 -19.60 -0.10 -3.60 16 7 C -0.10 -2.97 5.44 -19.60 -0.11 -3.08 16 8 C -0.04 -1.01 3.19 -10.87 -0.03 -1.04 16 9 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 10 C -0.14 -2.30 8.21 71.98 0.59 -1.71 16 11 C -0.10 -2.57 6.05 31.51 0.19 -2.38 16 12 C -0.04 -1.29 2.50 -10.87 -0.03 -1.31 16 13 H 0.05 2.01 7.91 -2.39 -0.02 1.99 16 14 C -0.10 -3.96 3.70 29.85 0.11 -3.85 16 15 C 0.47 23.94 6.75 87.65 0.59 24.53 16 16 O -0.57 -33.46 10.10 -3.10 -0.03 -33.49 16 17 N -0.45 -22.92 2.84 -613.14 -1.74 -24.67 16 18 C -0.35 -19.55 7.94 84.04 0.67 -18.88 16 19 H 0.07 3.85 7.24 -2.92 -0.02 3.82 16 20 C 0.03 1.59 4.37 84.93 0.37 1.96 16 21 N -0.87 -53.59 11.71 21.67 0.25 -53.33 16 22 Si 0.96 47.20 29.60 68.60 2.03 49.23 16 23 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.05 1.83 5.88 44.99 0.26 2.09 16 27 C -0.17 -5.98 9.80 30.60 0.30 -5.68 16 28 C -0.18 -5.96 10.35 30.59 0.32 -5.64 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.33 4.31 -2.39 -0.01 1.32 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 34 H 0.10 5.26 5.70 -2.91 -0.02 5.24 16 35 H 0.08 1.01 5.73 -2.39 -0.01 1.00 16 36 H 0.07 0.97 8.05 -2.38 -0.02 0.96 16 37 H 0.05 0.89 7.99 -2.38 -0.02 0.87 16 38 H 0.08 1.83 7.91 -2.39 -0.02 1.81 16 39 H 0.10 1.99 7.86 -2.39 -0.02 1.97 16 40 H 0.09 3.15 7.51 -2.38 -0.02 3.13 16 41 H 0.09 3.06 8.09 -2.39 -0.02 3.04 16 42 H 0.26 15.38 8.32 -92.71 -0.77 14.61 16 43 H 0.13 4.21 6.94 -2.39 -0.02 4.19 16 44 H 0.08 3.16 6.72 -2.39 -0.02 3.15 16 45 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -75.16 364.45 5.81 -69.34 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.96 Total: 28.95 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 4.34 Total: -36.03 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.49 Total: -78.00 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.03 Total: -33.49 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -75.16 5.81 -69.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489897955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.584 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds