Wall clock time and date at job start Fri Apr 10 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38146 * 119.89457 * 2 1 4 4 C 1.38207 * 119.93727 * 180.30066 * 3 2 1 5 5 C 1.38148 * 119.93404 * 359.95587 * 4 3 2 6 6 C 1.38449 * 120.21430 * 0.03926 * 5 4 3 7 7 C 1.38259 * 119.85274 * 359.97438 * 6 5 4 8 8 C 1.51373 * 109.75448 * 179.97438 * 7 6 5 9 9 H 1.09008 * 110.29866 * 258.26045 * 8 7 6 10 10 C 1.53002 * 110.30255 * 136.11458 * 8 7 6 11 11 C 1.54340 * 105.17259 * 17.18646 * 8 7 6 12 12 C 1.51367 * 130.39719 * 179.97438 * 6 5 4 13 13 H 1.08999 * 110.30490 * 281.77099 * 12 6 5 14 14 C 1.53002 * 110.38843 * 43.88528 * 12 6 5 15 15 C 1.50697 * 109.47614 * 180.24993 * 14 12 6 16 16 O 1.21297 * 119.99855 * 5.67509 * 15 14 12 17 17 N 1.34769 * 120.00424 * 185.67393 * 15 14 12 18 18 C 1.37098 * 120.00670 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00477 * 135.47906 * 18 17 15 20 20 C 1.38955 * 119.99347 * 315.48133 * 18 17 15 21 21 N 1.31410 * 119.99455 * 160.68810 * 20 18 17 22 22 Si 1.86798 * 120.00362 * 340.68759 * 20 18 17 23 23 H 1.48498 * 109.47136 * 95.29458 * 22 20 18 24 24 H 1.48494 * 109.46991 * 215.29511 * 22 20 18 25 25 H 1.48506 * 109.46820 * 335.29360 * 22 20 18 26 26 C 1.46505 * 119.99498 * 359.97438 * 17 15 14 27 27 C 1.53012 * 117.49507 * 191.20690 * 26 17 15 28 28 C 1.53005 * 117.49759 * 122.54861 * 26 17 15 29 29 H 1.08997 * 109.47122 * 269.72264 * 1 2 3 30 30 H 1.08991 * 109.47021 * 29.72687 * 1 2 3 31 31 H 1.09010 * 109.47140 * 149.72916 * 1 2 3 32 32 H 1.07998 * 120.02925 * 0.29085 * 3 2 1 33 33 H 1.07998 * 120.03099 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.89040 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47535 * 61.45079 * 10 8 7 36 36 H 1.08998 * 109.46752 * 181.45523 * 10 8 7 37 37 H 1.09002 * 109.46682 * 301.44721 * 10 8 7 38 38 H 1.08997 * 110.82205 * 91.87493 * 11 8 7 39 39 H 1.09003 * 110.82090 * 215.42737 * 11 8 7 40 40 H 1.09007 * 109.46581 * 300.25185 * 14 12 6 41 41 H 1.08998 * 109.47081 * 60.24892 * 14 12 6 42 42 H 0.97001 * 119.99532 * 179.97438 * 21 20 18 43 43 H 1.09003 * 115.55327 * 336.87353 * 26 17 15 44 44 H 1.08990 * 117.49760 * 0.02562 * 27 26 17 45 45 H 1.09003 * 117.49532 * 145.02259 * 27 26 17 46 46 H 1.08993 * 117.49773 * 214.97384 * 28 26 17 47 47 H 1.08990 * 117.49825 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1976 0.0000 4 6 3.5776 1.1987 -0.0063 5 6 4.2678 0.0020 -0.0116 6 6 3.5796 -1.1993 -0.0115 7 6 2.1970 -1.2004 -0.0055 8 6 1.6865 -2.6254 -0.0074 9 1 1.3588 -2.9084 -1.0078 10 6 0.5381 -2.7792 0.9919 11 6 2.8918 -3.4869 0.4251 12 6 4.0922 -2.6235 -0.0172 13 1 4.4121 -2.9064 -1.0200 14 6 5.2496 -2.7774 0.9716 15 6 5.7475 -4.1995 0.9449 16 8 5.2987 -4.9841 0.1361 17 7 6.6914 -4.5996 1.8197 18 6 7.1441 -5.8935 1.7958 19 1 8.2023 -6.0968 1.8665 20 6 6.2410 -6.9433 1.6805 21 7 6.6548 -8.1248 1.2809 22 14 4.4391 -6.6751 2.0935 23 1 3.6869 -6.3672 0.8507 24 1 3.8856 -7.9046 2.7155 25 1 4.3126 -5.5400 3.0428 26 6 7.2339 -3.6517 2.7962 27 6 8.4758 -4.0793 3.5811 28 6 7.1138 -4.0169 4.2772 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3633 0.8924 -0.5095 31 1 -0.3634 -0.8876 -0.5181 32 1 1.6543 2.1322 0.0047 33 1 4.1174 2.1341 -0.0067 34 1 5.3478 0.0036 -0.0161 35 1 -0.2863 -2.1282 0.7012 36 1 0.1984 -3.8149 0.9983 37 1 0.8843 -2.5043 1.9883 38 1 2.8967 -3.6319 1.5053 39 1 2.8903 -4.4445 -0.0956 40 1 6.0592 -2.1036 0.6909 41 1 4.9044 -2.5321 1.9760 42 1 6.0245 -8.8577 1.2007 43 1 7.1454 -2.5987 2.5287 44 1 8.8894 -5.0654 3.3706 45 1 9.2041 -3.3074 3.8303 46 1 6.9468 -3.2041 4.9839 47 1 6.6309 -4.9620 4.5249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489897959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:20 Heat of formation + Delta-G solvation = 19.093055 kcal Electronic energy + Delta-G solvation = -26971.685076 eV Core-core repulsion = 23506.049345 eV Total energy + Delta-G solvation = -3465.635732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55607 -38.99493 -36.66265 -35.84012 -33.91594 -32.85957 -31.53632 -30.83565 -29.47591 -27.74660 -26.61440 -24.76555 -23.26532 -21.95207 -21.83311 -21.36170 -20.40519 -19.74221 -18.75023 -17.04045 -16.34940 -16.01976 -15.50553 -15.31858 -14.79205 -14.75212 -14.36520 -13.97359 -13.66714 -13.49412 -13.46012 -13.14740 -12.88141 -12.67291 -12.49751 -12.45072 -12.11961 -12.01316 -11.81867 -11.55648 -11.41082 -11.12796 -11.00816 -10.76910 -10.71145 -10.59394 -10.41987 -10.31161 -10.20618 -10.05463 -9.95776 -9.66043 -8.56925 -8.55401 -8.48237 -8.32511 -7.40628 -6.19173 -3.96330 1.41543 1.43880 3.30790 3.46289 3.60298 3.77274 3.78453 4.34252 4.49556 4.53259 4.66884 4.67215 4.89343 4.97192 5.06500 5.12969 5.19688 5.23981 5.35888 5.42676 5.48108 5.49434 5.56124 5.56520 5.61726 5.63929 5.71319 5.76087 5.78614 5.84156 5.92208 6.02457 6.07752 6.12342 6.14931 6.19373 6.30468 6.33725 6.37060 6.50357 6.54782 6.59375 6.71281 6.72268 6.82055 6.87336 7.07650 7.86275 8.03241 8.80255 8.95809 9.44616 9.85740 10.86871 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.004732 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.554349 B = 5915.248258 C = 6884.128218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.129 4.129 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.078 4.078 7 C -0.088 4.088 8 C -0.055 4.055 9 H 0.083 0.917 10 C -0.151 4.151 11 C -0.107 4.107 12 C -0.031 4.031 13 H 0.095 0.905 14 C -0.127 4.127 15 C 0.459 3.541 16 O -0.540 6.540 17 N -0.440 5.440 18 C -0.348 4.348 19 H 0.094 0.906 20 C 0.095 3.905 21 N -0.867 5.867 22 Si 0.901 3.099 23 H -0.252 1.252 24 H -0.309 1.309 25 H -0.277 1.277 26 C 0.064 3.936 27 C -0.177 4.177 28 C -0.197 4.197 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.271 0.729 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 17.613 0.665 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.130 4.130 6 C -0.078 4.078 7 C -0.088 4.088 8 C -0.073 4.073 9 H 0.101 0.899 10 C -0.208 4.208 11 C -0.144 4.144 12 C -0.050 4.050 13 H 0.113 0.887 14 C -0.167 4.167 15 C 0.249 3.751 16 O -0.421 6.421 17 N -0.160 5.160 18 C -0.474 4.474 19 H 0.111 0.889 20 C -0.114 4.114 21 N -0.502 5.502 22 Si 0.730 3.270 23 H -0.177 1.177 24 H -0.238 1.238 25 H -0.202 1.202 26 C -0.042 4.042 27 C -0.215 4.215 28 C -0.236 4.236 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.378 17.001 0.187 19.417 hybrid contribution -0.613 0.138 0.425 0.759 sum -9.992 17.139 0.612 19.848 Atomic orbital electron populations 1.20906 0.91799 1.02366 1.02072 1.19377 0.95628 0.91887 1.00598 1.20847 0.94277 0.96911 1.02617 1.20957 0.94201 0.97544 1.01046 1.20628 0.99810 0.91244 1.01346 1.20712 0.94158 0.94887 0.98065 1.20468 0.94038 0.94282 0.99979 1.20723 0.96215 0.90606 0.99800 0.89854 1.22020 0.97858 1.01847 0.99114 1.22509 0.91683 0.98759 1.01458 1.20426 0.94871 0.89298 1.00393 0.88680 1.21692 0.98186 0.96549 1.00288 1.20257 0.83560 0.89097 0.82176 1.90535 1.57920 1.54827 1.38860 1.43165 1.36367 1.09629 1.26878 1.18708 0.94156 0.79081 1.55411 0.88879 1.25283 0.99510 0.94225 0.92405 1.69752 1.36670 1.02580 1.41150 0.86542 0.85503 0.76225 0.78695 1.17695 1.23785 1.20242 1.21853 1.01222 0.93438 0.87701 1.23131 0.90729 1.03711 1.03892 1.23234 1.01237 1.03264 0.95860 0.91324 0.92037 0.91177 0.86367 0.86206 0.86304 0.91861 0.92442 0.92598 0.91493 0.89251 0.89973 0.90254 0.91904 0.87150 0.87347 0.89607 0.89692 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.33 36.01 0.30 -0.77 16 2 C -0.07 -0.90 5.86 -104.57 -0.61 -1.51 16 3 C -0.13 -1.43 9.69 -39.63 -0.38 -1.81 16 4 C -0.12 -1.35 10.05 -39.63 -0.40 -1.75 16 5 C -0.11 -1.45 9.74 -39.54 -0.39 -1.83 16 6 C -0.08 -1.15 5.61 -104.21 -0.58 -1.73 16 7 C -0.09 -1.22 5.53 -104.20 -0.58 -1.79 16 8 C -0.06 -0.77 3.14 -90.74 -0.29 -1.06 16 9 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 10 C -0.15 -1.83 8.74 37.16 0.32 -1.51 16 11 C -0.11 -1.85 5.12 -25.33 -0.13 -1.98 16 12 C -0.03 -0.53 2.50 -90.75 -0.23 -0.76 16 13 H 0.10 1.71 7.99 -51.93 -0.41 1.30 16 14 C -0.13 -2.24 3.44 -27.88 -0.10 -2.33 16 15 C 0.46 10.62 5.60 -10.99 -0.06 10.56 16 16 O -0.54 -14.35 10.69 5.54 0.06 -14.30 16 17 N -0.44 -10.44 2.47 -107.72 -0.27 -10.70 16 18 C -0.35 -9.69 8.62 -14.93 -0.13 -9.82 16 19 H 0.09 2.73 6.89 -52.49 -0.36 2.36 16 20 C 0.09 2.77 4.84 -17.47 -0.08 2.69 16 21 N -0.87 -26.50 13.96 55.50 0.77 -25.73 16 22 Si 0.90 23.74 24.93 -169.99 -4.24 19.50 16 23 H -0.25 -6.74 6.01 56.52 0.34 -6.40 16 24 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.06 1.20 5.94 -67.92 -0.40 0.80 16 27 C -0.18 -3.06 9.85 -26.68 -0.26 -3.32 16 28 C -0.20 -3.45 10.23 -26.69 -0.27 -3.72 16 29 H 0.07 0.59 7.98 -51.93 -0.41 0.18 16 30 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.64 6.32 -51.92 -0.33 0.31 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.36 7.82 -52.49 -0.41 0.95 16 35 H 0.06 0.63 4.89 -51.93 -0.25 0.38 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 38 H 0.07 1.22 7.64 -51.93 -0.40 0.82 16 39 H 0.09 1.75 7.14 -51.93 -0.37 1.38 16 40 H 0.08 1.26 7.55 -51.93 -0.39 0.87 16 41 H 0.08 1.33 7.88 -51.93 -0.41 0.93 16 42 H 0.27 7.84 8.31 -40.82 -0.34 7.50 16 43 H 0.11 1.73 6.87 -51.93 -0.36 1.37 16 44 H 0.11 2.14 6.49 -51.93 -0.34 1.81 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -32.44 361.90 -9.93 -42.37 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.44 Total: 5.04 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -4.27 Total: -21.64 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.51 Total: -36.43 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.06 Total: -14.30 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.24 Total: 19.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.44 -9.93 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489897959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.467 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds