Wall clock time and date at job start Fri Apr 10 2020 22:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38398 * 119.91411 * 2 1 4 4 C 1.38397 * 120.34789 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.92157 * 180.02562 * 4 3 2 6 6 C 1.37895 * 120.16866 * 0.02562 * 4 3 2 7 7 C 1.39837 * 119.82369 * 359.97438 * 6 4 3 8 8 C 1.47212 * 120.16519 * 179.97438 * 7 6 4 9 9 C 1.34806 * 119.99644 * 136.38959 * 8 7 6 10 10 C 1.46427 * 120.00267 * 349.03198 * 9 8 7 11 11 O 1.21698 * 119.99774 * 353.21542 * 10 9 8 12 12 N 1.34773 * 119.99899 * 173.22047 * 10 9 8 13 13 C 1.46505 * 119.99858 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.01553 * 325.70552 * 13 12 10 15 15 C 1.53882 * 110.03166 * 87.09045 * 13 12 10 16 16 C 1.54267 * 106.59636 * 119.33400 * 15 13 12 17 17 C 1.54892 * 104.19623 * 23.61110 * 16 15 13 18 18 H 1.09002 * 110.75436 * 80.55562 * 17 16 15 19 19 C 1.50694 * 110.75413 * 203.74229 * 17 16 15 20 20 H 1.08006 * 120.00543 * 118.54770 * 19 17 16 21 21 C 1.37886 * 120.00221 * 298.54638 * 19 17 16 22 22 N 1.31514 * 119.99806 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00189 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47150 * 59.99494 * 23 21 19 25 25 H 1.48494 * 109.47074 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46958 * 299.99755 * 23 21 19 27 27 C 1.54263 * 110.07361 * 204.28150 * 13 12 10 28 28 C 1.37894 * 119.91433 * 180.28300 * 2 1 3 29 29 H 1.09002 * 109.46903 * 89.99940 * 1 2 3 30 30 H 1.09003 * 109.47228 * 209.99897 * 1 2 3 31 31 H 1.08997 * 109.47068 * 329.99913 * 1 2 3 32 32 H 1.08003 * 119.83106 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46779 * 270.02707 * 5 4 3 34 34 H 1.09005 * 109.46650 * 30.01791 * 5 4 3 35 35 H 1.08998 * 109.47328 * 150.01927 * 5 4 3 36 36 H 1.07998 * 120.08914 * 180.02562 * 6 4 3 37 37 H 1.08002 * 120.00278 * 316.38114 * 8 7 6 38 38 H 1.08002 * 120.00045 * 169.03057 * 9 8 7 39 39 H 0.97001 * 120.00229 * 359.97438 * 12 10 9 40 40 H 1.09000 * 110.02979 * 238.61786 * 15 13 12 41 41 H 1.09001 * 110.03103 * 0.02562 * 15 13 12 42 42 H 1.08998 * 110.48285 * 142.28892 * 16 15 13 43 43 H 1.08999 * 110.48622 * 264.92853 * 16 15 13 44 44 H 0.96995 * 120.00273 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.48642 * 335.76073 * 27 13 12 46 46 H 1.09001 * 110.48501 * 98.40782 * 27 13 12 47 47 H 1.08000 * 120.08521 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1996 0.0000 4 6 3.5812 1.2101 0.0005 5 6 4.3230 2.5219 0.0011 6 6 4.2832 0.0232 0.0005 7 6 3.5930 -1.1930 0.0005 8 6 4.3349 -2.4645 0.0000 9 6 3.9447 -3.4728 0.8052 10 6 2.9442 -3.2326 1.8470 11 8 2.5559 -2.1006 2.0683 12 7 2.4534 -4.2650 2.5608 13 6 1.4527 -4.0246 3.6036 14 1 1.6413 -3.0664 4.0877 15 6 0.0407 -4.0372 2.9920 16 6 -0.7293 -5.1804 3.6848 17 6 0.0067 -5.3710 5.0343 18 1 -0.3159 -4.6235 5.7591 19 6 -0.2132 -6.7619 5.5708 20 1 0.6279 -7.4232 5.7181 21 6 -1.4883 -7.1905 5.8737 22 7 -2.5126 -6.3855 5.6939 23 14 -1.7608 -8.9144 6.5394 24 1 -1.0156 -9.0765 7.8136 25 1 -3.2101 -9.1279 6.7822 26 1 -1.2732 -9.9095 5.5508 27 6 1.4914 -5.1605 4.6466 28 6 2.1947 -1.1952 -0.0059 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6531 2.1325 -0.0004 33 1 4.5018 2.8386 -1.0264 34 1 3.7270 3.2760 0.5152 35 1 5.2765 2.3999 0.5150 36 1 5.3631 0.0329 0.0014 37 1 5.1916 -2.5896 -0.6456 38 1 4.3700 -4.4579 0.6819 39 1 2.7626 -5.1673 2.3842 40 1 -0.4559 -3.0852 3.1796 41 1 0.0999 -4.2227 1.9196 42 1 -1.7673 -4.8938 3.8536 43 1 -0.6763 -6.0918 3.0893 44 1 -3.4095 -6.6868 5.9073 45 1 1.9031 -6.0687 4.2064 46 1 2.0740 -4.8594 5.5172 47 1 1.6547 -2.1305 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493067076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:22 Heat of formation + Delta-G solvation = -27.489715 kcal Electronic energy + Delta-G solvation = -25617.527171 eV Core-core repulsion = 22149.871459 eV Total energy + Delta-G solvation = -3467.655712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20789 -40.05999 -38.64422 -35.42806 -34.94796 -34.34144 -33.78471 -31.31621 -29.97833 -28.79416 -28.07906 -27.48685 -26.02516 -24.66741 -22.43552 -21.60585 -21.38961 -20.85836 -19.92385 -18.48886 -18.08329 -17.19975 -16.87530 -16.62519 -16.48397 -16.11184 -15.52629 -15.31506 -14.95226 -14.65871 -14.48329 -14.29153 -14.01307 -13.98055 -13.76755 -13.62004 -13.48691 -13.33863 -13.02680 -12.83518 -12.77528 -12.58536 -12.50321 -12.39528 -12.09690 -11.89002 -11.86813 -11.67092 -11.39460 -11.09786 -10.83290 -10.77252 -10.63038 -10.45991 -9.92310 -9.29004 -8.92790 -8.09995 -6.20805 -0.15531 0.60311 0.99855 1.43423 1.44418 1.51942 2.38523 2.43257 2.46725 2.94427 3.20568 3.77890 3.86073 3.95803 3.97544 4.03462 4.10816 4.19685 4.26581 4.44511 4.53541 4.56555 4.62513 4.68436 4.71521 4.77636 4.78317 4.87876 4.90904 4.96006 5.02537 5.05527 5.07293 5.14734 5.17522 5.23709 5.31209 5.36115 5.40250 5.42619 5.65551 5.68409 5.71619 5.74510 5.81816 5.93293 5.98927 6.22461 6.36736 6.74421 6.89710 7.41881 7.47080 8.98265 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025308 B = 0.002733 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.092628 B =10243.276343 C =10864.745826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.106 4.106 6 C -0.116 4.116 7 C -0.079 4.079 8 C -0.021 4.021 9 C -0.213 4.213 10 C 0.524 3.476 11 O -0.565 6.565 12 N -0.707 5.707 13 C 0.154 3.846 14 H 0.065 0.935 15 C -0.119 4.119 16 C -0.088 4.088 17 C 0.041 3.959 18 H -0.003 1.003 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.268 1.268 27 C -0.107 4.107 28 C -0.058 4.058 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.411 0.589 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.259 0.741 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.425 11.318 -15.682 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.163 4.163 6 C -0.134 4.134 7 C -0.079 4.079 8 C -0.040 4.040 9 C -0.234 4.234 10 C 0.314 3.686 11 O -0.446 6.446 12 N -0.358 5.358 13 C 0.049 3.951 14 H 0.083 0.917 15 C -0.158 4.158 16 C -0.127 4.127 17 C 0.022 3.978 18 H 0.015 0.985 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.188 4.188 22 N -0.560 5.560 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.193 1.193 27 C -0.145 4.145 28 C -0.077 4.077 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.186 0.814 39 H 0.247 0.753 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.950 12.109 -15.479 24.693 hybrid contribution -0.876 -1.395 0.776 1.820 sum 14.074 10.714 -14.704 23.002 Atomic orbital electron populations 1.20730 0.90875 1.02368 1.02515 1.19982 0.96702 0.93486 1.01309 1.21150 0.94205 0.97385 1.01529 1.20084 0.93758 0.96449 1.00522 1.20768 0.99866 0.92625 1.03032 1.21301 1.00199 0.90896 1.00983 1.19165 0.93082 0.94242 1.01445 1.22746 0.96193 0.89907 0.95194 1.23188 1.00765 1.01864 0.97554 1.19161 0.81875 0.84520 0.83020 1.90884 1.61546 1.23160 1.69044 1.46143 1.42220 1.10698 1.36693 1.21373 0.87210 0.98607 0.87891 0.91702 1.22475 0.95635 0.98455 0.99223 1.22067 0.98311 0.95328 0.96982 1.19519 0.90718 0.94887 0.92689 0.98466 1.21456 0.92814 0.99525 1.43023 0.92268 1.25795 0.96131 1.01019 0.95887 1.70097 0.99141 1.37396 1.49349 0.85669 0.76734 0.80492 0.79102 1.19644 1.21425 1.19319 1.22554 0.98348 0.96748 0.96831 1.20908 0.93554 0.96718 0.96494 0.90156 0.93291 0.91008 0.85214 0.90052 0.91354 0.90904 0.84123 0.80834 0.81441 0.75250 0.93552 0.92121 0.94447 0.94326 0.93192 0.90685 0.92352 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 10.01 71.24 0.71 -1.94 16 2 C -0.11 -3.18 5.87 -19.91 -0.12 -3.30 16 3 C -0.12 -3.04 9.34 22.35 0.21 -2.83 16 4 C -0.11 -2.38 5.87 -19.91 -0.12 -2.50 16 5 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 6 C -0.12 -2.57 9.44 22.58 0.21 -2.35 16 7 C -0.08 -1.97 4.53 -20.15 -0.09 -2.06 16 8 C -0.02 -0.39 9.81 23.84 0.23 -0.16 16 9 C -0.21 -4.23 9.91 23.62 0.23 -4.00 16 10 C 0.52 15.22 6.79 86.38 0.59 15.80 16 11 O -0.57 -20.64 11.82 -4.34 -0.05 -20.69 16 12 N -0.71 -20.27 4.98 -443.31 -2.21 -22.48 16 13 C 0.15 5.60 3.23 45.72 0.15 5.74 16 14 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 15 C -0.12 -4.72 6.59 31.32 0.21 -4.52 16 16 C -0.09 -4.20 5.57 31.67 0.18 -4.02 16 17 C 0.04 2.03 2.82 -10.25 -0.03 2.00 16 18 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 19 C -0.53 -28.66 8.54 25.60 0.22 -28.44 16 20 H 0.06 3.07 7.78 -2.91 -0.02 3.05 16 21 C 0.01 0.57 5.33 84.66 0.45 1.03 16 22 N -0.92 -53.84 12.02 21.45 0.26 -53.59 16 23 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C -0.11 -4.18 5.94 31.67 0.19 -3.99 16 28 C -0.06 -1.70 6.25 22.57 0.14 -1.55 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.35 8.08 -2.39 -0.02 1.34 16 31 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.95 8.08 -2.38 -0.02 0.93 16 35 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 36 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.41 9.42 8.33 -92.71 -0.77 8.64 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 2.24 7.92 -2.39 -0.02 2.22 16 42 H 0.04 1.98 7.37 -2.39 -0.02 1.96 16 43 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 44 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.07 2.72 7.63 -2.39 -0.02 2.70 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.09 2.97 7.04 -2.91 -0.02 2.95 16 Total: -1.00 -68.76 380.84 4.28 -64.48 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.17 Total: 25.01 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 4.08 Total: -37.97 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.95 Total: -76.07 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.69 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.76 4.28 -64.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493067076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.993 kcal (2) G-P(sol) polarization free energy of solvation -68.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds