Wall clock time and date at job start Fri Apr 10 2020 22:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37906 * 120.08769 * 2 1 4 4 C 1.38379 * 120.17117 * 179.74991 * 3 2 1 5 5 C 1.38426 * 120.34145 * 0.54850 * 4 3 2 6 6 C 1.37866 * 120.17547 * 359.70249 * 5 4 3 7 7 C 1.39822 * 120.08442 * 180.27036 * 2 1 3 8 8 C 1.47210 * 120.16909 * 0.02562 * 7 2 1 9 9 C 1.34805 * 119.99760 * 179.97438 * 8 7 2 10 10 C 1.46425 * 120.00173 * 179.97438 * 9 8 7 11 11 O 1.21703 * 119.99943 * 355.02771 * 10 9 8 12 12 N 1.34773 * 120.00283 * 175.02337 * 10 9 8 13 13 C 1.46926 * 120.63011 * 184.96379 * 12 10 9 14 14 C 1.52761 * 109.00713 * 233.58174 * 13 12 10 15 15 C 1.53050 * 109.38170 * 305.58881 * 14 13 12 16 16 C 1.52997 * 109.44633 * 181.25329 * 15 14 13 17 17 C 1.50704 * 109.47411 * 64.93970 * 16 15 14 18 18 H 1.07994 * 120.00007 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00339 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47061 * 59.99971 * 21 19 17 23 23 H 1.48505 * 109.47019 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46951 * 299.99700 * 21 19 17 25 25 C 1.53032 * 109.53821 * 61.24062 * 15 14 13 26 26 C 1.46923 * 120.63094 * 5.23608 * 12 10 9 27 27 H 1.08998 * 109.46852 * 269.72556 * 1 2 3 28 28 H 1.08999 * 109.47154 * 149.72573 * 1 2 3 29 29 H 1.08997 * 109.47019 * 29.72807 * 1 2 3 30 30 H 1.08006 * 119.91428 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.83104 * 180.29695 * 4 3 2 32 32 H 1.08001 * 119.91124 * 179.72750 * 5 4 3 33 33 H 1.07998 * 120.09384 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.00043 * 359.97438 * 8 7 2 35 35 H 1.08001 * 120.00197 * 0.02562 * 9 8 7 36 36 H 1.08994 * 109.58944 * 353.41373 * 13 12 10 37 37 H 1.09003 * 109.58991 * 113.84538 * 13 12 10 38 38 H 1.08997 * 109.56697 * 185.55578 * 14 13 12 39 39 H 1.08999 * 109.36196 * 65.49439 * 14 13 12 40 40 H 1.08998 * 109.45892 * 301.21791 * 15 14 13 41 41 H 1.08997 * 109.47078 * 184.93986 * 16 15 14 42 42 H 1.08997 * 109.47319 * 304.93921 * 16 15 14 43 43 H 0.97002 * 120.00329 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.49739 * 178.68222 * 25 15 14 45 45 H 1.09000 * 109.50456 * 58.58373 * 25 15 14 46 46 H 1.09001 * 109.58967 * 246.16006 * 26 12 10 47 47 H 1.09002 * 109.58639 * 6.44758 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1953 0.0052 5 6 4.2832 0.0017 -0.0010 6 6 3.6065 -1.1995 -0.0062 7 6 2.2080 -1.2099 -0.0057 8 6 1.4775 -2.4880 -0.0123 9 6 2.1568 -3.6524 -0.0183 10 6 1.4304 -4.9237 -0.0243 11 8 0.2168 -4.9316 0.0675 12 7 2.1056 -6.0852 -0.1316 13 6 1.3864 -7.3611 -0.2482 14 6 1.8916 -8.3173 0.8307 15 6 3.4135 -8.4414 0.7273 16 6 3.9178 -9.4229 1.7871 17 6 3.3829 -10.8004 1.4912 18 1 2.7466 -10.9598 0.6333 19 6 3.7050 -11.8570 2.3162 20 7 4.4795 -11.6628 3.3613 21 14 3.0415 -13.5643 1.9498 22 1 3.5095 -14.0001 0.6096 23 1 3.5311 -14.5169 2.9785 24 1 1.5569 -13.5331 1.9699 25 6 4.0554 -7.0710 0.9550 26 6 3.5747 -6.1001 -0.1281 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 -0.8875 -0.5181 29 1 -0.3633 0.8924 -0.5096 30 1 1.6584 2.1286 -0.0004 31 1 4.1180 2.1329 0.0100 32 1 5.3632 0.0114 -0.0013 33 1 4.1547 -2.1299 -0.0106 34 1 0.3976 -2.4927 -0.0123 35 1 3.2368 -3.6476 -0.0179 36 1 0.3181 -7.1921 -0.1135 37 1 1.5688 -7.7949 -1.2314 38 1 1.4364 -9.2979 0.6916 39 1 1.6243 -7.9276 1.8129 40 1 3.6815 -8.8077 -0.2637 41 1 5.0074 -9.4453 1.7724 42 1 3.5743 -9.1034 2.7710 43 1 4.7065 -12.4062 3.9416 44 1 5.1402 -7.1644 0.9045 45 1 3.7677 -6.6929 1.9361 46 1 3.9391 -6.4288 -1.1014 47 1 3.9498 -5.0987 0.0833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493553294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:41 Heat of formation + Delta-G solvation = -29.912782 kcal Electronic energy + Delta-G solvation = -24945.651526 eV Core-core repulsion = 21477.890742 eV Total energy + Delta-G solvation = -3467.760784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27937 -40.29352 -38.74163 -35.71632 -35.16768 -34.00565 -33.67158 -32.19360 -30.69771 -29.74949 -27.82184 -26.51928 -25.43969 -23.98711 -23.59054 -22.45450 -21.62351 -20.66086 -19.50597 -18.68345 -18.36358 -17.17343 -17.12840 -16.54301 -16.23044 -16.14794 -15.68054 -15.29403 -15.03144 -14.79249 -14.70302 -14.53694 -14.37907 -14.23387 -13.97439 -13.91463 -13.50239 -13.26525 -13.05646 -13.00908 -12.81805 -12.75364 -12.48124 -12.33897 -12.11364 -11.94035 -11.83903 -11.75067 -11.35204 -11.33243 -11.10483 -11.03944 -10.69850 -10.51427 -9.70931 -9.64503 -9.12727 -8.17004 -6.26087 -0.45232 0.47760 1.02466 1.40242 1.42479 1.49899 2.03350 2.26162 2.42042 2.93835 3.16407 3.45335 3.74519 3.87772 3.94099 3.99184 4.05615 4.07090 4.15182 4.23401 4.30161 4.41451 4.42977 4.53247 4.58802 4.68531 4.75369 4.77506 4.81621 4.88413 4.89259 4.97459 5.03965 5.09805 5.13160 5.22431 5.29326 5.32205 5.34806 5.38151 5.55450 5.58175 5.59636 5.62589 5.72001 5.80916 5.90067 6.06920 6.29492 6.44441 6.90360 7.12860 7.42276 8.94510 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.002284 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.412703 B =12253.776273 C =12899.396913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.133 4.133 4 C -0.106 4.106 5 C -0.135 4.135 6 C -0.105 4.105 7 C -0.098 4.098 8 C -0.017 4.017 9 C -0.218 4.218 10 C 0.540 3.460 11 O -0.596 6.596 12 N -0.603 5.603 13 C 0.117 3.883 14 C -0.110 4.110 15 C -0.074 4.074 16 C 0.033 3.967 17 C -0.530 4.530 18 H 0.063 0.937 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.270 1.270 25 C -0.126 4.126 26 C 0.110 3.890 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.065 0.935 41 H -0.007 1.007 42 H -0.018 1.018 43 H 0.261 0.739 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 27.313 -10.049 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.073 4.073 3 C -0.151 4.151 4 C -0.124 4.124 5 C -0.153 4.153 6 C -0.123 4.123 7 C -0.098 4.098 8 C -0.036 4.036 9 C -0.238 4.238 10 C 0.333 3.667 11 O -0.480 6.480 12 N -0.333 5.333 13 C -0.005 4.005 14 C -0.149 4.149 15 C -0.092 4.092 16 C -0.004 4.004 17 C -0.568 4.568 18 H 0.081 0.919 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.195 1.195 25 C -0.164 4.164 26 C -0.012 4.012 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.175 0.825 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.012 0.988 42 H 0.001 0.999 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.603 27.181 -9.874 28.964 hybrid contribution -0.249 -1.537 0.519 1.641 sum -1.852 25.645 -9.355 27.360 Atomic orbital electron populations 1.20944 0.90279 1.03697 1.03154 1.20378 0.96912 0.92527 0.97470 1.21293 0.94844 0.97775 1.01158 1.21674 0.94299 0.99245 0.97179 1.21419 1.01353 0.92028 1.00524 1.21675 0.92921 0.99735 0.97964 1.18962 0.93821 0.92039 1.05005 1.22455 1.00058 0.91044 0.90086 1.23022 1.01569 0.90656 1.08515 1.18828 0.86848 0.85319 0.75729 1.90747 1.15833 1.88177 1.53221 1.48132 1.08193 1.05987 1.71037 1.21504 0.96922 0.82863 0.99243 1.21676 0.96748 0.98854 0.97577 1.21047 0.94186 0.94631 0.99352 1.19011 0.94586 0.93488 0.93289 1.21651 1.29862 0.94471 1.10769 0.91924 1.25942 0.95614 1.03418 0.95035 1.70092 1.38095 1.32926 1.16490 0.85600 0.78856 0.79109 0.78096 1.19023 1.21232 1.19504 1.21960 1.01108 0.94750 0.98587 1.22045 0.77585 1.01555 0.99971 0.90440 0.91708 0.89543 0.83778 0.83459 0.83605 0.84275 0.85662 0.82461 0.90617 0.89972 0.91352 0.94456 0.91648 0.98839 0.99937 0.93013 0.89737 0.93272 0.89258 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.52 71.24 0.68 -1.01 16 2 C -0.07 -1.18 5.92 -19.56 -0.12 -1.30 16 3 C -0.13 -1.70 9.69 22.22 0.22 -1.49 16 4 C -0.11 -1.21 10.04 22.35 0.22 -0.99 16 5 C -0.14 -1.70 10.03 22.23 0.22 -1.47 16 6 C -0.11 -1.63 9.41 22.57 0.21 -1.42 16 7 C -0.10 -1.82 5.87 -20.15 -0.12 -1.94 16 8 C -0.02 -0.36 8.89 23.84 0.21 -0.15 16 9 C -0.22 -4.91 8.73 23.61 0.21 -4.71 16 10 C 0.54 16.43 7.62 86.38 0.66 17.08 16 11 O -0.60 -22.55 15.66 -4.36 -0.07 -22.61 16 12 N -0.60 -17.43 2.98 -824.74 -2.46 -19.88 16 13 C 0.12 3.72 6.41 86.22 0.55 4.28 16 14 C -0.11 -4.16 5.17 30.53 0.16 -4.00 16 15 C -0.07 -2.84 2.10 -10.77 -0.02 -2.87 16 16 C 0.03 1.71 4.45 29.85 0.13 1.84 16 17 C -0.53 -29.44 8.39 25.60 0.21 -29.22 16 18 H 0.06 3.32 7.05 -2.91 -0.02 3.29 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 21 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C -0.13 -3.82 5.36 30.67 0.16 -3.66 16 26 C 0.11 2.53 6.32 86.37 0.55 3.08 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.99 6.33 -2.39 -0.02 0.97 16 29 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 31 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.14 1.70 6.17 -2.91 -0.02 1.68 16 34 H 0.13 2.97 5.83 -2.91 -0.02 2.95 16 35 H 0.16 2.57 3.91 -2.91 -0.01 2.56 16 36 H 0.08 2.58 6.99 -2.39 -0.02 2.56 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.76 6.91 -2.39 -0.02 2.74 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.11 1.86 5.37 -2.39 -0.01 1.85 16 Total: -1.00 -72.29 374.56 5.35 -66.95 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.96 Total: 13.60 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 4.60 Total: -27.64 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.17 Total: -76.69 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.07 Total: -22.61 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -72.29 5.35 -66.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.034 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds