Wall clock time and date at job start Fri Apr 10 2020 22:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37910 * 120.08544 * 2 1 4 4 C 1.38381 * 120.16986 * 179.72521 * 3 2 1 5 5 C 1.38428 * 120.34489 * 0.54994 * 4 3 2 6 6 C 1.37870 * 120.16642 * 359.73098 * 5 4 3 7 7 C 1.39816 * 120.08936 * 180.27814 * 2 1 3 8 8 C 1.47217 * 120.16635 * 359.97393 * 7 2 1 9 9 C 1.34813 * 119.99497 * 130.67133 * 8 7 2 10 10 C 1.46427 * 120.00041 * 349.89069 * 9 8 7 11 11 O 1.21699 * 119.99984 * 353.11244 * 10 9 8 12 12 N 1.34776 * 119.99687 * 173.11008 * 10 9 8 13 13 C 1.46927 * 120.63075 * 354.42139 * 12 10 9 14 14 C 1.53630 * 108.54342 * 126.36968 * 13 12 10 15 15 C 1.53040 * 109.24262 * 54.85105 * 14 13 12 16 16 C 1.52998 * 109.44551 * 178.49908 * 15 14 13 17 17 C 1.50700 * 109.47490 * 295.05947 * 16 15 14 18 18 H 1.08003 * 119.99810 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47502 * 89.99985 * 21 19 17 23 23 H 1.48501 * 109.47169 * 210.00520 * 21 19 17 24 24 H 1.48501 * 109.47244 * 329.99793 * 21 19 17 25 25 C 1.53035 * 109.54027 * 298.51329 * 15 14 13 26 26 C 1.46925 * 120.63028 * 174.69844 * 12 10 9 27 27 H 1.09005 * 109.46908 * 269.72175 * 1 2 3 28 28 H 1.09006 * 109.47095 * 149.72623 * 1 2 3 29 29 H 1.09000 * 109.47444 * 29.72615 * 1 2 3 30 30 H 1.08003 * 119.91747 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.82729 * 180.27902 * 4 3 2 32 32 H 1.07997 * 119.91562 * 179.74708 * 5 4 3 33 33 H 1.08004 * 120.08109 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.00067 * 310.67114 * 8 7 2 35 35 H 1.07997 * 119.99527 * 169.89062 * 9 8 7 36 36 H 1.09001 * 109.58565 * 246.19400 * 13 12 10 37 37 H 1.08994 * 109.59062 * 6.62321 * 13 12 10 38 38 H 1.09002 * 109.62715 * 294.86214 * 14 13 12 39 39 H 1.08996 * 109.43091 * 174.72381 * 14 13 12 40 40 H 1.09002 * 109.45570 * 58.53487 * 15 14 13 41 41 H 1.08994 * 109.47366 * 55.06746 * 16 15 14 42 42 H 1.09007 * 109.46899 * 175.06578 * 16 15 14 43 43 H 0.97005 * 119.99803 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49949 * 301.41533 * 25 15 14 45 45 H 1.09001 * 109.49667 * 181.31383 * 25 15 14 46 46 H 1.09007 * 109.58445 * 353.37324 * 26 12 10 47 47 H 1.08999 * 109.59128 * 113.65663 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5821 1.1954 0.0057 5 6 4.2833 0.0018 0.0001 6 6 3.6064 -1.1993 -0.0058 7 6 2.2080 -1.2097 -0.0059 8 6 1.4776 -2.4879 -0.0115 9 6 1.8035 -3.4465 -0.9016 10 6 2.7233 -3.1435 -2.0000 11 8 3.0951 -1.9995 -2.1842 12 7 3.1581 -4.1317 -2.8067 13 6 2.8170 -5.5328 -2.5250 14 6 2.1766 -6.1419 -3.7816 15 6 3.1203 -5.9520 -4.9713 16 6 2.5036 -6.5901 -6.2176 17 6 2.4022 -8.0808 -6.0211 18 1 2.7432 -8.5283 -5.0992 19 6 1.8742 -8.8732 -7.0181 20 7 1.4594 -8.3283 -8.1409 21 14 1.7479 -10.7209 -6.7742 22 1 0.4368 -11.0507 -6.1599 23 1 1.8646 -11.4028 -8.0882 24 1 2.8423 -11.1782 -5.8805 25 6 3.3383 -4.4576 -5.2183 26 6 3.9873 -3.8289 -3.9812 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3633 -0.8876 -0.5181 29 1 -0.3634 0.8924 -0.5096 30 1 1.6584 2.1287 0.0004 31 1 4.1179 2.1331 0.0103 32 1 5.3632 0.0115 0.0005 33 1 4.1548 -2.1297 -0.0098 34 1 0.6807 -2.6576 0.6974 35 1 1.3862 -4.4379 -0.8046 36 1 3.7214 -6.0846 -2.2686 37 1 2.1116 -5.5775 -1.6954 38 1 1.2282 -5.6452 -3.9867 39 1 2.0032 -7.2059 -3.6209 40 1 4.0770 -6.4278 -4.7553 41 1 1.5086 -6.1768 -6.3829 42 1 3.1326 -6.3796 -7.0827 43 1 1.0883 -8.8860 -8.8425 44 1 2.3790 -3.9767 -5.4099 45 1 3.9919 -4.3228 -6.0802 46 1 4.0542 -2.7489 -4.1126 47 1 4.9859 -4.2423 -3.8400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493553715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:44 Heat of formation + Delta-G solvation = -3.320188 kcal Electronic energy + Delta-G solvation = -25669.433740 eV Core-core repulsion = 22202.826097 eV Total energy + Delta-G solvation = -3466.607643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28919 -39.11734 -37.27859 -34.07520 -33.97801 -32.66193 -32.16421 -30.84411 -29.69933 -28.02783 -26.90951 -25.09567 -23.82922 -22.80794 -22.15626 -21.35694 -20.68455 -19.38274 -18.28262 -17.47019 -16.35292 -16.24439 -15.56734 -15.42797 -15.01933 -14.61924 -14.47355 -14.23812 -13.78568 -13.71152 -13.37619 -13.31239 -13.14094 -12.92629 -12.73465 -12.53731 -12.40360 -12.19385 -11.90478 -11.78850 -11.19446 -11.15074 -11.04461 -10.99230 -10.79597 -10.71089 -10.47704 -10.14786 -9.97463 -9.72956 -9.53665 -9.25966 -8.98324 -8.65201 -8.37460 -8.23772 -8.17501 -6.01711 -4.03901 0.74477 1.47327 1.80529 3.22359 3.29031 3.36107 3.38214 3.41055 3.82643 4.43292 4.58500 4.63716 4.80181 4.86650 5.02375 5.05629 5.21541 5.30919 5.33274 5.37977 5.43276 5.48697 5.50109 5.51900 5.60849 5.68466 5.72044 5.78027 5.93364 5.96714 6.01890 6.08137 6.10767 6.16300 6.37734 6.40202 6.49486 6.52827 6.55426 6.61912 6.72601 6.96037 6.98722 7.03374 7.09730 7.63132 7.65438 7.80004 7.98079 8.37506 8.40240 9.02688 9.59982 11.09560 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.002575 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.714291 B =10870.082055 C =11126.544571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.044 4.044 7 C -0.059 4.059 8 C -0.033 4.033 9 C -0.205 4.205 10 C 0.537 3.463 11 O -0.536 6.536 12 N -0.600 5.600 13 C 0.101 3.899 14 C -0.119 4.119 15 C -0.080 4.080 16 C 0.027 3.973 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.129 4.129 26 C 0.114 3.886 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 14.645 18.845 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.150 4.150 4 C -0.129 4.129 5 C -0.151 4.151 6 C -0.063 4.063 7 C -0.059 4.059 8 C -0.053 4.053 9 C -0.225 4.225 10 C 0.327 3.673 11 O -0.415 6.415 12 N -0.333 5.333 13 C -0.022 4.022 14 C -0.157 4.157 15 C -0.099 4.099 16 C -0.010 4.010 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.167 4.167 26 C -0.008 4.008 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.382 15.184 18.544 24.007 hybrid contribution -0.149 -1.322 -0.219 1.348 sum 1.233 13.862 18.324 23.010 Atomic orbital electron populations 1.20798 0.91440 1.02913 1.01996 1.19906 0.95537 0.92324 0.99372 1.20805 0.94232 0.97065 1.02875 1.21106 0.94210 0.97782 0.99833 1.20901 0.99502 0.92490 1.02248 1.20983 0.92740 0.97637 0.94891 1.18708 0.93220 0.92088 1.01869 1.22334 0.95395 0.91487 0.96038 1.23216 1.02215 1.00248 0.96829 1.18416 0.80959 0.84893 0.83040 1.90867 1.58183 1.20112 1.72360 1.48125 1.51313 1.07068 1.26745 1.22101 1.00136 0.80762 0.99155 1.21987 0.98758 1.01610 0.93377 1.21183 0.98458 0.92825 0.97427 1.19124 0.95755 0.94915 0.91160 1.21233 1.40544 0.92341 1.01333 0.92606 1.25027 0.95657 0.98505 0.95311 1.69966 1.42152 1.35387 1.05964 0.86645 0.78370 0.85825 0.77454 1.20726 1.21298 1.19914 1.22025 1.00870 0.97618 0.96209 1.21633 0.93156 1.01328 0.84717 0.91267 0.91514 0.91558 0.86496 0.86614 0.86573 0.87078 0.84860 0.84579 0.91507 0.90267 0.92246 0.89779 0.92387 0.96669 0.96616 0.93036 0.92145 0.91204 0.89757 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.62 36.01 0.35 -0.67 16 2 C -0.07 -0.82 5.92 -104.15 -0.62 -1.44 16 3 C -0.13 -1.45 9.69 -39.65 -0.38 -1.83 16 4 C -0.11 -1.23 10.04 -39.46 -0.40 -1.62 16 5 C -0.13 -1.59 10.03 -39.65 -0.40 -1.99 16 6 C -0.04 -0.57 6.78 -39.11 -0.27 -0.84 16 7 C -0.06 -0.73 4.31 -105.06 -0.45 -1.18 16 8 C -0.03 -0.35 8.26 -37.15 -0.31 -0.65 16 9 C -0.20 -2.37 9.24 -37.50 -0.35 -2.71 16 10 C 0.54 7.93 6.88 -12.96 -0.09 7.84 16 11 O -0.54 -9.23 11.88 5.19 0.06 -9.17 16 12 N -0.60 -8.78 2.97 -174.13 -0.52 -9.30 16 13 C 0.10 1.35 6.38 -3.48 -0.02 1.33 16 14 C -0.12 -2.01 5.21 -26.38 -0.14 -2.15 16 15 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 17 C -0.52 -13.89 8.39 -34.44 -0.29 -14.18 16 18 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 21 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 C -0.13 -2.20 5.36 -26.61 -0.14 -2.34 16 26 C 0.11 1.73 6.41 -3.71 -0.02 1.70 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.61 7.09 -51.93 -0.37 0.24 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.11 1.42 7.52 -52.48 -0.39 1.03 16 34 H 0.13 1.00 8.05 -52.49 -0.42 0.58 16 35 H 0.14 1.27 5.92 -52.49 -0.31 0.96 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.86 5.32 -51.93 -0.28 0.58 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.08 1.33 7.04 -51.93 -0.37 0.96 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -31.79 372.27 -10.56 -42.35 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.50 Total: 0.65 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.94 Total: -20.45 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.22 Total: -35.09 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.06 Total: -9.17 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.79 -10.56 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.028 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds