Wall clock time and date at job start Fri Apr 10 2020 22:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37910 * 120.08544 * 2 1 4 4 C 1.38381 * 120.16986 * 179.72521 * 3 2 1 5 5 C 1.38428 * 120.34489 * 0.54994 * 4 3 2 6 6 C 1.37870 * 120.16642 * 359.73098 * 5 4 3 7 7 C 1.39816 * 120.08936 * 180.27814 * 2 1 3 8 8 C 1.47217 * 120.16635 * 359.97393 * 7 2 1 9 9 C 1.34813 * 119.99497 * 130.67133 * 8 7 2 10 10 C 1.46427 * 120.00041 * 349.89069 * 9 8 7 11 11 O 1.21699 * 119.99984 * 353.11244 * 10 9 8 12 12 N 1.34776 * 119.99687 * 173.11008 * 10 9 8 13 13 C 1.46927 * 120.63075 * 354.42139 * 12 10 9 14 14 C 1.53630 * 108.54342 * 126.36968 * 13 12 10 15 15 C 1.53040 * 109.24262 * 54.85105 * 14 13 12 16 16 C 1.52998 * 109.44551 * 178.49908 * 15 14 13 17 17 C 1.50700 * 109.47490 * 295.05947 * 16 15 14 18 18 H 1.08003 * 119.99810 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47502 * 89.99985 * 21 19 17 23 23 H 1.48501 * 109.47169 * 210.00520 * 21 19 17 24 24 H 1.48501 * 109.47244 * 329.99793 * 21 19 17 25 25 C 1.53035 * 109.54027 * 298.51329 * 15 14 13 26 26 C 1.46925 * 120.63028 * 174.69844 * 12 10 9 27 27 H 1.09005 * 109.46908 * 269.72175 * 1 2 3 28 28 H 1.09006 * 109.47095 * 149.72623 * 1 2 3 29 29 H 1.09000 * 109.47444 * 29.72615 * 1 2 3 30 30 H 1.08003 * 119.91747 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.82729 * 180.27902 * 4 3 2 32 32 H 1.07997 * 119.91562 * 179.74708 * 5 4 3 33 33 H 1.08004 * 120.08109 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.00067 * 310.67114 * 8 7 2 35 35 H 1.07997 * 119.99527 * 169.89062 * 9 8 7 36 36 H 1.09001 * 109.58565 * 246.19400 * 13 12 10 37 37 H 1.08994 * 109.59062 * 6.62321 * 13 12 10 38 38 H 1.09002 * 109.62715 * 294.86214 * 14 13 12 39 39 H 1.08996 * 109.43091 * 174.72381 * 14 13 12 40 40 H 1.09002 * 109.45570 * 58.53487 * 15 14 13 41 41 H 1.08994 * 109.47366 * 55.06746 * 16 15 14 42 42 H 1.09007 * 109.46899 * 175.06578 * 16 15 14 43 43 H 0.97005 * 119.99803 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49949 * 301.41533 * 25 15 14 45 45 H 1.09001 * 109.49667 * 181.31383 * 25 15 14 46 46 H 1.09007 * 109.58445 * 353.37324 * 26 12 10 47 47 H 1.08999 * 109.59128 * 113.65663 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5821 1.1954 0.0057 5 6 4.2833 0.0018 0.0001 6 6 3.6064 -1.1993 -0.0058 7 6 2.2080 -1.2097 -0.0059 8 6 1.4776 -2.4879 -0.0115 9 6 1.8035 -3.4465 -0.9016 10 6 2.7233 -3.1435 -2.0000 11 8 3.0951 -1.9995 -2.1842 12 7 3.1581 -4.1317 -2.8067 13 6 2.8170 -5.5328 -2.5250 14 6 2.1766 -6.1419 -3.7816 15 6 3.1203 -5.9520 -4.9713 16 6 2.5036 -6.5901 -6.2176 17 6 2.4022 -8.0808 -6.0211 18 1 2.7432 -8.5283 -5.0992 19 6 1.8742 -8.8732 -7.0181 20 7 1.4594 -8.3283 -8.1409 21 14 1.7479 -10.7209 -6.7742 22 1 0.4368 -11.0507 -6.1599 23 1 1.8646 -11.4028 -8.0882 24 1 2.8423 -11.1782 -5.8805 25 6 3.3383 -4.4576 -5.2183 26 6 3.9873 -3.8289 -3.9812 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3633 -0.8876 -0.5181 29 1 -0.3634 0.8924 -0.5096 30 1 1.6584 2.1287 0.0004 31 1 4.1179 2.1331 0.0103 32 1 5.3632 0.0115 0.0005 33 1 4.1548 -2.1297 -0.0098 34 1 0.6807 -2.6576 0.6974 35 1 1.3862 -4.4379 -0.8046 36 1 3.7214 -6.0846 -2.2686 37 1 2.1116 -5.5775 -1.6954 38 1 1.2282 -5.6452 -3.9867 39 1 2.0032 -7.2059 -3.6209 40 1 4.0770 -6.4278 -4.7553 41 1 1.5086 -6.1768 -6.3829 42 1 3.1326 -6.3796 -7.0827 43 1 1.0883 -8.8860 -8.8425 44 1 2.3790 -3.9767 -5.4099 45 1 3.9919 -4.3228 -6.0802 46 1 4.0542 -2.7489 -4.1126 47 1 4.9859 -4.2423 -3.8400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493553715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:43 Heat of formation + Delta-G solvation = -18.757643 kcal Electronic energy + Delta-G solvation = -25670.103158 eV Core-core repulsion = 22202.826097 eV Total energy + Delta-G solvation = -3467.277061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36355 -40.07598 -38.57283 -35.66944 -34.93755 -33.98308 -33.45931 -32.10996 -30.65489 -29.70967 -27.69663 -26.58893 -25.06668 -24.09175 -23.47673 -22.35838 -21.81957 -20.75446 -19.35996 -18.53641 -18.37628 -17.26080 -16.57321 -16.49847 -16.35718 -16.06161 -15.52421 -15.36857 -15.10207 -14.79173 -14.49169 -14.47736 -14.26505 -14.15862 -13.92082 -13.84797 -13.44967 -13.28749 -13.11536 -12.96702 -12.75571 -12.68774 -12.47328 -12.31155 -12.11772 -11.96470 -11.86112 -11.74570 -11.36127 -11.14267 -10.85122 -10.81570 -10.58461 -10.50888 -9.61507 -9.35778 -9.06113 -8.15907 -6.25701 -0.12392 0.61112 0.93623 1.42254 1.43128 1.53764 2.11862 2.36889 2.43403 2.97193 3.17910 3.66140 3.76597 3.96814 4.02617 4.04361 4.07549 4.13567 4.21883 4.23481 4.36456 4.44753 4.47829 4.64176 4.68054 4.69033 4.78457 4.84667 4.84896 4.89330 4.96573 4.99136 5.07688 5.13758 5.21238 5.27489 5.32642 5.34166 5.37996 5.43675 5.55518 5.62585 5.67567 5.70686 5.77279 5.82684 5.89850 6.20910 6.29147 6.53484 6.91337 7.27149 7.43276 8.96228 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.002575 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.714291 B =10870.082055 C =11126.544571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.119 4.119 5 C -0.151 4.151 6 C -0.062 4.062 7 C -0.080 4.080 8 C -0.017 4.017 9 C -0.219 4.219 10 C 0.531 3.469 11 O -0.566 6.566 12 N -0.605 5.605 13 C 0.110 3.890 14 C -0.114 4.114 15 C -0.073 4.073 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.961 3.039 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.260 1.260 25 C -0.121 4.121 26 C 0.122 3.878 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.061 0.939 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.261 0.739 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 14.194 21.525 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.160 4.160 4 C -0.137 4.137 5 C -0.169 4.169 6 C -0.080 4.080 7 C -0.080 4.080 8 C -0.036 4.036 9 C -0.239 4.239 10 C 0.323 3.677 11 O -0.448 6.448 12 N -0.337 5.337 13 C -0.012 4.012 14 C -0.152 4.152 15 C -0.091 4.091 16 C -0.005 4.005 17 C -0.563 4.563 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.184 1.184 25 C -0.159 4.159 26 C 0.000 4.000 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.186 0.814 35 H 0.180 0.820 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.939 14.728 21.249 25.871 hybrid contribution 0.000 -1.063 -1.084 1.518 sum 0.939 13.665 20.164 24.376 Atomic orbital electron populations 1.20840 0.89599 1.03122 1.03379 1.20302 0.97058 0.92225 0.98756 1.21165 0.94479 0.97988 1.02400 1.21423 0.94664 0.98355 0.99239 1.21152 1.00278 0.92809 1.02651 1.21070 0.93400 0.97666 0.95846 1.19020 0.93306 0.93404 1.02313 1.22693 0.95035 0.90131 0.95780 1.23256 1.02384 1.01867 0.96417 1.18991 0.80821 0.84326 0.83556 1.90855 1.59304 1.21313 1.73315 1.48206 1.51279 1.07732 1.26498 1.22117 1.01342 0.79761 0.97950 1.21874 0.97829 1.01382 0.94115 1.21029 0.98640 0.93599 0.95859 1.19020 0.93790 0.94841 0.92804 1.21666 1.39724 0.93315 1.01615 0.91336 1.25991 0.95397 1.03810 0.94992 1.70121 1.43470 1.37329 1.07069 0.85497 0.78970 0.79474 0.77423 1.19812 1.21476 1.18371 1.21900 1.00283 0.96200 0.97527 1.21459 0.93753 1.00667 0.84148 0.89190 0.91740 0.90927 0.84437 0.84558 0.85660 0.87852 0.81377 0.81984 0.90010 0.86953 0.93545 0.90503 0.92009 0.99803 0.99812 0.93071 0.93753 0.91362 0.90506 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.62 71.24 0.69 -1.04 16 2 C -0.08 -1.78 5.92 -19.56 -0.12 -1.90 16 3 C -0.14 -2.93 9.69 22.23 0.22 -2.71 16 4 C -0.12 -2.51 10.04 22.35 0.22 -2.28 16 5 C -0.15 -3.56 10.03 22.23 0.22 -3.34 16 6 C -0.06 -1.57 6.78 22.57 0.15 -1.41 16 7 C -0.08 -1.88 4.31 -20.15 -0.09 -1.97 16 8 C -0.02 -0.32 8.26 23.84 0.20 -0.12 16 9 C -0.22 -4.51 9.24 23.62 0.22 -4.29 16 10 C 0.53 15.02 6.88 86.38 0.59 15.61 16 11 O -0.57 -19.36 11.88 -4.34 -0.05 -19.41 16 12 N -0.61 -16.85 2.97 -823.05 -2.44 -19.29 16 13 C 0.11 2.66 6.38 86.51 0.55 3.22 16 14 C -0.11 -3.74 5.21 30.82 0.16 -3.58 16 15 C -0.07 -2.81 2.10 -10.77 -0.02 -2.83 16 16 C 0.03 1.67 4.45 29.85 0.13 1.81 16 17 C -0.53 -28.52 8.39 25.60 0.21 -28.30 16 18 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 19 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 20 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16 21 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 C -0.12 -4.19 5.36 30.67 0.16 -4.03 16 26 C 0.12 3.65 6.41 86.36 0.55 4.21 16 27 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.06 1.01 7.09 -2.38 -0.02 0.99 16 29 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 30 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.10 2.66 7.52 -2.91 -0.02 2.64 16 34 H 0.17 1.85 8.05 -2.91 -0.02 1.83 16 35 H 0.16 2.38 5.92 -2.91 -0.02 2.36 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 2.01 5.32 -2.39 -0.01 1.99 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 2.64 6.91 -2.39 -0.02 2.62 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 43 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.08 2.43 7.04 -2.38 -0.02 2.42 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.97 372.27 5.28 -65.68 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.94 Total: 17.39 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 4.52 Total: -32.79 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.16 Total: -76.15 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.97 5.28 -65.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493553715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.925 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds