Wall clock time and date at job start Fri Apr 10 2020 22:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47125 * 299.99955 * 3 2 1 6 6 H 1.48502 * 109.46825 * 60.00343 * 3 2 1 7 7 C 1.40271 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 169.13903 * 7 2 1 9 9 C 1.40894 * 120.00239 * 349.13963 * 7 2 1 10 10 C 1.40705 * 120.32432 * 331.61406 * 9 7 2 11 11 C 1.37599 * 119.88240 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.56613 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67722 * 359.71782 * 12 11 10 14 14 C 1.39223 * 120.09174 * 0.55827 * 13 12 11 15 15 C 1.47436 * 120.28136 * 179.71777 * 14 13 12 16 16 O 1.21607 * 119.99509 * 130.58703 * 15 14 13 17 17 N 1.34774 * 120.00133 * 310.58261 * 15 14 13 18 18 C 1.46920 * 120.66346 * 354.60033 * 17 15 14 19 19 C 1.53194 * 108.86983 * 233.92272 * 18 17 15 20 20 C 1.53101 * 109.29759 * 305.04509 * 19 18 17 21 21 C 1.52678 * 109.56405 * 60.75629 * 20 19 18 22 22 C 1.53948 * 109.87205 * 178.44488 * 21 20 19 23 23 C 1.54963 * 104.12239 * 217.22642 * 22 21 20 24 24 C 1.54914 * 102.79060 * 37.67177 * 23 22 21 25 25 C 1.53578 * 110.02498 * 60.98401 * 21 20 19 26 26 C 1.47002 * 120.66282 * 174.60954 * 17 15 14 27 27 H 0.97000 * 119.99774 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.06060 * 359.97438 * 10 9 7 29 29 H 1.07991 * 119.71847 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.66097 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.95282 * 180.28301 * 13 12 11 32 32 H 1.08994 * 109.57685 * 114.10633 * 18 17 15 33 33 H 1.09003 * 109.66803 * 353.79413 * 18 17 15 34 34 H 1.09003 * 109.50132 * 185.09818 * 19 18 17 35 35 H 1.09000 * 109.50142 * 64.99056 * 19 18 17 36 36 H 1.09007 * 109.45499 * 300.73085 * 20 19 18 37 37 H 1.09004 * 109.44373 * 180.77790 * 20 19 18 38 38 H 1.08991 * 110.50041 * 335.88484 * 22 21 20 39 39 H 1.08996 * 110.49898 * 98.57022 * 22 21 20 40 40 H 1.08999 * 110.75383 * 279.34109 * 23 22 21 41 41 H 1.09002 * 110.74521 * 155.99423 * 23 22 21 42 42 H 1.09000 * 110.48565 * 203.54089 * 24 23 22 43 43 H 1.09002 * 110.59682 * 80.95912 * 24 23 22 44 44 H 1.09000 * 110.05951 * 238.42330 * 25 21 20 45 45 H 1.09002 * 110.05802 * 359.92114 * 25 21 20 46 46 H 1.09003 * 109.58575 * 7.18269 * 26 17 15 47 47 H 1.08992 * 109.59179 * 246.75259 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8815 2.3964 1.2126 7 6 2.0076 -1.2148 -0.0005 8 1 3.0732 -1.2231 -0.1768 9 6 1.3222 -2.4242 0.2288 10 6 0.1537 -2.4409 1.0125 11 6 -0.5089 -3.6271 1.2302 12 6 -0.0343 -4.8115 0.6832 13 6 1.1083 -4.8210 -0.0946 14 6 1.8038 -3.6378 -0.3280 15 6 3.0265 -3.6442 -1.1518 16 8 3.1547 -2.8410 -2.0558 17 7 4.0021 -4.5401 -0.9029 18 6 3.9165 -5.4383 0.2566 19 6 5.1964 -5.2987 1.0869 20 6 6.4112 -5.5545 0.1909 21 6 6.4395 -4.5267 -0.9378 22 6 7.6799 -4.7533 -1.8209 23 6 8.1382 -3.3232 -2.2032 24 6 7.8737 -2.5198 -0.9054 25 6 6.5575 -3.1102 -0.3562 26 6 5.1731 -4.6381 -1.7862 27 1 -0.4850 0.8401 0.0004 28 1 -0.2226 -1.5243 1.4423 29 1 -1.4052 -3.6369 1.8324 30 1 -0.5657 -5.7342 0.8638 31 1 1.4646 -5.7485 -0.5181 32 1 3.8140 -6.4680 -0.0857 33 1 3.0544 -5.1687 0.8667 34 1 5.1841 -6.0253 1.8994 35 1 5.2544 -4.2915 1.4996 36 1 6.3454 -6.5569 -0.2325 37 1 7.3228 -5.4694 0.7824 38 1 8.4600 -5.2666 -1.2589 39 1 7.4148 -5.3204 -2.7131 40 1 7.5406 -2.9335 -3.0273 41 1 9.1987 -3.3120 -2.4549 42 1 7.7519 -1.4604 -1.1307 43 1 8.6845 -2.6663 -0.1917 44 1 5.7122 -2.5022 -0.6783 45 1 6.5933 -3.1548 0.7323 46 1 5.1494 -3.8284 -2.5155 47 1 5.1623 -5.5981 -2.3023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867662838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:59 Heat of formation + Delta-G solvation = -49.567769 kcal Electronic energy + Delta-G solvation = -27394.093548 eV Core-core repulsion = 23925.480459 eV Total energy + Delta-G solvation = -3468.613088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61846 -39.93700 -38.47117 -36.77228 -35.61570 -33.34104 -32.16585 -31.64638 -30.83130 -29.59397 -27.55833 -26.41071 -25.62591 -23.65719 -22.87866 -22.77015 -21.44319 -20.39741 -19.30387 -18.94678 -17.97977 -17.33517 -17.02431 -16.51727 -16.31829 -16.08336 -15.72203 -15.33443 -14.84007 -14.79033 -14.49016 -14.36338 -14.13642 -13.95965 -13.75638 -13.68071 -13.49896 -13.16199 -12.91962 -12.83984 -12.61491 -12.26843 -12.20892 -11.98029 -11.96719 -11.82290 -11.74598 -11.65776 -11.48053 -11.44865 -11.32256 -11.15441 -11.08490 -10.44649 -9.51535 -9.31466 -9.27960 -8.70285 -6.42193 0.65302 0.98969 1.27020 1.41425 1.43419 2.05132 2.14097 2.33875 2.69710 3.56661 3.64279 3.67697 3.69759 4.06658 4.11225 4.16249 4.30613 4.34758 4.35094 4.40011 4.54559 4.58184 4.62428 4.68014 4.75729 4.82106 4.84213 4.88669 4.94155 4.95564 5.05636 5.06267 5.08070 5.14235 5.22167 5.23771 5.26660 5.27937 5.34802 5.47428 5.50736 5.54168 5.58144 5.80928 5.86175 6.01763 6.10410 6.27781 6.53967 6.67284 6.86102 6.93745 7.52788 8.24828 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.005676 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.882738 B = 4932.248075 C = 6506.962028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.464 4.464 8 H 0.053 0.947 9 C 0.113 3.887 10 C -0.182 4.182 11 C -0.093 4.093 12 C -0.233 4.233 13 C -0.056 4.056 14 C -0.267 4.267 15 C 0.576 3.424 16 O -0.592 6.592 17 N -0.609 5.609 18 C 0.102 3.898 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.070 4.070 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.123 3.877 27 H 0.290 0.710 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.405 -11.229 2.356 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.172 1.172 7 C -0.493 4.493 8 H 0.071 0.929 9 C 0.110 3.890 10 C -0.201 4.201 11 C -0.112 4.112 12 C -0.252 4.252 13 C -0.075 4.075 14 C -0.272 4.272 15 C 0.369 3.631 16 O -0.474 6.474 17 N -0.342 5.342 18 C -0.020 4.020 19 C -0.172 4.172 20 C -0.133 4.133 21 C -0.071 4.071 22 C -0.141 4.141 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.151 4.151 26 C 0.001 3.999 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.259 -10.658 1.876 17.115 hybrid contribution -0.316 1.443 -0.260 1.500 sum 12.943 -9.215 1.616 15.970 Atomic orbital electron populations 1.69731 1.08493 1.30532 1.35653 1.26667 0.95655 1.04123 0.91455 0.85297 0.78930 0.76827 0.79510 1.19561 1.19094 1.17225 1.19584 0.95328 0.91993 1.42399 0.92910 1.17740 0.91619 0.91551 0.88083 1.21366 0.98753 0.97617 1.02401 1.21152 0.98540 0.92788 0.98703 1.20748 0.99988 0.97836 1.06673 1.20903 0.95066 0.95163 0.96346 1.19739 1.01263 0.95910 1.10293 1.18565 0.83524 0.78545 0.82487 1.90630 1.81252 1.40493 1.34978 1.48082 1.20379 1.37162 1.28586 1.21986 0.99719 0.93512 0.86764 1.21983 0.94430 1.02085 0.98711 1.21543 0.97970 0.98456 0.95351 1.21296 0.94433 0.95133 0.96235 1.22369 0.95722 0.96789 0.99176 1.22508 1.01583 0.95569 0.96457 1.22378 0.96853 0.98684 0.98084 1.22172 0.97076 0.95832 1.00062 1.21695 0.84294 1.01485 0.92440 0.89871 0.87432 0.86255 0.85069 0.85985 0.89526 0.90348 0.88270 0.93763 0.89807 0.89995 0.88837 0.90642 0.93362 0.89502 0.93554 0.89846 0.96408 0.91931 0.92720 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.66 10.82 21.88 0.24 -44.43 16 2 C 0.04 1.97 5.26 85.37 0.45 2.42 16 3 Si 0.97 42.39 29.58 68.60 2.03 44.41 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.46 -27.33 7.91 23.41 0.19 -27.14 16 8 H 0.05 3.27 7.00 -2.91 -0.02 3.25 16 9 C 0.11 6.38 5.58 -21.11 -0.12 6.26 16 10 C -0.18 -9.56 8.66 22.72 0.20 -9.36 16 11 C -0.09 -4.12 10.01 22.26 0.22 -3.90 16 12 C -0.23 -9.34 10.03 22.41 0.22 -9.11 16 13 C -0.06 -2.36 7.56 22.50 0.17 -2.19 16 14 C -0.27 -13.49 4.85 -19.70 -0.10 -13.59 16 15 C 0.58 28.37 6.50 86.67 0.56 28.93 16 16 O -0.59 -34.34 15.24 -4.05 -0.06 -34.40 16 17 N -0.61 -22.60 2.69 -823.28 -2.22 -24.82 16 18 C 0.10 2.97 5.30 86.36 0.46 3.43 16 19 C -0.13 -3.16 5.85 30.69 0.18 -2.98 16 20 C -0.10 -1.85 4.42 30.52 0.13 -1.72 16 21 C -0.07 -1.72 0.62 -51.83 -0.03 -1.75 16 22 C -0.10 -1.90 5.89 31.59 0.19 -1.71 16 23 C -0.12 -2.60 6.91 31.92 0.22 -2.38 16 24 C -0.12 -3.02 6.84 31.71 0.22 -2.80 16 25 C -0.11 -3.45 5.37 31.25 0.17 -3.29 16 26 C 0.12 3.88 4.75 86.23 0.41 4.29 16 27 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16 28 H 0.11 5.90 6.19 -2.91 -0.02 5.88 16 29 H 0.12 4.50 8.06 -2.92 -0.02 4.47 16 30 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.12 4.31 7.40 -2.91 -0.02 4.29 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.63 5.16 -2.39 -0.01 2.62 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.28 6.52 -2.39 -0.02 1.27 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.32 8.13 -2.38 -0.02 1.30 16 38 H 0.09 1.30 7.83 -2.39 -0.02 1.28 16 39 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.02 0.71 7.58 -2.39 -0.02 0.69 16 45 H 0.06 1.85 6.39 -2.39 -0.02 1.83 16 46 H 0.05 2.11 7.00 -2.39 -0.02 2.09 16 47 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 Total: -1.00 -71.12 358.39 4.68 -66.44 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.96 Total: 29.41 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.74 Total: -36.61 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.98 Total: -69.25 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.06 Total: -34.40 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -71.12 4.68 -66.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867662838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.871 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds