Wall clock time and date at job start Fri Apr 10 2020 22:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.46801 * 2 1 4 4 C 1.34739 * 117.00049 * 179.97438 * 3 2 1 5 5 O 1.21501 * 120.00132 * 359.97438 * 4 3 2 6 6 C 1.47503 * 120.00184 * 180.02562 * 4 3 2 7 7 C 1.39578 * 120.21665 * 6.18411 * 6 4 3 8 8 C 1.37914 * 119.96068 * 180.30414 * 7 6 4 9 9 C 1.38525 * 120.41241 * 359.69793 * 8 7 6 10 10 C 1.38047 * 120.43780 * 0.02562 * 9 8 7 11 11 C 1.39182 * 120.02574 * 0.02562 * 10 9 8 12 12 C 1.48208 * 120.20074 * 179.97438 * 11 10 9 13 13 C 1.39788 * 119.99757 * 238.47157 * 12 11 10 14 14 C 1.38589 * 120.34744 * 179.97438 * 13 12 11 15 15 F 1.35100 * 119.83148 * 180.27278 * 14 13 12 16 16 C 1.37956 * 120.33738 * 359.97438 * 14 13 12 17 17 C 1.40721 * 119.99105 * 359.97438 * 16 14 13 18 18 C 1.41429 * 120.17272 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99936 * 213.59121 * 18 17 16 20 20 C 1.39925 * 119.99907 * 33.59540 * 18 17 16 21 21 N 1.30838 * 120.00028 * 0.98479 * 20 18 17 22 22 Si 1.86800 * 120.00122 * 180.98086 * 20 18 17 23 23 H 1.48500 * 109.46652 * 89.99981 * 22 20 18 24 24 H 1.48499 * 109.47160 * 209.99893 * 22 20 18 25 25 H 1.48499 * 109.46869 * 330.00272 * 22 20 18 26 26 C 1.38847 * 120.00154 * 58.46731 * 12 11 10 27 27 H 1.08993 * 109.47776 * 299.99696 * 1 2 3 28 28 H 1.09000 * 109.47152 * 60.00623 * 1 2 3 29 29 H 1.09007 * 109.46392 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47915 * 239.99801 * 2 1 3 31 31 H 1.09000 * 109.47152 * 119.99377 * 2 1 3 32 32 H 1.07991 * 120.01448 * 0.02562 * 7 6 4 33 33 H 1.08001 * 119.79264 * 179.72167 * 8 7 6 34 34 H 1.08001 * 119.78058 * 180.02562 * 9 8 7 35 35 H 1.08005 * 119.98510 * 180.02562 * 10 9 8 36 36 H 1.07998 * 119.82488 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.00583 * 179.97438 * 16 14 13 38 38 H 0.96995 * 120.00131 * 179.97438 * 21 20 18 39 39 H 1.08004 * 120.16576 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3497 1.5457 0.0005 5 8 4.0899 0.5822 0.0015 6 6 3.9134 2.9087 0.0011 7 6 3.0738 4.0161 0.1311 8 6 3.6059 5.2884 0.1247 9 6 4.9723 5.4764 -0.0039 10 6 5.8187 4.3930 -0.1278 11 6 5.3012 3.1009 -0.1246 12 6 6.2063 1.9349 -0.2579 13 6 6.0339 1.0333 -1.3121 14 6 6.8764 -0.0592 -1.4440 15 9 6.7038 -0.9210 -2.4701 16 6 7.8943 -0.2677 -0.5365 17 6 8.0814 0.6316 0.5296 18 6 9.1233 0.4212 1.4625 19 1 8.9874 0.7026 2.4963 20 6 10.3301 -0.1515 1.0461 21 7 10.5019 -0.4747 -0.2101 22 14 11.6962 -0.4547 2.2836 23 1 11.5417 -1.8107 2.8691 24 1 13.0120 -0.3567 1.6023 25 1 11.6207 0.5622 3.3632 26 6 7.2255 1.7382 0.6642 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0077 3.8767 0.2321 33 1 2.9532 6.1435 0.2209 34 1 5.3781 6.4773 -0.0072 35 1 6.8829 4.5480 -0.2272 36 1 5.2400 1.1889 -2.0276 37 1 8.5474 -1.1211 -0.6441 38 1 11.3386 -0.8713 -0.4988 39 1 7.3614 2.4334 1.4795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244030098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:56:35 Heat of formation + Delta-G solvation = -89.442498 kcal Electronic energy + Delta-G solvation = -25407.752157 eV Core-core repulsion = 21580.397909 eV Total energy + Delta-G solvation = -3827.354248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.55884 -40.36688 -38.71808 -37.12084 -36.14591 -33.74606 -32.00048 -31.58011 -30.85990 -29.56301 -28.04799 -25.40567 -24.59899 -22.83017 -22.69597 -21.12393 -20.54033 -20.07463 -17.88433 -17.38079 -16.51144 -16.33500 -15.86955 -15.26381 -15.05184 -14.77378 -14.57702 -14.49073 -14.23378 -14.12510 -13.91003 -13.21063 -13.06435 -12.83150 -12.78803 -12.57710 -11.94914 -11.79965 -11.68472 -11.53174 -11.50425 -11.27311 -11.08455 -11.00671 -10.71572 -10.48547 -10.32298 -9.99982 -9.81949 -9.60823 -9.19786 -8.88873 -8.68313 -7.27832 -7.17111 -6.65825 -4.45159 0.89096 1.43802 2.69489 2.75902 2.85680 2.92996 3.08743 3.11256 3.18925 3.94540 3.99299 4.59118 4.81912 4.93066 4.96523 4.99517 5.04815 5.13847 5.28355 5.42421 5.48434 5.59163 5.70131 5.73442 5.79987 5.88001 6.00666 6.10962 6.29866 6.37339 6.49322 6.56528 6.59886 6.74429 6.88087 7.02999 7.03866 7.24478 7.48921 7.66280 7.75899 7.96676 8.15796 8.21069 8.56470 8.83813 8.86329 10.26442 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.004286 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.277149 B = 6530.626637 C = 7570.826972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.364 6.364 4 C 0.490 3.510 5 O -0.458 6.458 6 C -0.122 4.122 7 C -0.067 4.067 8 C -0.148 4.148 9 C -0.086 4.086 10 C -0.122 4.122 11 C 0.048 3.952 12 C -0.029 4.029 13 C -0.194 4.194 14 C 0.096 3.904 15 F -0.168 7.168 16 C -0.175 4.175 17 C 0.122 3.878 18 C -0.463 4.463 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.809 5.809 22 Si 0.916 3.084 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.189 4.189 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.280 0.720 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 7.374 0.722 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.283 6.283 4 C 0.333 3.667 5 O -0.342 6.342 6 C -0.124 4.124 7 C -0.085 4.085 8 C -0.166 4.166 9 C -0.104 4.104 10 C -0.140 4.140 11 C 0.048 3.952 12 C -0.029 4.029 13 C -0.214 4.214 14 C 0.077 3.923 15 F -0.147 7.147 16 C -0.196 4.196 17 C 0.120 3.880 18 C -0.494 4.494 19 H 0.097 0.903 20 C -0.145 4.145 21 N -0.435 5.435 22 Si 0.740 3.260 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.208 4.208 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.099 6.897 0.530 14.813 hybrid contribution 0.607 -0.464 0.252 0.805 sum -12.492 6.433 0.781 14.073 Atomic orbital electron populations 1.21786 0.92966 1.02731 1.03206 1.22944 0.94847 0.80516 1.02793 1.86498 1.24610 1.31978 1.85219 1.21159 0.80357 0.90407 0.74814 1.91082 1.58924 1.42007 1.42229 1.19151 0.93216 0.90204 1.09781 1.21324 0.99689 0.91627 0.95840 1.21053 0.95386 0.96764 1.03425 1.21325 0.93524 0.98927 0.96647 1.21320 1.00735 0.90852 1.01068 1.19123 0.90721 0.94003 0.91392 1.17861 0.95195 0.93224 0.96617 1.19974 1.02123 0.97598 1.01718 1.17527 0.98323 0.89393 0.87076 1.91326 1.95491 1.69644 1.58239 1.21513 0.97994 1.02466 0.97583 1.17249 0.90599 0.88552 0.91648 1.19486 0.97255 1.36224 0.96421 0.90281 1.25879 0.99956 0.92909 0.95709 1.69757 1.26016 1.32006 1.15767 0.86193 0.79418 0.79619 0.80741 1.19445 1.20274 1.18676 1.21148 0.99065 0.99766 1.00864 0.91658 0.91668 0.90435 0.91261 0.91263 0.84921 0.85670 0.85576 0.84661 0.89051 0.84765 0.90930 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.80 6.20 37.16 0.23 1.03 16 3 O -0.36 -5.51 9.49 -40.60 -0.39 -5.89 16 4 C 0.49 8.93 7.59 34.51 0.26 9.19 16 5 O -0.46 -9.99 12.08 -19.27 -0.23 -10.22 16 6 C -0.12 -2.09 5.88 -104.71 -0.62 -2.70 16 7 C -0.07 -0.88 9.61 -39.20 -0.38 -1.26 16 8 C -0.15 -1.70 10.02 -39.59 -0.40 -2.10 16 9 C -0.09 -1.05 10.03 -39.55 -0.40 -1.44 16 10 C -0.12 -1.89 9.63 -39.30 -0.38 -2.27 16 11 C 0.05 0.89 5.40 -104.53 -0.56 0.33 16 12 C -0.03 -0.65 4.16 -105.00 -0.44 -1.09 16 13 C -0.19 -4.66 6.78 -38.87 -0.26 -4.92 16 14 C 0.10 2.49 7.28 -39.56 -0.29 2.20 16 15 F -0.17 -4.23 17.26 2.25 0.04 -4.19 16 16 C -0.18 -4.79 8.62 -38.75 -0.33 -5.12 16 17 C 0.12 3.27 5.53 -106.88 -0.59 2.68 16 18 C -0.46 -12.26 9.05 -37.74 -0.34 -12.60 16 19 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 20 C 0.07 1.80 5.37 -17.34 -0.09 1.70 16 21 N -0.81 -21.27 10.71 55.55 0.59 -20.67 16 22 Si 0.92 18.89 29.56 -169.99 -5.02 13.86 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.19 -4.59 9.39 -38.49 -0.36 -4.95 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.13 1.48 7.62 -52.49 -0.40 1.08 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 36 H 0.09 2.10 7.79 -52.49 -0.41 1.69 16 37 H 0.13 3.82 6.23 -52.49 -0.33 3.50 16 38 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 39 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -30.16 341.96 -8.91 -39.07 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.49 Total: 5.15 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -4.56 Total: -22.25 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.59 Total: -20.67 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.62 Total: -16.12 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.16 -8.91 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244030098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.375 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds