Wall clock time and date at job start Fri Apr 10 2020 22:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36601 * 120.00256 * 2 1 4 4 C 1.39806 * 120.00315 * 180.02562 * 3 2 1 5 5 C 1.47759 * 119.99632 * 179.97438 * 4 3 2 6 6 C 1.39120 * 120.32355 * 310.00073 * 5 4 3 7 7 C 1.38392 * 119.95016 * 180.02562 * 6 5 4 8 8 F 1.35100 * 119.69220 * 179.97438 * 7 6 5 9 9 C 1.39225 * 120.62029 * 359.97418 * 7 6 5 10 10 C 1.36356 * 120.66394 * 0.04798 * 9 7 6 11 11 C 1.40809 * 120.02318 * 0.22527 * 10 9 7 12 12 C 1.40748 * 120.30435 * 179.72473 * 11 10 9 13 13 H 1.07997 * 120.00064 * 149.31353 * 12 11 10 14 14 C 1.40134 * 119.99943 * 329.31492 * 12 11 10 15 15 N 1.30751 * 119.99856 * 162.49530 * 14 12 11 16 16 Si 1.86799 * 120.00329 * 342.49573 * 14 12 11 17 17 H 1.48501 * 109.47138 * 95.36748 * 16 14 12 18 18 H 1.48495 * 109.47308 * 215.37112 * 16 14 12 19 19 H 1.48499 * 109.46832 * 335.37121 * 16 14 12 20 20 C 1.39807 * 120.01181 * 0.24528 * 4 3 2 21 21 C 1.36604 * 119.99875 * 359.44716 * 20 4 3 22 22 C 1.50694 * 120.00228 * 180.25320 * 21 20 4 23 23 C 1.39838 * 120.00298 * 180.02562 * 2 1 3 24 24 C 1.47563 * 120.00335 * 0.02562 * 23 2 1 25 25 O 1.21499 * 120.00173 * 89.99578 * 24 23 2 26 26 O 1.34751 * 119.99749 * 269.99590 * 24 23 2 27 27 H 1.08998 * 109.46998 * 90.00605 * 1 2 3 28 28 H 1.09007 * 109.47067 * 210.00388 * 1 2 3 29 29 H 1.09002 * 109.46982 * 330.00069 * 1 2 3 30 30 H 1.08003 * 119.99426 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.02624 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.67010 * 180.02562 * 9 7 6 33 33 H 1.07997 * 119.98542 * 179.97438 * 10 9 7 34 34 H 0.96996 * 119.99365 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.00262 * 179.73087 * 20 4 3 36 36 H 1.09003 * 109.47279 * 270.32322 * 22 21 20 37 37 H 1.09003 * 109.47452 * 30.32359 * 22 21 20 38 38 H 1.08997 * 109.47397 * 150.32734 * 22 21 20 39 39 H 0.96698 * 116.99555 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1830 0.0000 4 6 3.5881 1.1830 -0.0005 5 6 4.3268 2.4627 -0.0011 6 6 4.0091 3.4567 -0.9211 7 6 4.7063 4.6521 -0.9151 8 9 4.3938 5.6136 -1.8112 9 6 5.7269 4.8732 0.0058 10 6 6.0594 3.9162 0.9184 11 6 5.3719 2.6875 0.9331 12 6 5.7142 1.6933 1.8687 13 1 4.9597 1.0118 2.2330 14 6 7.0340 1.5877 2.3276 15 7 7.2945 0.9194 3.4209 16 14 8.4212 2.4015 1.3775 17 1 8.7072 3.7353 1.9643 18 1 9.6386 1.5547 1.4564 19 1 8.0207 2.5614 -0.0434 20 6 4.2874 -0.0276 -0.0063 21 6 3.6047 -1.2108 0.0001 22 6 4.3584 -2.5157 -0.0003 23 6 2.2063 -1.2110 -0.0005 24 6 1.4686 -2.4890 -0.0017 25 8 1.1652 -3.0144 -1.0543 26 8 1.1314 -3.0733 1.1648 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6500 2.1183 0.0004 31 1 3.2190 3.2956 -1.6395 32 1 6.2607 5.8120 -0.0030 33 1 6.8532 4.0992 1.6274 34 1 8.2081 0.8461 3.7383 35 1 5.3674 -0.0274 -0.0111 36 1 4.5401 -2.8301 -1.0281 37 1 5.3108 -2.3854 0.5135 38 1 3.7695 -3.2756 0.5132 39 1 0.6490 -3.9098 1.1134 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244947258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:56:59 Heat of formation + Delta-G solvation = -111.558378 kcal Electronic energy + Delta-G solvation = -25503.935461 eV Core-core repulsion = 21675.622197 eV Total energy + Delta-G solvation = -3828.313264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.74108 -40.46751 -38.97382 -37.51839 -35.94501 -33.87742 -33.45006 -32.70726 -30.43723 -29.18559 -27.70763 -26.40689 -25.34611 -23.81940 -22.00101 -21.25405 -20.34394 -19.67980 -18.06953 -17.76845 -16.99790 -16.62570 -16.16046 -15.54956 -14.96741 -14.52211 -14.41503 -14.25347 -14.12623 -13.87248 -13.67736 -13.25655 -13.06923 -12.90045 -12.87790 -12.68910 -12.52823 -12.24688 -11.95627 -11.69557 -11.52279 -11.46131 -11.29695 -11.08031 -10.85246 -10.68383 -10.50335 -10.41827 -10.23956 -9.79417 -9.37811 -8.60231 -8.27706 -7.80958 -7.57736 -7.21988 -4.70073 1.27712 1.82429 2.20714 2.25962 2.36428 2.92711 3.03817 3.13156 3.21861 3.75398 4.03379 4.20923 4.92006 4.98924 5.12432 5.17474 5.34598 5.46672 5.51756 5.66128 5.67501 5.73827 5.79484 5.81458 5.86052 5.92212 5.98976 6.11737 6.29567 6.38273 6.43438 6.49756 6.52953 6.71081 6.80644 6.86766 6.99186 7.08043 7.17945 7.31183 7.41160 7.58043 7.82589 7.92696 8.07256 8.34231 8.48593 9.77410 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.005138 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.350211 B = 5448.492217 C = 7040.888638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.133 4.133 4 C 0.047 3.953 5 C -0.160 4.160 6 C -0.079 4.079 7 C -0.050 4.050 8 F -0.169 7.169 9 C -0.094 4.094 10 C -0.210 4.210 11 C 0.101 3.899 12 C -0.424 4.424 13 H 0.102 0.898 14 C 0.084 3.916 15 N -0.785 5.785 16 Si 0.904 3.096 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.240 1.240 20 C -0.098 4.098 21 C -0.043 4.043 22 C -0.119 4.119 23 C -0.141 4.141 24 C 0.545 3.455 25 O -0.514 6.514 26 O -0.510 6.510 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.290 0.710 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -4.155 -2.775 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.045 4.045 3 C -0.151 4.151 4 C 0.047 3.953 5 C -0.161 4.161 6 C -0.098 4.098 7 C -0.070 4.070 8 F -0.148 7.148 9 C -0.113 4.113 10 C -0.229 4.229 11 C 0.097 3.903 12 C -0.451 4.451 13 H 0.119 0.881 14 C -0.138 4.138 15 N -0.407 5.407 16 Si 0.729 3.271 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.163 1.163 20 C -0.116 4.116 21 C -0.043 4.043 22 C -0.175 4.175 23 C -0.142 4.142 24 C 0.388 3.612 25 O -0.402 6.402 26 O -0.321 6.321 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.354 -4.052 -2.832 7.287 hybrid contribution 0.356 -0.025 -0.297 0.464 sum -4.998 -4.077 -3.129 7.168 Atomic orbital electron populations 1.20852 0.91324 1.02785 1.02423 1.19295 0.95402 0.91476 0.98286 1.20807 0.93605 0.96893 1.03835 1.18839 0.91799 0.92803 0.91868 1.18277 1.04187 0.93175 1.00500 1.20664 0.98515 0.91876 0.98739 1.17056 1.04572 0.88651 0.96733 1.91316 1.93166 1.63133 1.67209 1.20425 0.96469 0.99205 0.95189 1.20657 1.05205 0.94434 1.02565 1.17639 0.90204 0.92040 0.90371 1.19554 0.95699 1.12992 1.16837 0.88066 1.26268 1.00815 0.93319 0.93443 1.69645 1.23456 1.30974 1.16657 0.86402 0.78787 0.78839 0.83022 1.19234 1.21266 1.16338 1.20933 1.00930 0.90087 0.99601 1.19400 0.90925 0.96136 0.97874 1.20868 1.00674 0.93639 1.02361 1.18589 0.92878 0.89358 1.13395 1.21159 0.74837 0.84366 0.80838 1.90878 1.52023 1.64252 1.33056 1.84800 1.70655 1.40850 1.35748 0.90931 0.92186 0.90737 0.85620 0.87165 0.87504 0.87096 0.89908 0.84363 0.90975 0.90245 0.92278 0.73809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.61 36.01 0.35 -1.17 16 2 C -0.04 -0.72 5.88 -104.62 -0.61 -1.34 16 3 C -0.13 -2.31 9.09 -39.59 -0.36 -2.67 16 4 C 0.05 0.92 4.94 -104.83 -0.52 0.40 16 5 C -0.16 -3.38 5.52 -104.25 -0.58 -3.95 16 6 C -0.08 -1.60 9.47 -39.20 -0.37 -1.97 16 7 C -0.05 -1.05 7.31 -39.16 -0.29 -1.34 16 8 F -0.17 -3.43 17.26 2.25 0.04 -3.39 16 9 C -0.09 -1.94 9.94 -39.89 -0.40 -2.33 16 10 C -0.21 -4.58 7.09 -39.29 -0.28 -4.86 16 11 C 0.10 2.29 5.09 -106.55 -0.54 1.75 16 12 C -0.42 -10.05 7.50 -37.92 -0.28 -10.33 16 13 H 0.10 2.57 7.01 -52.49 -0.37 2.20 16 14 C 0.08 1.94 5.41 -17.30 -0.09 1.85 16 15 N -0.79 -18.70 13.92 55.56 0.77 -17.93 16 16 Si 0.90 18.52 24.52 -169.99 -4.17 14.35 16 17 H -0.27 -5.32 6.73 56.52 0.38 -4.94 16 18 H -0.29 -5.69 7.11 56.52 0.40 -5.28 16 19 H -0.24 -5.07 6.85 56.52 0.39 -4.68 16 20 C -0.10 -1.85 7.66 -39.59 -0.30 -2.16 16 21 C -0.04 -0.75 5.88 -104.62 -0.61 -1.36 16 22 C -0.12 -1.75 9.61 36.00 0.35 -1.40 16 23 C -0.14 -2.39 5.76 -104.90 -0.60 -3.00 16 24 C 0.54 8.39 4.66 34.53 0.16 8.55 16 25 O -0.51 -8.85 17.89 -19.26 -0.34 -9.20 16 26 O -0.51 -6.30 13.44 -40.63 -0.55 -6.84 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.74 7.07 -51.92 -0.37 0.37 16 29 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.13 1.98 8.04 -52.48 -0.42 1.56 16 31 H 0.11 2.00 8.04 -52.49 -0.42 1.58 16 32 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.11 2.37 4.79 -52.49 -0.25 2.12 16 34 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 35 H 0.14 2.69 7.29 -52.49 -0.38 2.31 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.06 0.81 7.07 -51.93 -0.37 0.45 16 39 H 0.40 2.84 9.11 45.56 0.42 3.25 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -27.16 335.34 -7.63 -34.78 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.44 Total: 8.51 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -4.99 Total: -25.34 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.77 Total: -17.93 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.89 Total: -16.04 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.17 Total: 14.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.16 -7.63 -34.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244947258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.776 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds