Wall clock time and date at job start Fri Apr 10 2020 22:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.52995 * 109.47455 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47432 * 179.97438 * 4 3 2 6 6 C 1.37044 * 120.00613 * 263.84200 * 5 4 3 7 7 H 1.07993 * 120.00337 * 142.32570 * 6 5 4 8 8 C 1.38879 * 119.99457 * 322.32813 * 6 5 4 9 9 N 1.31482 * 120.00466 * 338.74047 * 8 6 5 10 10 Si 1.86798 * 120.00064 * 158.74855 * 8 6 5 11 11 H 1.48503 * 109.47166 * 59.99361 * 10 8 6 12 12 H 1.48502 * 109.47594 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47138 * 300.00065 * 10 8 6 14 14 C 1.34786 * 119.99786 * 83.84120 * 5 4 3 15 15 S 1.71196 * 119.99836 * 0.02562 * 14 5 4 16 16 N 1.34770 * 119.99639 * 179.97438 * 14 5 4 17 17 C 1.40124 * 119.99755 * 183.51494 * 16 14 5 18 18 C 1.38993 * 120.08675 * 41.10480 * 17 16 14 19 19 F 1.35106 * 120.04532 * 359.70765 * 18 17 16 20 20 C 1.38341 * 119.91773 * 179.97438 * 18 17 16 21 21 C 1.38276 * 120.08092 * 0.02562 * 20 18 17 22 22 C 1.38266 * 120.17503 * 359.95628 * 21 20 18 23 23 C 1.38334 * 120.08930 * 0.04394 * 22 21 20 24 24 F 1.35092 * 120.04742 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47096 * 300.00058 * 1 2 3 27 27 H 1.08995 * 109.46934 * 60.00071 * 1 2 3 28 28 H 1.09005 * 109.47096 * 239.99942 * 2 1 3 29 29 H 1.08995 * 109.46934 * 119.99929 * 2 1 3 30 30 H 1.08997 * 109.47100 * 59.99658 * 3 2 1 31 31 H 1.09007 * 109.46819 * 300.00068 * 3 2 1 32 32 H 1.09005 * 109.46995 * 59.99878 * 4 3 2 33 33 H 1.09005 * 109.46819 * 300.00544 * 4 3 2 34 34 H 0.97003 * 120.00273 * 180.02562 * 9 8 6 35 35 H 0.97000 * 120.00755 * 3.52094 * 16 14 5 36 36 H 1.07994 * 119.96063 * 179.97438 * 20 18 17 37 37 H 1.08004 * 119.91055 * 179.97438 * 21 20 18 38 38 H 1.07999 * 119.95344 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.4063 3.4270 -1.1815 7 1 4.1841 4.4719 -1.3399 8 6 5.0448 2.6947 -2.1738 9 7 5.6840 1.5878 -1.8658 10 14 4.9957 3.2823 -3.9463 11 1 5.6156 4.6286 -4.0388 12 1 5.7477 2.3315 -4.8041 13 1 3.5851 3.3544 -4.4050 14 6 4.1654 3.5011 1.1591 15 16 3.7313 2.7472 2.6335 16 7 4.6152 4.7716 1.1585 17 6 4.7964 5.4511 2.3705 18 6 5.3496 4.7927 3.4625 19 9 5.7082 3.4942 3.3590 20 6 5.5275 5.4671 4.6572 21 6 5.1552 6.7944 4.7659 22 6 4.6049 7.4529 3.6818 23 6 4.4239 6.7854 2.4838 24 9 3.8866 7.4298 1.4249 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 6.1303 1.0764 -2.5589 35 1 4.8133 5.2157 0.3192 36 1 5.9569 4.9562 5.5062 37 1 5.2950 7.3181 5.7001 38 1 4.3158 8.4897 3.7706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247067786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:31 Heat of formation + Delta-G solvation = -33.833428 kcal Electronic energy + Delta-G solvation = -24369.419422 eV Core-core repulsion = 20588.752962 eV Total energy + Delta-G solvation = -3780.666460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.69725 -48.15174 -39.12387 -38.02266 -35.54710 -34.07192 -32.43764 -29.94412 -29.51907 -28.12966 -26.14041 -23.77031 -22.73233 -22.05163 -21.38384 -20.47238 -18.33237 -18.03622 -17.30166 -16.54922 -16.27652 -15.51433 -15.25239 -15.09148 -15.07809 -14.84452 -14.67021 -14.22002 -14.03005 -13.73058 -13.65449 -12.88720 -12.44099 -12.30495 -12.22178 -11.83941 -11.79669 -11.55669 -11.47785 -11.33848 -11.00838 -10.79988 -10.69068 -10.54045 -10.48240 -10.08306 -9.86757 -9.51440 -8.85356 -8.35342 -7.67125 -7.01180 -6.66905 -5.90054 -4.61384 1.23486 1.43239 2.60394 2.91357 2.93896 2.97506 3.17803 3.62362 3.71097 3.78744 4.27359 4.44169 4.69131 4.90366 4.99199 5.10277 5.39594 5.48977 5.51882 5.63298 5.85322 6.03552 6.09824 6.22205 6.22953 6.31037 6.32227 6.38937 6.48050 6.49708 6.60402 6.74587 6.78823 6.89205 6.96108 7.19795 7.29287 7.50831 7.74003 8.05439 8.63203 8.96599 10.02048 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.005587 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.495809 B = 5010.076413 C = 6180.116215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.113 3.887 5 N -0.347 5.347 6 C -0.374 4.374 7 H 0.098 0.902 8 C 0.063 3.937 9 N -0.823 5.823 10 Si 0.927 3.073 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.265 1.265 14 C 0.475 3.525 15 S -0.723 6.723 16 N -0.635 5.635 17 C 0.099 3.901 18 C 0.166 3.834 19 F -0.080 7.080 20 C -0.161 4.161 21 C -0.083 4.083 22 C -0.164 4.164 23 C 0.097 3.903 24 F -0.136 7.136 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.283 0.717 35 H 0.409 0.591 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 6.214 3.507 7.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.168 4.168 4 C -0.010 4.010 5 N -0.032 5.032 6 C -0.505 4.505 7 H 0.116 0.884 8 C -0.152 4.152 9 N -0.452 5.452 10 Si 0.751 3.249 11 H -0.191 1.191 12 H -0.201 1.201 13 H -0.189 1.189 14 C 0.115 3.885 15 S -0.591 6.591 16 N -0.264 5.264 17 C -0.001 4.001 18 C 0.140 3.860 19 F -0.057 7.057 20 C -0.181 4.181 21 C -0.103 4.103 22 C -0.183 4.183 23 C 0.075 3.925 24 F -0.115 7.115 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.256 5.285 4.124 6.820 hybrid contribution 0.244 0.728 -2.355 2.476 sum -1.012 6.012 1.769 6.348 Atomic orbital electron populations 1.21737 0.96452 1.00743 1.01533 1.21358 0.95142 0.97118 1.01686 1.21850 0.96205 0.96521 1.02179 1.21888 0.92557 0.81469 1.05077 1.42724 1.46167 1.11917 1.02403 1.19619 1.40844 0.98025 0.92011 0.88441 1.25530 0.92575 0.95732 1.01329 1.69988 1.24797 1.15069 1.35395 0.85981 0.79392 0.79286 0.80224 1.19052 1.20093 1.18930 1.21567 0.90476 0.85356 0.91074 1.92519 1.73619 1.74515 1.18459 1.41570 1.66090 1.11960 1.06789 1.17426 1.03463 0.90919 0.88300 1.17241 0.95731 0.79773 0.93295 1.91925 1.87178 1.30441 1.96178 1.21072 1.04870 0.95437 0.96743 1.20650 0.97898 0.93655 0.98109 1.20810 1.04992 1.00982 0.91563 1.17206 1.00297 0.89788 0.85243 1.91471 1.83767 1.81055 1.55173 0.93335 0.92824 0.93225 0.92559 0.91842 0.90949 0.92825 0.87939 0.89487 0.90596 0.75073 0.84420 0.84677 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.11 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.58 5.43 -26.73 -0.15 -2.72 16 4 C 0.11 2.59 4.64 -4.05 -0.02 2.57 16 5 N -0.35 -8.34 2.53 -116.75 -0.30 -8.63 16 6 C -0.37 -8.76 8.55 -14.98 -0.13 -8.89 16 7 H 0.10 2.18 6.91 -52.49 -0.36 1.81 16 8 C 0.06 1.43 4.89 -17.46 -0.09 1.34 16 9 N -0.82 -19.78 11.56 55.49 0.64 -19.14 16 10 Si 0.93 17.52 29.60 -169.99 -5.03 12.49 16 11 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 12 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 13 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 14 C 0.48 11.49 7.08 -86.92 -0.62 10.88 16 15 S -0.72 -18.44 22.20 -107.50 -2.39 -20.82 16 16 N -0.63 -13.69 5.06 -11.29 -0.06 -13.75 16 17 C 0.10 1.93 5.97 -83.50 -0.50 1.43 16 18 C 0.17 3.19 6.02 -39.26 -0.24 2.95 16 19 F -0.08 -1.82 12.66 2.25 0.03 -1.79 16 20 C -0.16 -2.39 10.02 -39.53 -0.40 -2.78 16 21 C -0.08 -1.01 10.04 -39.56 -0.40 -1.41 16 22 C -0.16 -2.15 10.02 -39.54 -0.40 -2.55 16 23 C 0.10 1.62 7.31 -39.26 -0.29 1.33 16 24 F -0.14 -2.29 17.05 2.25 0.04 -2.25 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.59 7.36 -51.93 -0.38 1.20 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.10 2.41 5.62 -51.93 -0.29 2.12 16 33 H 0.09 2.14 6.87 -51.93 -0.36 1.78 16 34 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 35 H 0.41 8.36 6.85 -40.82 -0.28 8.08 16 36 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -28.27 332.76 -9.66 -37.93 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.61 Total: 12.63 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.99 Total: -1.67 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.29 Total: -41.52 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: -18.44 SS G_CDS: -2.39 Total: -20.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.27 -9.66 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247067786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.092 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds