Wall clock time and date at job start Fri Apr 10 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30177 * 126.80442 * 2 1 4 4 O 1.20918 * 111.60541 * 180.25129 * 3 2 1 5 5 C 1.34043 * 111.56581 * 359.75239 * 4 3 2 6 6 C 1.50700 * 126.77147 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.44937 * 359.97438 * 5 4 3 8 8 S 1.76201 * 128.00979 * 179.97438 * 7 5 4 9 9 O 1.42102 * 106.39853 * 336.46102 * 8 7 5 10 10 O 1.42097 * 106.40189 * 203.54165 * 8 7 5 11 11 N 1.65599 * 107.21732 * 89.99990 * 8 7 5 12 12 C 1.46497 * 119.99850 * 65.00050 * 11 8 7 13 13 H 1.08999 * 109.35782 * 334.82271 * 12 11 8 14 14 C 1.52961 * 109.41259 * 94.64750 * 12 11 8 15 15 C 1.53230 * 109.40365 * 183.69926 * 14 12 11 16 16 C 1.51260 * 108.53917 * 305.37305 * 15 14 12 17 17 C 1.37875 * 120.85050 * 231.37111 * 16 15 14 18 18 N 1.31522 * 120.00196 * 179.97438 * 17 16 15 19 19 Si 1.86798 * 120.00044 * 359.97310 * 17 16 15 20 20 H 1.48503 * 109.47089 * 90.00490 * 19 17 16 21 21 H 1.48499 * 109.47177 * 210.00087 * 19 17 16 22 22 H 1.48500 * 109.47160 * 330.00824 * 19 17 16 23 23 C 1.51270 * 118.30223 * 51.34701 * 16 15 14 24 24 C 1.52966 * 109.41300 * 214.99693 * 12 11 8 25 25 H 1.08997 * 109.46748 * 270.16151 * 1 2 3 26 26 H 1.09000 * 109.47202 * 30.16409 * 1 2 3 27 27 H 1.09002 * 109.46946 * 150.15776 * 1 2 3 28 28 H 1.08994 * 109.47390 * 269.99722 * 6 5 4 29 29 H 1.08993 * 109.47135 * 30.00422 * 6 5 4 30 30 H 1.09008 * 109.46931 * 149.99776 * 6 5 4 31 31 H 0.97002 * 119.99498 * 245.00100 * 11 8 7 32 32 H 1.08994 * 109.48380 * 303.68440 * 14 12 11 33 33 H 1.09008 * 109.48138 * 63.72196 * 14 12 11 34 34 H 1.09005 * 109.62486 * 185.65658 * 15 14 12 35 35 H 1.08997 * 109.78109 * 65.18357 * 15 14 12 36 36 H 0.96999 * 119.99721 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.63158 * 188.93751 * 23 16 15 38 38 H 1.09000 * 109.62411 * 68.36822 * 23 16 15 39 39 H 1.08997 * 109.48191 * 296.28260 * 24 12 11 40 40 H 1.09001 * 109.48001 * 56.30510 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0036 6 6 4.9022 -1.3695 -0.0090 7 6 2.3540 -1.1321 0.0036 8 16 1.8922 -2.8325 0.0081 9 8 2.9903 -3.5478 -0.5413 10 8 0.5782 -2.8928 -0.5294 11 7 1.7721 -3.3037 1.5911 12 6 0.7443 -2.7163 2.4541 13 1 0.4702 -1.7331 2.0718 14 6 -0.4894 -3.6204 2.4632 15 6 -1.5975 -2.9612 3.2911 16 6 -1.0477 -2.6432 4.6639 17 6 -1.7145 -3.0430 5.8026 18 7 -1.2210 -2.7580 6.9879 19 14 -3.3187 -3.9895 5.6618 20 1 -3.0320 -5.4460 5.6181 21 1 -4.1756 -3.6889 6.8368 22 1 -4.0238 -3.5864 4.4186 23 6 0.2526 -1.8758 4.7556 24 6 1.2937 -2.5744 3.8747 25 1 -0.3633 0.0029 1.0277 26 1 -0.3633 0.8885 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 5.2103 -1.5551 -1.0378 29 1 5.6685 -0.7851 0.5001 30 1 4.7677 -2.3202 0.5071 31 1 2.3823 -3.9686 1.9468 32 1 -0.8386 -3.7692 1.4415 33 1 -0.2310 -4.5837 2.9032 34 1 -2.4413 -3.6451 3.3840 35 1 -1.9235 -2.0415 2.8053 36 1 -1.6903 -3.0390 7.7890 37 1 0.5978 -1.8623 5.7895 38 1 0.1010 -0.8553 4.4040 39 1 1.5099 -3.5623 4.2812 40 1 2.2084 -1.9820 3.8532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258731087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:41 Heat of formation + Delta-G solvation = -35.395837 kcal Electronic energy + Delta-G solvation = -25546.466203 eV Core-core repulsion = 21876.819507 eV Total energy + Delta-G solvation = -3669.646696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.17107 -37.72154 -37.09695 -35.83402 -35.05817 -33.79831 -33.73864 -31.33344 -29.71473 -28.77449 -28.13462 -26.94465 -24.01655 -22.17868 -21.58068 -20.71346 -19.72387 -19.34471 -18.17596 -17.86999 -17.24114 -16.32196 -16.05865 -15.78150 -14.76529 -14.48008 -14.34091 -13.65714 -13.59234 -13.40764 -13.21304 -13.00248 -12.89403 -12.65364 -12.55919 -12.42951 -12.22439 -12.05626 -11.91461 -11.68133 -11.48373 -11.19516 -11.08969 -10.92601 -10.72896 -10.50009 -10.24220 -10.05396 -9.83356 -9.69376 -9.28673 -9.00993 -8.54162 -8.51540 -6.15845 -4.06997 0.41811 0.92986 1.77907 2.76045 3.15701 3.25056 3.33950 3.35707 3.72731 3.87240 4.13702 4.28521 4.34526 4.87359 4.95419 5.08391 5.11212 5.19113 5.26507 5.47633 5.56598 5.60908 5.73342 5.75198 5.88501 5.98799 6.17855 6.43445 6.52474 6.65871 6.80912 6.90256 6.97956 7.06522 7.23623 7.37210 7.59388 7.64641 7.75446 7.97881 8.31025 8.90409 9.49097 10.93552 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.004536 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.690281 B = 6171.553790 C = 6395.244647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.115 3.885 3 N -0.367 5.367 4 O 0.097 5.903 5 C 0.107 3.893 6 C -0.097 4.097 7 C -0.792 4.792 8 S 2.723 3.277 9 O -0.966 6.966 10 O -0.946 6.946 11 N -1.108 6.108 12 C 0.163 3.837 13 H 0.071 0.929 14 C -0.124 4.124 15 C -0.015 4.015 16 C -0.491 4.491 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.011 3.989 24 C -0.112 4.112 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.415 0.585 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.020 0.980 36 H 0.265 0.735 37 H 0.061 0.939 38 H 0.004 0.996 39 H 0.059 0.941 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 1.538 -12.376 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.047 4.047 3 N -0.076 5.076 4 O 0.039 5.961 5 C 0.040 3.960 6 C -0.154 4.154 7 C -0.879 4.879 8 S 2.807 3.193 9 O -0.956 6.956 10 O -0.936 6.936 11 N -0.869 5.869 12 C 0.058 3.942 13 H 0.089 0.911 14 C -0.164 4.164 15 C -0.053 4.053 16 C -0.510 4.510 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.191 1.191 23 C -0.027 4.027 24 C -0.152 4.152 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.250 0.750 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.022 0.978 39 H 0.078 0.922 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.373 2.560 -12.994 16.225 hybrid contribution -0.425 -0.834 0.581 1.101 sum 8.948 1.726 -12.413 15.399 Atomic orbital electron populations 1.20751 0.84674 1.05922 1.05348 1.23177 0.98974 0.85889 0.96673 1.73826 0.88772 1.23538 1.21418 1.84843 1.22433 1.22367 1.66459 1.24518 0.97023 0.84060 0.90434 1.20819 0.89452 0.99231 1.05939 1.33057 0.99988 1.27143 1.27716 1.01134 0.73721 0.71729 0.72738 1.93557 1.54954 1.70159 1.76961 1.93564 1.37594 1.85435 1.76960 1.55719 1.45830 1.54693 1.30680 1.20917 0.86581 0.95468 0.91253 0.91053 1.22094 0.95850 0.99088 0.99363 1.19739 0.93973 0.96075 0.95545 1.20031 1.06540 1.35096 0.89334 1.24845 0.97331 0.95517 0.94905 1.69833 1.39221 1.46077 0.97516 0.86663 0.83903 0.80394 0.77440 1.20370 1.21680 1.19054 1.19368 0.92726 0.93720 0.96869 1.21959 0.98298 1.01280 0.93668 0.88478 0.89738 0.87072 0.87416 0.88547 0.87494 0.74987 0.93121 0.92323 0.94799 0.96207 0.92543 0.92047 0.97761 0.92247 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.77 36.01 0.35 -1.13 16 2 C 0.11 1.71 7.29 -82.10 -0.60 1.11 16 3 N -0.37 -5.60 12.07 33.42 0.40 -5.20 16 4 O 0.10 1.31 11.20 17.17 0.19 1.50 16 5 C 0.11 1.28 7.48 -35.31 -0.26 1.02 16 6 C -0.10 -0.78 9.65 36.01 0.35 -0.43 16 7 C -0.79 -11.04 6.19 -39.38 -0.24 -11.29 16 8 S 2.72 38.79 5.73 -107.50 -0.62 38.17 16 9 O -0.97 -14.04 16.19 -57.17 -0.93 -14.96 16 10 O -0.95 -15.70 15.01 -57.17 -0.86 -16.56 16 11 N -1.11 -15.60 5.47 -4.92 -0.03 -15.62 16 12 C 0.16 2.83 2.55 -67.97 -0.17 2.65 16 13 H 0.07 1.23 6.63 -51.93 -0.34 0.89 16 14 C -0.12 -2.39 5.54 -26.63 -0.15 -2.54 16 15 C -0.02 -0.33 5.59 -27.49 -0.15 -0.49 16 16 C -0.49 -12.23 5.51 -98.93 -0.55 -12.77 16 17 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 18 N -0.89 -24.65 12.73 55.43 0.71 -23.95 16 19 Si 0.89 20.47 27.27 -169.99 -4.64 15.83 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -5.95 6.46 56.52 0.37 -5.58 16 23 C 0.01 0.26 5.97 -27.49 -0.16 0.10 16 24 C -0.11 -2.14 5.46 -26.63 -0.15 -2.28 16 25 H 0.10 1.31 7.50 -51.93 -0.39 0.92 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.11 1.52 6.11 -51.93 -0.32 1.21 16 28 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.11 0.84 7.08 -51.92 -0.37 0.48 16 31 H 0.42 4.87 8.83 -34.47 -0.30 4.56 16 32 H 0.05 0.92 7.55 -51.93 -0.39 0.53 16 33 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -30.75 331.81 -7.88 -38.63 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.28 Total: 1.28 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.83 Total: -24.12 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 1.08 Total: -44.77 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.59 Total: -30.02 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.64 Total: 15.83 kcal Atomic # 16 Polarization: 38.79 SS G_CDS: -0.62 Total: 38.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.75 -7.88 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258731087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.232 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds