Wall clock time and date at job start Fri Apr 10 2020 22:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47376 * 2 1 4 4 C 1.50709 * 109.47127 * 119.99864 * 2 1 3 5 5 O 1.20825 * 119.99474 * 119.99685 * 4 2 1 6 6 O 1.34220 * 119.99698 * 300.00161 * 4 2 1 7 7 C 1.45202 * 116.99746 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47248 * 180.02562 * 7 6 4 9 9 O 1.42900 * 109.47182 * 65.00138 * 8 7 6 10 10 C 1.42895 * 114.00300 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47463 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00177 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00127 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99819 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00075 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46857 * 60.00086 * 15 13 11 17 17 H 1.48496 * 109.47205 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47193 * 300.00178 * 15 13 11 19 19 C 1.50699 * 109.47371 * 239.99820 * 2 1 3 20 20 C 1.38239 * 119.98900 * 300.00384 * 19 2 1 21 21 C 1.38185 * 120.04975 * 179.97438 * 20 19 2 22 22 C 1.38492 * 120.02814 * 359.97438 * 21 20 19 23 23 F 1.35094 * 120.01186 * 179.97438 * 22 21 20 24 24 C 1.38400 * 119.97170 * 359.97438 * 22 21 20 25 25 C 1.38437 * 119.95192 * 359.97438 * 24 22 21 26 26 F 1.35097 * 120.01171 * 179.97438 * 25 24 22 27 27 H 1.08994 * 109.46975 * 299.99828 * 1 2 3 28 28 H 1.09003 * 109.46638 * 60.00317 * 1 2 3 29 29 H 1.09005 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46897 * 300.00060 * 7 6 4 31 31 H 1.08995 * 109.47307 * 59.99633 * 7 6 4 32 32 H 1.08997 * 109.46767 * 185.00098 * 8 7 6 33 33 H 1.08996 * 109.46845 * 304.99763 * 8 7 6 34 34 H 1.09000 * 109.46987 * 300.00093 * 10 9 8 35 35 H 1.09002 * 109.47278 * 59.99378 * 10 9 8 36 36 H 0.97004 * 119.99863 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.96696 * 0.26981 * 20 19 2 38 38 H 1.07998 * 119.98121 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.02143 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 1.7547 -0.3197 4.8835 9 8 0.3329 -0.4240 4.9817 10 6 -0.2134 0.1710 6.1605 11 6 -1.7111 0.0039 6.1597 12 1 -2.1972 -0.5054 5.3407 13 6 -2.4609 0.5020 7.2040 14 7 -1.8691 1.1235 8.2006 15 14 -4.3175 0.2955 7.2027 16 1 -4.6545 -1.1505 7.1768 17 1 -4.8853 0.9148 8.4271 18 1 -4.8884 0.9585 6.0029 19 6 2.0324 -0.7104 -1.2304 20 6 1.6983 -2.0339 -1.4490 21 6 2.1578 -2.6864 -2.5770 22 6 2.9534 -2.0149 -3.4904 23 9 3.4029 -2.6532 -4.5928 24 6 3.2876 -0.6895 -3.2731 25 6 2.8258 -0.0365 -2.1432 26 9 3.1518 1.2571 -1.9296 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8625 -2.0131 3.5565 31 1 3.3162 -0.9861 3.5569 32 1 2.2154 -0.8167 5.7372 33 1 2.0424 0.7316 4.8764 34 1 0.2064 -0.3154 7.0410 35 1 0.0334 1.2325 6.1796 36 1 -2.3966 1.4737 8.9356 37 1 1.0737 -2.5568 -0.7398 38 1 1.8958 -3.7203 -2.7469 39 1 3.9076 -0.1649 -3.9850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324490600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:51 Heat of formation + Delta-G solvation = -206.284311 kcal Electronic energy + Delta-G solvation = -25220.980618 eV Core-core repulsion = 20957.790504 eV Total energy + Delta-G solvation = -4263.190114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.39034 -49.35427 -40.77040 -39.16943 -37.12311 -36.07818 -34.54812 -32.79407 -31.20451 -30.28078 -29.35076 -26.98062 -25.28266 -23.70155 -23.16422 -22.41341 -21.88712 -20.44564 -18.63170 -18.01052 -17.25641 -16.90689 -16.56091 -16.40630 -16.29512 -15.96499 -15.71291 -15.61745 -15.24975 -14.83042 -14.70700 -14.42844 -14.29179 -13.75025 -13.42969 -13.17323 -12.90188 -12.74413 -12.56686 -12.21604 -12.10392 -11.97564 -11.61693 -11.46278 -11.43815 -10.97168 -10.86844 -10.78577 -10.43659 -10.34529 -10.07647 -9.42565 -9.17344 -9.02598 -8.90308 -8.24366 -6.14441 -4.16427 0.51235 0.65363 2.17114 2.59526 3.08120 3.29981 3.32913 3.36438 3.47146 3.94510 4.07276 4.17993 4.29482 4.44637 4.63598 4.68159 4.78207 4.83441 4.93817 5.17928 5.22076 5.33844 5.40868 5.44008 5.51515 5.52504 5.60302 5.67533 5.82534 5.85419 5.90528 6.02121 6.06257 6.35957 6.52653 7.02378 7.36767 7.74113 7.76183 8.09559 8.48920 8.95523 9.48346 10.97023 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.002407 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.179228 B =11628.921736 C =11944.389261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 H 0.122 0.878 4 C 0.466 3.534 5 O -0.509 6.509 6 O -0.335 6.335 7 C 0.074 3.926 8 C 0.061 3.939 9 O -0.391 6.391 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.117 4.117 20 C -0.027 4.027 21 C -0.162 4.162 22 C 0.131 3.869 23 F -0.132 7.132 24 C -0.194 4.194 25 C 0.141 3.859 26 F -0.127 7.127 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 -3.638 -22.069 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 H 0.140 0.860 4 C 0.309 3.691 5 O -0.398 6.398 6 O -0.251 6.251 7 C 0.001 3.999 8 C -0.016 4.016 9 O -0.311 6.311 10 C 0.121 3.879 11 C -0.554 4.554 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.118 4.118 20 C -0.045 4.045 21 C -0.181 4.181 22 C 0.112 3.888 23 F -0.110 7.110 24 C -0.214 4.214 25 C 0.121 3.879 26 F -0.106 7.106 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.083 -3.900 -22.041 24.549 hybrid contribution -0.370 0.122 0.271 0.474 sum 9.713 -3.778 -21.770 24.136 Atomic orbital electron populations 1.21839 0.89953 1.03735 1.04506 1.19833 0.99274 1.00509 0.86703 0.86039 1.23320 0.77516 0.82935 0.85355 1.90660 1.35722 1.25894 1.87491 1.86588 1.69092 1.55029 1.14365 1.23248 0.97881 0.96332 0.82459 1.22321 0.86325 0.99587 0.93400 1.87907 1.16326 1.80369 1.46454 1.20231 0.94091 0.92237 0.81378 1.20997 0.90596 1.37146 1.06666 0.91562 1.24953 0.99493 0.94980 0.95065 1.69951 1.36163 1.37786 1.09854 0.86380 0.84038 0.78539 0.77437 1.20010 1.21146 1.19960 1.19462 1.00766 0.95444 0.96165 1.20746 0.96220 0.92270 0.95299 1.21197 1.00348 1.01729 0.94817 1.17309 0.96700 0.90232 0.84588 1.91533 1.87315 1.81524 1.50670 1.20942 1.06086 0.94642 0.99709 1.17029 0.96959 0.79111 0.94760 1.91529 1.90772 1.33701 1.94566 0.89433 0.90796 0.91572 0.90415 0.90408 0.91910 0.93152 0.97633 0.97489 0.92548 0.83847 0.83756 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.94 37.16 0.33 -1.06 16 2 C -0.04 -0.48 2.99 -92.92 -0.28 -0.76 16 3 H 0.12 1.20 7.12 -51.93 -0.37 0.83 16 4 C 0.47 6.49 7.13 36.01 0.26 6.75 16 5 O -0.51 -7.86 14.86 -18.75 -0.28 -8.14 16 6 O -0.34 -5.30 10.09 -41.99 -0.42 -5.72 16 7 C 0.07 1.13 5.85 37.16 0.22 1.35 16 8 C 0.06 1.09 6.33 37.16 0.24 1.32 16 9 O -0.39 -9.20 10.30 -38.79 -0.40 -9.60 16 10 C 0.19 5.23 5.69 36.00 0.20 5.44 16 11 C -0.52 -14.95 9.43 -34.44 -0.32 -15.28 16 12 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 15 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.12 -1.21 4.40 -104.54 -0.46 -1.67 16 20 C -0.03 -0.26 7.93 -39.60 -0.31 -0.57 16 21 C -0.16 -1.38 10.02 -39.51 -0.40 -1.77 16 22 C 0.13 1.18 7.30 -39.43 -0.29 0.89 16 23 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 24 C -0.19 -1.71 10.01 -39.45 -0.39 -2.11 16 25 C 0.14 1.40 7.24 -39.43 -0.29 1.11 16 26 F -0.13 -1.31 16.19 2.25 0.04 -1.27 16 27 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.61 7.38 -51.93 -0.38 0.23 16 30 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 31 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.14 1.28 7.51 -52.49 -0.39 0.88 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -32.22 350.91 -6.53 -38.76 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.92 Total: -3.99 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.59 Total: -4.84 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.10 Total: -23.46 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.22 -6.53 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324490600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.528 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds