Wall clock time and date at job start Fri Apr 10 2020 22:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47376 * 2 1 4 4 C 1.50709 * 109.47127 * 119.99864 * 2 1 3 5 5 O 1.20825 * 119.99474 * 119.99685 * 4 2 1 6 6 O 1.34220 * 119.99698 * 300.00161 * 4 2 1 7 7 C 1.45202 * 116.99746 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47248 * 180.02562 * 7 6 4 9 9 O 1.42900 * 109.47182 * 65.00138 * 8 7 6 10 10 C 1.42895 * 114.00300 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47463 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00177 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00127 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99819 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00075 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46857 * 60.00086 * 15 13 11 17 17 H 1.48496 * 109.47205 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47193 * 300.00178 * 15 13 11 19 19 C 1.50699 * 109.47371 * 239.99820 * 2 1 3 20 20 C 1.38239 * 119.98900 * 300.00384 * 19 2 1 21 21 C 1.38185 * 120.04975 * 179.97438 * 20 19 2 22 22 C 1.38492 * 120.02814 * 359.97438 * 21 20 19 23 23 F 1.35094 * 120.01186 * 179.97438 * 22 21 20 24 24 C 1.38400 * 119.97170 * 359.97438 * 22 21 20 25 25 C 1.38437 * 119.95192 * 359.97438 * 24 22 21 26 26 F 1.35097 * 120.01171 * 179.97438 * 25 24 22 27 27 H 1.08994 * 109.46975 * 299.99828 * 1 2 3 28 28 H 1.09003 * 109.46638 * 60.00317 * 1 2 3 29 29 H 1.09005 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46897 * 300.00060 * 7 6 4 31 31 H 1.08995 * 109.47307 * 59.99633 * 7 6 4 32 32 H 1.08997 * 109.46767 * 185.00098 * 8 7 6 33 33 H 1.08996 * 109.46845 * 304.99763 * 8 7 6 34 34 H 1.09000 * 109.46987 * 300.00093 * 10 9 8 35 35 H 1.09002 * 109.47278 * 59.99378 * 10 9 8 36 36 H 0.97004 * 119.99863 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.96696 * 0.26981 * 20 19 2 38 38 H 1.07998 * 119.98121 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.02143 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 1.7547 -0.3197 4.8835 9 8 0.3329 -0.4240 4.9817 10 6 -0.2134 0.1710 6.1605 11 6 -1.7111 0.0039 6.1597 12 1 -2.1972 -0.5054 5.3407 13 6 -2.4609 0.5020 7.2040 14 7 -1.8691 1.1235 8.2006 15 14 -4.3175 0.2955 7.2027 16 1 -4.6545 -1.1505 7.1768 17 1 -4.8853 0.9148 8.4271 18 1 -4.8884 0.9585 6.0029 19 6 2.0324 -0.7104 -1.2304 20 6 1.6983 -2.0339 -1.4490 21 6 2.1578 -2.6864 -2.5770 22 6 2.9534 -2.0149 -3.4904 23 9 3.4029 -2.6532 -4.5928 24 6 3.2876 -0.6895 -3.2731 25 6 2.8258 -0.0365 -2.1432 26 9 3.1518 1.2571 -1.9296 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8625 -2.0131 3.5565 31 1 3.3162 -0.9861 3.5569 32 1 2.2154 -0.8167 5.7372 33 1 2.0424 0.7316 4.8764 34 1 0.2064 -0.3154 7.0410 35 1 0.0334 1.2325 6.1796 36 1 -2.3966 1.4737 8.9356 37 1 1.0737 -2.5568 -0.7398 38 1 1.8958 -3.7203 -2.7469 39 1 3.9076 -0.1649 -3.9850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324490600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:50 Heat of formation + Delta-G solvation = -223.604056 kcal Electronic energy + Delta-G solvation = -25221.731659 eV Core-core repulsion = 20957.790504 eV Total energy + Delta-G solvation = -4263.941154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.14927 -50.06276 -41.84056 -40.00318 -38.71972 -37.44190 -35.40752 -34.92663 -31.92028 -31.68634 -30.20147 -29.00678 -26.19118 -24.67087 -24.42965 -24.01838 -23.09648 -21.43652 -19.37508 -18.94474 -18.68812 -18.21251 -17.88620 -17.71391 -17.09967 -17.03193 -16.72756 -16.55247 -16.40230 -16.36707 -16.02541 -15.55794 -15.24605 -15.10002 -14.64677 -14.22018 -13.90297 -13.83995 -13.72399 -13.41422 -13.25388 -13.01931 -12.91981 -12.83828 -12.68179 -12.46875 -12.34879 -12.24366 -11.98031 -11.73468 -11.42952 -11.28501 -10.88109 -10.26569 -10.12650 -9.75933 -8.31284 -6.43463 -0.22453 -0.04472 1.07564 1.41706 1.46077 1.54461 1.57409 2.31816 2.35270 2.75626 3.02823 3.06105 3.15300 3.33479 3.44803 3.65471 3.83884 3.92109 3.97102 4.02260 4.10837 4.20699 4.41396 4.49531 4.60960 4.67004 4.72882 4.79100 4.82698 4.84630 4.86391 4.97785 5.14622 5.18224 5.23760 5.37905 5.55099 5.66846 5.95880 6.50049 6.63501 6.80041 7.28046 8.80640 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.002407 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.179228 B =11628.921736 C =11944.389261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 H 0.130 0.870 4 C 0.466 3.534 5 O -0.525 6.525 6 O -0.353 6.353 7 C 0.078 3.922 8 C 0.053 3.947 9 O -0.406 6.406 10 C 0.208 3.792 11 C -0.549 4.549 12 H 0.062 0.938 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.265 1.265 19 C -0.126 4.126 20 C -0.035 4.035 21 C -0.156 4.156 22 C 0.126 3.874 23 F -0.133 7.133 24 C -0.191 4.191 25 C 0.131 3.869 26 F -0.132 7.132 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.055 0.945 34 H -0.009 1.009 35 H -0.011 1.011 36 H 0.271 0.729 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.469 -4.106 -23.277 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 H 0.148 0.852 4 C 0.310 3.690 5 O -0.415 6.415 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.024 4.024 9 O -0.327 6.327 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.127 4.127 20 C -0.053 4.053 21 C -0.175 4.175 22 C 0.107 3.893 23 F -0.112 7.112 24 C -0.210 4.210 25 C 0.112 3.888 26 F -0.110 7.110 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.009 0.991 35 H 0.007 0.993 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.183 0.817 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.571 -4.371 -23.265 25.534 hybrid contribution -0.089 0.249 0.601 0.656 sum 9.483 -4.122 -22.665 24.912 Atomic orbital electron populations 1.21831 0.89160 1.04017 1.04681 1.19886 0.99850 1.00588 0.85489 0.85238 1.23896 0.76960 0.82786 0.85348 1.90643 1.36530 1.26711 1.87581 1.86586 1.69623 1.55497 1.15184 1.23201 0.99328 0.95588 0.81386 1.22640 0.83345 1.00649 0.95737 1.87852 1.19869 1.80042 1.44890 1.19861 0.93682 0.91058 0.82075 1.21353 0.91938 1.38147 1.07232 0.91969 1.25948 1.04968 0.94024 0.94255 1.70058 1.38344 1.38083 1.10423 0.85250 0.77266 0.79001 0.78021 1.19030 1.20099 1.18924 1.19481 1.01357 0.95891 0.95988 1.20844 0.96571 0.92110 0.95817 1.21410 0.99417 1.02605 0.94044 1.17402 0.96896 0.90381 0.84671 1.91533 1.87359 1.81545 1.50752 1.21115 1.05684 0.94666 0.99524 1.17102 0.97399 0.79080 0.95242 1.91516 1.90872 1.33983 1.94646 0.91104 0.88685 0.91280 0.90705 0.87547 0.90109 0.92650 0.99122 0.99344 0.92033 0.83569 0.81740 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.94 71.98 0.64 -1.97 16 2 C -0.04 -0.82 2.99 -12.28 -0.04 -0.86 16 3 H 0.13 2.47 7.12 -2.39 -0.02 2.46 16 4 C 0.47 12.72 7.13 71.24 0.51 13.23 16 5 O -0.53 -15.81 14.86 21.97 0.33 -15.49 16 6 O -0.35 -11.05 10.09 -48.68 -0.49 -11.54 16 7 C 0.08 2.33 5.85 71.98 0.42 2.75 16 8 C 0.05 1.87 6.33 71.98 0.46 2.33 16 9 O -0.41 -19.44 10.30 -145.58 -1.50 -20.94 16 10 C 0.21 11.47 5.69 71.23 0.41 11.87 16 11 C -0.55 -32.26 9.43 25.60 0.24 -32.01 16 12 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 15 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 C -0.13 -2.45 4.40 -19.81 -0.09 -2.54 16 20 C -0.04 -0.62 7.93 22.26 0.18 -0.45 16 21 C -0.16 -2.37 10.02 22.32 0.22 -2.15 16 22 C 0.13 2.05 7.30 22.37 0.16 2.21 16 23 F -0.13 -2.25 17.27 44.97 0.78 -1.47 16 24 C -0.19 -3.05 10.01 22.36 0.22 -2.83 16 25 C 0.13 2.44 7.24 22.37 0.16 2.60 16 26 F -0.13 -2.57 16.19 44.97 0.73 -1.84 16 27 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.23 7.38 -2.38 -0.02 1.21 16 30 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 31 H 0.11 2.57 8.13 -2.39 -0.02 2.55 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.27 14.93 8.31 -92.71 -0.77 14.15 16 37 H 0.15 2.45 7.51 -2.91 -0.02 2.43 16 38 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -68.46 350.91 7.18 -61.28 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.07 Total: 6.19 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 3.96 Total: -6.96 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.28 Total: -54.88 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.66 Total: -47.97 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 1.50 Total: -3.32 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.46 7.18 -61.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324490600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.322 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds