Wall clock time and date at job start Fri Apr 10 2020 22:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00328 * 2 1 4 4 H 1.48501 * 109.47262 * 270.00614 * 3 2 1 5 5 H 1.48509 * 109.46752 * 30.00425 * 3 2 1 6 6 H 1.48491 * 109.47191 * 150.00082 * 3 2 1 7 7 C 1.37877 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00499 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99877 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.36157 * 124.84739 * 264.97630 * 10 9 7 12 12 C 1.36206 * 109.69308 * 180.02562 * 11 10 9 13 13 C 1.46997 * 126.73070 * 180.02562 * 12 11 10 14 14 N 1.30096 * 120.00367 * 179.97438 * 13 12 11 15 15 N 1.40100 * 120.00191 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99813 * 179.97438 * 15 14 13 17 17 O 1.21493 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.49104 * 120.00078 * 179.97438 * 16 15 14 19 19 N 1.34774 * 120.00078 * 179.97438 * 18 16 15 20 20 O 1.21391 * 119.99702 * 0.02562 * 18 16 15 21 21 C 1.47398 * 106.53936 * 359.74462 * 12 11 10 22 22 C 1.39327 * 133.93083 * 179.50099 * 21 12 11 23 23 C 1.37734 * 119.67439 * 180.47654 * 22 21 12 24 24 C 1.38780 * 120.31682 * 0.25965 * 23 22 21 25 25 C 1.37744 * 120.63533 * 359.97438 * 24 23 22 26 26 C 1.37900 * 124.84921 * 85.00246 * 10 9 7 27 27 H 0.96998 * 120.00341 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46534 * 60.00720 * 9 7 2 29 29 H 1.08992 * 109.47154 * 300.00710 * 9 7 2 30 30 H 1.07997 * 125.15677 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.00026 * 359.97121 * 13 12 11 32 32 H 0.96993 * 119.99775 * 359.97438 * 15 14 13 33 33 H 0.97004 * 119.99928 * 0.02562 * 19 18 16 34 34 H 0.96997 * 120.00006 * 180.02562 * 19 18 16 35 35 H 1.08002 * 120.16483 * 0.75887 * 22 21 12 36 36 H 1.07999 * 119.83736 * 180.28172 * 23 22 21 37 37 H 1.08002 * 119.68037 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.03311 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6342 -4.2676 -1.1137 12 6 3.5118 -5.2469 -0.7589 13 6 4.2032 -6.1774 -1.6628 14 7 5.0199 -7.0675 -1.1798 15 7 5.6793 -7.9539 -2.0413 16 6 6.5258 -8.8756 -1.5409 17 8 6.7166 -8.9381 -0.3427 18 6 7.2271 -9.8194 -2.4577 19 7 8.0740 -10.7408 -1.9574 20 8 7.0361 -9.7572 -3.6549 21 6 3.6375 -5.1863 0.7085 22 6 4.3623 -5.9171 1.6475 23 6 4.2514 -5.6081 2.9852 24 6 3.4186 -4.5782 3.3996 25 6 2.6925 -3.8506 2.4827 26 6 2.7900 -4.1475 1.1269 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8895 30 1 2.3269 -4.0444 -2.1247 31 1 4.0332 -6.1222 -2.7279 32 1 5.5266 -7.9042 -2.9979 33 1 8.2269 -10.7901 -1.0007 34 1 8.5305 -11.3545 -2.5538 35 1 5.0114 -6.7189 1.3278 36 1 4.8156 -6.1699 3.7150 37 1 3.3398 -4.3445 4.4511 38 1 2.0471 -3.0514 2.8161 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916273849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:15 Heat of formation + Delta-G solvation = 5.507587 kcal Electronic energy + Delta-G solvation = -24227.658492 eV Core-core repulsion = 20456.634302 eV Total energy + Delta-G solvation = -3771.024191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12392 -41.58056 -39.47391 -37.89800 -37.69195 -35.51163 -34.85105 -34.03160 -32.24520 -31.10587 -29.89528 -28.67651 -26.52285 -25.10554 -23.71910 -23.26961 -21.91290 -21.58938 -20.54082 -19.60257 -18.79206 -18.59991 -17.67732 -17.60056 -17.12477 -16.96138 -16.86090 -16.38896 -16.12427 -15.65547 -15.30690 -15.09802 -14.93231 -14.67637 -14.26638 -14.17035 -13.55761 -13.44334 -13.35223 -13.03786 -12.93088 -12.69484 -12.45707 -12.41358 -12.28261 -11.78294 -11.60899 -11.07044 -10.96096 -10.89055 -10.82656 -10.72500 -9.86606 -9.03487 -8.45348 -8.14832 -6.49253 -0.08738 0.30897 0.71406 1.01389 1.03113 1.37742 1.40141 1.50161 2.03376 2.14287 2.35110 2.40290 2.59038 2.98586 3.13062 3.47846 3.73192 3.86110 3.94134 4.19177 4.33664 4.38373 4.55042 4.64805 4.81700 4.92776 4.99074 5.01334 5.05576 5.26826 5.44498 5.56338 5.66081 5.77525 5.79962 5.83226 5.89505 6.01541 6.06316 6.29176 6.39199 6.47707 6.68133 6.91673 7.23043 7.26642 8.73190 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.002832 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.780896 B = 9883.319225 C =10774.401130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.249 3.751 10 N -0.456 5.456 11 C 0.127 3.873 12 C -0.199 4.199 13 C 0.194 3.806 14 N -0.297 5.297 15 N -0.553 5.553 16 C 0.518 3.482 17 O -0.519 6.519 18 C 0.531 3.469 19 N -0.793 5.793 20 O -0.546 6.546 21 C -0.097 4.097 22 C -0.081 4.081 23 C -0.148 4.148 24 C -0.108 4.108 25 C -0.136 4.136 26 C 0.068 3.932 27 H 0.272 0.728 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.205 0.795 31 H 0.161 0.839 32 H 0.404 0.596 33 H 0.424 0.576 34 H 0.427 0.573 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -16.713 -3.322 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.071 0.929 9 C 0.130 3.870 10 N -0.133 5.133 11 C -0.010 4.010 12 C -0.209 4.209 13 C -0.013 4.013 14 N -0.103 5.103 15 N -0.296 5.296 16 C 0.299 3.701 17 O -0.393 6.393 18 C 0.307 3.693 19 N -0.361 5.361 20 O -0.423 6.423 21 C -0.102 4.102 22 C -0.100 4.100 23 C -0.167 4.167 24 C -0.127 4.127 25 C -0.156 4.156 26 C -0.038 4.038 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.222 0.778 31 H 0.178 0.822 32 H 0.245 0.755 33 H 0.256 0.744 34 H 0.263 0.737 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.143 -16.697 -2.455 20.223 hybrid contribution -0.139 1.204 -0.961 1.547 sum 11.003 -15.494 -3.416 19.308 Atomic orbital electron populations 1.69988 1.07233 1.28700 1.49658 1.25659 0.95661 1.02504 0.93845 0.85466 0.78389 0.78605 0.78741 1.19321 1.20301 1.19919 1.21503 0.93284 0.91133 1.53180 0.92889 1.19364 0.87036 0.82131 0.98493 1.44630 1.36196 1.27735 1.04727 1.22562 0.94497 0.91035 0.92906 1.18275 1.08389 1.03649 0.90591 1.23800 0.89835 0.89302 0.98391 1.75298 1.10679 1.04241 1.20091 1.46448 1.42211 1.31422 1.09472 1.20160 0.79981 0.81406 0.88538 1.90797 1.62111 1.70155 1.16236 1.19445 0.80720 0.82076 0.87046 1.43334 1.43897 1.34214 1.14634 1.90840 1.64077 1.71592 1.15838 1.19249 0.99775 0.97584 0.93543 1.20708 0.98224 0.98740 0.92318 1.21181 1.00893 0.99146 0.95516 1.21033 0.96452 0.95629 0.99543 1.20307 1.03247 1.01927 0.90109 1.18634 0.98602 0.97096 0.89432 0.91905 0.93419 0.95708 0.77785 0.82244 0.75497 0.74360 0.73708 0.85614 0.83697 0.83428 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.29 21.45 0.28 -49.43 16 2 C 0.02 1.27 5.46 84.66 0.46 1.74 16 3 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.55 -28.73 9.39 25.60 0.24 -28.49 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.25 11.79 5.72 85.64 0.49 12.28 16 10 N -0.46 -18.89 2.74 -518.86 -1.42 -20.31 16 11 C 0.13 4.24 11.24 83.55 0.94 5.17 16 12 C -0.20 -6.52 6.27 -19.04 -0.12 -6.64 16 13 C 0.19 5.04 10.99 87.25 0.96 6.00 16 14 N -0.30 -8.72 9.82 -52.37 -0.51 -9.24 16 15 N -0.55 -13.39 6.26 -174.66 -1.09 -14.48 16 16 C 0.52 12.62 8.00 87.16 0.70 13.32 16 17 O -0.52 -15.45 16.81 -3.69 -0.06 -15.51 16 18 C 0.53 9.88 8.15 87.16 0.71 10.59 16 19 N -0.79 -8.06 8.87 -174.74 -1.55 -9.61 16 20 O -0.55 -12.42 17.31 -3.38 -0.06 -12.48 16 21 C -0.10 -3.69 6.25 -20.07 -0.13 -3.81 16 22 C -0.08 -2.88 9.81 22.41 0.22 -2.66 16 23 C -0.15 -4.64 10.03 22.28 0.22 -4.41 16 24 C -0.11 -3.46 10.01 22.28 0.22 -3.23 16 25 C -0.14 -5.29 9.97 22.37 0.22 -5.07 16 26 C 0.07 2.81 6.79 38.94 0.26 3.08 16 27 H 0.27 13.89 8.31 -92.71 -0.77 13.11 16 28 H 0.05 2.25 8.11 -2.38 -0.02 2.23 16 29 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.21 5.07 8.06 -2.91 -0.02 5.04 16 31 H 0.16 2.63 8.03 -2.91 -0.02 2.60 16 32 H 0.40 7.63 8.12 -213.33 -1.73 5.90 16 33 H 0.42 3.39 8.29 -92.71 -0.77 2.63 16 34 H 0.43 2.16 8.93 -92.71 -0.83 1.34 16 35 H 0.13 4.48 7.24 -2.91 -0.02 4.46 16 36 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -70.01 349.24 0.84 -69.17 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -2.18 Total: 20.56 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.41 Total: -2.14 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -4.30 Total: -103.06 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.12 Total: -27.99 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -70.01 0.84 -69.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916273849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.674 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds