Wall clock time and date at job start Fri Apr 10 2020 22:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 116.99781 * 2 1 4 4 C 1.38916 * 119.60536 * 180.02562 * 3 2 1 5 5 C 1.38318 * 119.18553 * 179.97438 * 4 3 2 6 6 C 1.39383 * 118.42654 * 0.02562 * 5 4 3 7 7 N 1.40074 * 120.43004 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99566 * 34.94782 * 7 6 5 9 9 O 1.21603 * 120.00207 * 355.44333 * 8 7 6 10 10 C 1.47510 * 120.00034 * 175.44828 * 8 7 6 11 11 C 1.39679 * 120.19667 * 0.02562 * 10 8 7 12 12 C 1.37827 * 119.91888 * 180.29713 * 11 10 8 13 13 C 1.38573 * 120.32333 * 359.42586 * 12 11 10 14 14 C 1.38031 * 120.39980 * 0.59557 * 13 12 11 15 15 C 1.38830 * 120.07600 * 359.68460 * 14 13 12 16 16 O 1.35518 * 120.15979 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00253 * 5.36975 * 16 15 14 18 18 H 1.08000 * 119.99933 * 354.96280 * 17 16 15 19 19 C 1.38701 * 119.99813 * 174.96187 * 17 16 15 20 20 N 1.31512 * 120.00152 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99733 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46829 * 90.00425 * 21 19 17 23 23 H 1.48499 * 109.47132 * 210.00113 * 21 19 17 24 24 H 1.48497 * 109.47349 * 330.00300 * 21 19 17 25 25 C 1.38678 * 119.14762 * 0.24996 * 6 5 4 26 26 N 1.31945 * 120.73361 * 359.47492 * 25 6 5 27 27 H 1.09009 * 109.46958 * 300.00091 * 1 2 3 28 28 H 1.09002 * 109.47468 * 59.99833 * 1 2 3 29 29 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.40583 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.78232 * 179.97438 * 5 4 3 32 32 H 0.96994 * 120.00312 * 214.95610 * 7 6 5 33 33 H 1.07999 * 120.03997 * 0.02562 * 11 10 8 34 34 H 1.08002 * 119.83520 * 179.69736 * 12 11 10 35 35 H 1.08001 * 119.80132 * 180.32508 * 13 12 11 36 36 H 1.08006 * 119.96196 * 179.70298 * 14 13 12 37 37 H 0.97008 * 120.00207 * 180.02562 * 20 19 17 38 38 H 1.07997 * 119.63282 * 179.75083 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.4330 1.2728 -0.0005 5 6 4.0518 2.5098 -0.0011 6 6 3.2524 3.6516 -0.0005 7 7 3.8350 4.9255 -0.0005 8 6 4.9850 5.1405 -0.6695 9 8 5.5604 4.2119 -1.2037 10 6 5.5457 6.5022 -0.7538 11 6 4.8886 7.5718 -0.1413 12 6 5.4144 8.8428 -0.2288 13 6 6.5994 9.0641 -0.9121 14 6 7.2597 8.0170 -1.5227 15 6 6.7419 6.7309 -1.4499 16 8 7.3891 5.7015 -2.0483 17 6 8.5874 5.9719 -2.6036 18 1 8.9531 6.9877 -2.6309 19 6 9.3507 4.9454 -3.1398 20 7 8.9052 3.7084 -3.1070 21 14 11.0108 5.3201 -3.9099 22 1 12.0693 5.2305 -2.8722 23 1 11.2897 4.3372 -4.9875 24 1 10.9932 6.6902 -4.4821 25 6 1.8729 3.5103 0.0059 26 7 1.3176 2.3134 0.0009 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0214 0.3671 -0.0014 31 1 5.1289 2.5890 -0.0011 32 1 3.4108 5.6528 0.4811 33 1 3.9672 7.4037 0.3966 34 1 4.9025 9.6696 0.2412 35 1 7.0067 10.0627 -0.9709 36 1 8.1804 8.1983 -2.0574 37 1 9.4391 2.9904 -3.4817 38 1 1.2460 4.3898 0.0104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919805288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:18 Heat of formation + Delta-G solvation = -20.590797 kcal Electronic energy + Delta-G solvation = -24930.375347 eV Core-core repulsion = 21125.926695 eV Total energy + Delta-G solvation = -3804.448652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74784 -39.69955 -38.57862 -37.38568 -36.44796 -34.32938 -32.42909 -32.18679 -30.92959 -29.14702 -28.95049 -27.14009 -25.48111 -23.82599 -23.47259 -22.40858 -21.39630 -20.04775 -18.45771 -18.22106 -17.94086 -16.86514 -16.73885 -16.14857 -15.90838 -14.78956 -14.69393 -14.52037 -14.42587 -14.30503 -14.08610 -13.86624 -13.58469 -13.27572 -13.09765 -12.87079 -12.62811 -12.44432 -11.87271 -11.78890 -11.47460 -11.27765 -11.21850 -10.97272 -10.88615 -10.51676 -10.28652 -9.77812 -9.66068 -9.38989 -8.95564 -8.89853 -8.40758 -7.75077 -7.40275 -6.52942 -4.12638 1.18913 1.40173 1.65171 2.22739 3.07523 3.08483 3.11923 3.13294 3.42790 3.50707 3.86938 3.94146 4.38787 4.52189 4.96370 4.98310 5.06188 5.11969 5.15980 5.25886 5.31415 5.39547 5.45543 5.54194 5.64531 5.74694 5.86733 5.96514 6.02403 6.27324 6.44195 6.48314 6.57765 6.80723 6.89956 6.96573 7.13675 7.20485 7.32300 7.59135 7.75690 7.87584 7.90578 8.79737 8.87569 9.56602 10.60509 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003715 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.457886 B = 7534.433176 C = 9449.519249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.290 3.710 4 C -0.166 4.166 5 C -0.044 4.044 6 C 0.082 3.918 7 N -0.678 5.678 8 C 0.554 3.446 9 O -0.484 6.484 10 C -0.231 4.231 11 C -0.036 4.036 12 C -0.229 4.229 13 C -0.048 4.048 14 C -0.236 4.236 15 C 0.190 3.810 16 O -0.122 6.122 17 C -0.404 4.404 18 H 0.095 0.905 19 C 0.046 3.954 20 N -0.830 5.830 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.266 1.266 25 C 0.103 3.897 26 N -0.524 5.524 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.405 0.595 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.273 0.727 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 1.635 7.218 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.219 6.219 3 C 0.111 3.889 4 C -0.187 4.187 5 C -0.071 4.071 6 C -0.016 4.016 7 N -0.327 5.327 8 C 0.345 3.655 9 O -0.356 6.356 10 C -0.236 4.236 11 C -0.055 4.055 12 C -0.249 4.249 13 C -0.067 4.067 14 C -0.255 4.255 15 C 0.130 3.870 16 O -0.020 6.020 17 C -0.479 4.479 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.461 5.461 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.190 1.190 25 C -0.056 4.056 26 N -0.247 5.247 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.161 0.839 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.951 0.122 6.643 13.674 hybrid contribution 1.200 0.948 -0.191 1.541 sum -10.751 1.070 6.452 12.584 Atomic orbital electron populations 1.22782 0.77826 1.02497 1.02218 1.86236 1.22411 1.24665 1.88545 1.19744 0.89394 0.84458 0.95343 1.21037 0.91610 0.99395 1.06615 1.21765 1.02356 0.89700 0.93286 1.18632 0.92706 0.86434 1.03784 1.43442 1.26300 1.09259 1.53664 1.18416 0.79526 0.89547 0.77962 1.90939 1.57582 1.43453 1.43665 1.18634 0.99910 0.92427 1.12633 1.20758 0.97047 0.92194 0.95515 1.20471 0.99512 0.96328 1.08547 1.20930 0.93937 0.97737 0.94064 1.21173 1.03904 0.92326 1.08079 1.19230 0.90549 0.88118 0.89109 1.84151 1.29991 1.30333 1.57496 1.21518 0.92914 0.95646 1.37866 0.88752 1.25397 0.99577 0.94411 0.96878 1.70111 1.37122 0.99373 1.39475 0.85713 0.80147 0.78772 0.78819 1.19668 1.20066 1.19022 1.22089 0.90777 0.94121 0.98565 1.67178 1.40227 0.98297 1.18999 0.92581 0.92522 0.89016 0.83928 0.82103 0.75836 0.86960 0.87104 0.87044 0.84949 0.91718 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.28 10.48 -18.96 -0.20 -4.48 16 3 C 0.29 4.40 7.49 -17.14 -0.13 4.27 16 4 C -0.17 -2.56 10.03 -39.30 -0.39 -2.95 16 5 C -0.04 -0.75 8.80 -39.13 -0.34 -1.09 16 6 C 0.08 1.29 6.32 -83.50 -0.53 0.76 16 7 N -0.68 -10.52 5.30 -10.69 -0.06 -10.57 16 8 C 0.55 11.46 7.62 -12.48 -0.10 11.37 16 9 O -0.48 -12.35 12.64 -16.58 -0.21 -12.56 16 10 C -0.23 -4.72 5.89 -104.82 -0.62 -5.33 16 11 C -0.04 -0.58 9.53 -39.19 -0.37 -0.95 16 12 C -0.23 -3.51 10.02 -39.61 -0.40 -3.90 16 13 C -0.05 -0.80 10.03 -39.53 -0.40 -1.20 16 14 C -0.24 -4.82 9.16 -39.44 -0.36 -5.18 16 15 C 0.19 4.50 6.66 -38.60 -0.26 4.24 16 16 O -0.12 -3.46 7.84 -21.06 -0.17 -3.62 16 17 C -0.40 -11.04 9.49 30.90 0.29 -10.75 16 18 H 0.10 2.34 5.20 -52.49 -0.27 2.06 16 19 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 20 N -0.83 -24.29 13.67 55.48 0.76 -23.53 16 21 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 C 0.10 1.40 11.11 -17.34 -0.19 1.21 16 26 N -0.52 -7.67 9.20 -13.17 -0.12 -7.79 16 27 H 0.06 0.54 8.10 -51.92 -0.42 0.12 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.16 3.12 6.32 -52.49 -0.33 2.79 16 32 H 0.41 4.69 6.87 -40.82 -0.28 4.41 16 33 H 0.11 1.30 6.41 -52.49 -0.34 0.96 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -33.74 333.36 -6.44 -40.18 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.61 Total: 9.29 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.84 Total: -6.89 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.58 Total: -41.89 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.57 Total: -20.67 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.74 -6.44 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919805288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.590 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds