Wall clock time and date at job start Fri Apr 10 2020 22:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 116.99781 * 2 1 4 4 C 1.38916 * 119.60536 * 180.02562 * 3 2 1 5 5 C 1.38318 * 119.18553 * 179.97438 * 4 3 2 6 6 C 1.39383 * 118.42654 * 0.02562 * 5 4 3 7 7 N 1.40074 * 120.43004 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99566 * 34.94782 * 7 6 5 9 9 O 1.21603 * 120.00207 * 355.44333 * 8 7 6 10 10 C 1.47510 * 120.00034 * 175.44828 * 8 7 6 11 11 C 1.39679 * 120.19667 * 0.02562 * 10 8 7 12 12 C 1.37827 * 119.91888 * 180.29713 * 11 10 8 13 13 C 1.38573 * 120.32333 * 359.42586 * 12 11 10 14 14 C 1.38031 * 120.39980 * 0.59557 * 13 12 11 15 15 C 1.38830 * 120.07600 * 359.68460 * 14 13 12 16 16 O 1.35518 * 120.15979 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00253 * 5.36975 * 16 15 14 18 18 H 1.08000 * 119.99933 * 354.96280 * 17 16 15 19 19 C 1.38701 * 119.99813 * 174.96187 * 17 16 15 20 20 N 1.31512 * 120.00152 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99733 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46829 * 90.00425 * 21 19 17 23 23 H 1.48499 * 109.47132 * 210.00113 * 21 19 17 24 24 H 1.48497 * 109.47349 * 330.00300 * 21 19 17 25 25 C 1.38678 * 119.14762 * 0.24996 * 6 5 4 26 26 N 1.31945 * 120.73361 * 359.47492 * 25 6 5 27 27 H 1.09009 * 109.46958 * 300.00091 * 1 2 3 28 28 H 1.09002 * 109.47468 * 59.99833 * 1 2 3 29 29 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.40583 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.78232 * 179.97438 * 5 4 3 32 32 H 0.96994 * 120.00312 * 214.95610 * 7 6 5 33 33 H 1.07999 * 120.03997 * 0.02562 * 11 10 8 34 34 H 1.08002 * 119.83520 * 179.69736 * 12 11 10 35 35 H 1.08001 * 119.80132 * 180.32508 * 13 12 11 36 36 H 1.08006 * 119.96196 * 179.70298 * 14 13 12 37 37 H 0.97008 * 120.00207 * 180.02562 * 20 19 17 38 38 H 1.07997 * 119.63282 * 179.75083 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.4330 1.2728 -0.0005 5 6 4.0518 2.5098 -0.0011 6 6 3.2524 3.6516 -0.0005 7 7 3.8350 4.9255 -0.0005 8 6 4.9850 5.1405 -0.6695 9 8 5.5604 4.2119 -1.2037 10 6 5.5457 6.5022 -0.7538 11 6 4.8886 7.5718 -0.1413 12 6 5.4144 8.8428 -0.2288 13 6 6.5994 9.0641 -0.9121 14 6 7.2597 8.0170 -1.5227 15 6 6.7419 6.7309 -1.4499 16 8 7.3891 5.7015 -2.0483 17 6 8.5874 5.9719 -2.6036 18 1 8.9531 6.9877 -2.6309 19 6 9.3507 4.9454 -3.1398 20 7 8.9052 3.7084 -3.1070 21 14 11.0108 5.3201 -3.9099 22 1 12.0693 5.2305 -2.8722 23 1 11.2897 4.3372 -4.9875 24 1 10.9932 6.6902 -4.4821 25 6 1.8729 3.5103 0.0059 26 7 1.3176 2.3134 0.0009 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0214 0.3671 -0.0014 31 1 5.1289 2.5890 -0.0011 32 1 3.4108 5.6528 0.4811 33 1 3.9672 7.4037 0.3966 34 1 4.9025 9.6696 0.2412 35 1 7.0067 10.0627 -0.9709 36 1 8.1804 8.1983 -2.0574 37 1 9.4391 2.9904 -3.4817 38 1 1.2460 4.3898 0.0104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919805288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:17 Heat of formation + Delta-G solvation = -45.716563 kcal Electronic energy + Delta-G solvation = -24931.464882 eV Core-core repulsion = 21125.926695 eV Total energy + Delta-G solvation = -3805.538187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03708 -41.16517 -40.06404 -38.67299 -38.03505 -35.79412 -34.33047 -33.43195 -32.35989 -30.59392 -30.28965 -28.11634 -27.36713 -25.22380 -24.68011 -23.79256 -22.90696 -21.52569 -19.92996 -19.69480 -19.33011 -18.30511 -18.12323 -17.56391 -16.96830 -16.42959 -16.20038 -16.13265 -15.89760 -15.54752 -15.36209 -15.28715 -15.10096 -14.63899 -14.39706 -14.30141 -14.24446 -13.68474 -13.55242 -13.02593 -12.75320 -12.66518 -12.54885 -12.40256 -12.32509 -12.13061 -11.56543 -11.43809 -11.01932 -10.83763 -10.78822 -10.37384 -9.87305 -9.10179 -8.92291 -8.45548 -6.15986 -0.09506 0.11341 0.26340 0.73234 1.32628 1.43658 1.50989 1.93486 1.99340 2.15053 2.21602 2.71106 2.87811 3.21448 3.30487 3.44435 3.73372 3.86828 4.00242 4.09180 4.13978 4.30238 4.47383 4.49190 4.51608 4.57977 4.62322 4.69243 4.82047 4.95887 5.01245 5.08139 5.13450 5.19666 5.47295 5.58674 5.60709 5.70612 5.94772 6.16472 6.21474 6.50887 6.71608 6.94239 7.31441 7.78104 8.74417 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003715 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.457886 B = 7534.433176 C = 9449.519249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.291 3.709 4 C -0.177 4.177 5 C -0.063 4.063 6 C 0.062 3.938 7 N -0.651 5.651 8 C 0.549 3.451 9 O -0.544 6.544 10 C -0.244 4.244 11 C -0.027 4.027 12 C -0.200 4.200 13 C -0.038 4.038 14 C -0.258 4.258 15 C 0.152 3.848 16 O -0.187 6.187 17 C -0.426 4.426 18 H 0.107 0.893 19 C -0.020 4.020 20 N -0.903 5.903 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.248 1.248 25 C 0.126 3.874 26 N -0.523 5.523 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.122 0.878 30 H 0.149 0.851 31 H 0.126 0.874 32 H 0.427 0.573 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.270 0.730 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 5.183 9.007 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.228 6.228 3 C 0.112 3.888 4 C -0.198 4.198 5 C -0.090 4.090 6 C -0.035 4.035 7 N -0.301 5.301 8 C 0.341 3.659 9 O -0.421 6.421 10 C -0.249 4.249 11 C -0.045 4.045 12 C -0.218 4.218 13 C -0.056 4.056 14 C -0.278 4.278 15 C 0.096 3.904 16 O -0.089 6.089 17 C -0.502 4.502 18 H 0.124 0.876 19 C -0.219 4.219 20 N -0.538 5.538 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.171 1.171 25 C -0.033 4.033 26 N -0.247 5.247 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.268 0.732 33 H 0.184 0.816 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.116 3.740 8.498 17.740 hybrid contribution 1.725 0.093 -0.469 1.790 sum -13.391 3.832 8.029 16.077 Atomic orbital electron populations 1.23089 0.75659 1.04688 1.02429 1.86234 1.24556 1.23907 1.88093 1.19827 0.89239 0.85253 0.94461 1.21075 0.92432 0.99095 1.07182 1.21584 1.01089 0.91518 0.94827 1.18760 0.93625 0.85763 1.05353 1.43015 1.24626 1.09999 1.52426 1.18681 0.80342 0.89236 0.77632 1.90942 1.59615 1.45177 1.46379 1.19091 0.99349 0.93813 1.12634 1.21358 0.98165 0.90997 0.93984 1.21196 0.97945 0.97387 1.05279 1.21464 0.93878 0.98305 0.91927 1.21305 1.04493 0.92369 1.09599 1.20060 0.91711 0.88852 0.89759 1.84161 1.31136 1.32522 1.61114 1.22013 0.93578 0.96395 1.38228 0.87564 1.26702 1.03846 0.93961 0.97441 1.70302 1.39437 1.00781 1.43297 0.84593 0.74582 0.79188 0.77835 1.18725 1.19871 1.17125 1.22681 0.89891 0.95156 0.95525 1.67330 1.39855 0.98395 1.19092 0.91950 0.92601 0.85995 0.83314 0.85616 0.73179 0.81650 0.81687 0.82925 0.85959 0.92054 0.78017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.82 16 2 O -0.32 -8.47 10.48 -90.76 -0.95 -9.42 16 3 C 0.29 8.64 7.49 84.80 0.63 9.28 16 4 C -0.18 -5.71 10.03 22.45 0.23 -5.49 16 5 C -0.06 -2.28 8.80 22.56 0.20 -2.08 16 6 C 0.06 1.92 6.32 38.20 0.24 2.16 16 7 N -0.65 -19.36 5.30 -305.98 -1.62 -20.98 16 8 C 0.55 23.43 7.62 86.69 0.66 24.09 16 9 O -0.54 -30.27 12.64 16.86 0.21 -30.06 16 10 C -0.24 -9.89 5.89 -19.99 -0.12 -10.01 16 11 C -0.03 -0.72 9.53 22.52 0.21 -0.51 16 12 C -0.20 -4.81 10.02 22.25 0.22 -4.59 16 13 C -0.04 -1.09 10.03 22.30 0.22 -0.87 16 14 C -0.26 -10.55 9.16 22.36 0.20 -10.35 16 15 C 0.15 7.47 6.66 22.91 0.15 7.63 16 16 O -0.19 -11.52 7.84 0.83 0.01 -11.52 16 17 C -0.43 -25.19 9.49 67.93 0.64 -24.55 16 18 H 0.11 5.63 5.20 -2.91 -0.02 5.61 16 19 C -0.02 -1.16 5.49 84.85 0.47 -0.69 16 20 N -0.90 -58.03 13.67 21.62 0.30 -57.73 16 21 Si 1.02 43.58 29.55 68.60 2.03 45.61 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 25 C 0.13 3.09 11.11 84.78 0.94 4.03 16 26 N -0.52 -14.19 9.20 -308.42 -2.84 -17.03 16 27 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 28 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 29 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.13 5.50 6.32 -2.91 -0.02 5.48 16 32 H 0.43 8.20 6.87 -92.71 -0.64 7.56 16 33 H 0.17 2.65 6.41 -2.91 -0.02 2.63 16 34 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 37 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 38 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -86.41 333.36 3.72 -82.69 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.49 Total: 28.56 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 6.09 Total: -10.13 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.16 Total: -95.74 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.73 Total: -51.00 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -86.41 3.72 -82.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919805288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.976 kcal (2) G-P(sol) polarization free energy of solvation -86.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds