Wall clock time and date at job start Fri Apr 10 2020 22:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48500 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46920 * 299.99852 * 3 2 1 6 6 H 1.48496 * 109.46969 * 59.99963 * 3 2 1 7 7 C 1.38821 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99833 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00384 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.26984 * 32.92313 * 10 9 7 12 12 C 1.51370 * 110.29800 * 270.74610 * 10 9 7 13 13 C 1.38497 * 130.39618 * 43.92978 * 12 10 9 14 14 C 1.38105 * 120.21699 * 179.97438 * 13 12 10 15 15 C 1.38253 * 119.93700 * 359.97438 * 14 13 12 16 16 C 1.38105 * 119.93017 * 0.02562 * 15 14 13 17 17 C 1.38220 * 109.75836 * 223.88470 * 12 10 9 18 18 C 1.51369 * 109.75741 * 0.02562 * 17 12 10 19 19 C 1.54345 * 110.30425 * 154.99809 * 10 9 7 20 20 H 1.09002 * 110.82153 * 26.84771 * 19 10 9 21 21 N 1.46499 * 110.82209 * 263.49237 * 19 10 9 22 22 C 1.34777 * 119.99665 * 155.27969 * 21 19 10 23 23 O 1.21503 * 120.00321 * 359.72059 * 22 21 19 24 24 C 1.48277 * 119.99570 * 179.72350 * 22 21 19 25 25 C 1.47490 * 128.71159 * 179.97438 * 24 22 21 26 26 N 1.30642 * 102.71992 * 179.97438 * 25 24 22 27 27 O 1.20841 * 109.61804 * 0.02562 * 26 25 24 28 28 N 1.20907 * 115.90405 * 359.73616 * 27 26 25 29 29 H 0.96996 * 120.00180 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99669 * 359.97438 * 9 7 2 31 31 H 1.07999 * 119.89004 * 359.93495 * 13 12 10 32 32 H 1.08001 * 120.03134 * 179.97438 * 14 13 12 33 33 H 1.07995 * 120.03567 * 180.02562 * 15 14 13 34 34 H 1.08002 * 119.89173 * 179.97438 * 16 15 14 35 35 H 1.08996 * 110.30607 * 258.26226 * 18 17 12 36 36 H 1.09009 * 110.30440 * 136.10990 * 18 17 12 37 37 H 0.97001 * 119.99790 * 334.99682 * 21 19 10 38 38 H 1.08005 * 128.64035 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9898 -3.5550 0.5549 12 6 2.3377 -4.1017 -1.4212 13 6 2.7842 -3.3808 -2.5162 14 6 2.9709 -4.0083 -3.7322 15 6 2.7121 -5.3606 -3.8578 16 6 2.2668 -6.0811 -2.7670 17 6 2.0789 -5.4536 -1.5467 18 6 1.6070 -6.0096 -0.2202 19 6 1.1892 -4.7769 0.6090 20 1 0.1291 -4.5597 0.4782 21 7 1.5082 -4.9694 2.0258 22 6 0.5892 -5.4989 2.8575 23 8 -0.5056 -5.8118 2.4332 24 6 0.9141 -5.6995 4.2902 25 6 0.0644 -6.2560 5.3596 26 7 0.8452 -6.2006 6.4056 27 8 1.9134 -5.7318 6.0901 28 7 2.0346 -5.4300 4.9256 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.9864 -2.3244 -2.4190 32 1 3.3188 -3.4431 -4.5843 33 1 2.8579 -5.8529 -4.8078 34 1 2.0644 -7.1374 -2.8659 35 1 2.4180 -6.5418 0.2768 36 1 0.7544 -6.6722 -0.3696 37 1 2.3822 -4.7197 2.3645 38 1 -0.9507 -6.6189 5.2943 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960322171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:23 Heat of formation + Delta-G solvation = 108.133494 kcal Electronic energy + Delta-G solvation = -25256.743171 eV Core-core repulsion = 21490.169174 eV Total energy + Delta-G solvation = -3766.573997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.99300 -41.58496 -40.38058 -37.59649 -36.00129 -35.71256 -35.56175 -34.12559 -32.89915 -31.25325 -29.43947 -27.69332 -27.03984 -25.21791 -24.95069 -23.46321 -22.15936 -21.81308 -21.46935 -20.11452 -19.72260 -19.23554 -18.72682 -17.55222 -17.21051 -16.65291 -16.30544 -16.21150 -15.90638 -15.61912 -15.40446 -15.15301 -14.79701 -14.24685 -14.04040 -13.83644 -13.77882 -13.49733 -13.33335 -13.00802 -12.89901 -12.75486 -12.43348 -12.28980 -12.16363 -12.05714 -11.87048 -11.83163 -11.67624 -11.60489 -11.05564 -10.37057 -9.60450 -9.39262 -9.08940 -7.96824 -5.26421 -0.38515 0.29756 0.53045 0.60795 1.43861 1.45123 1.46234 1.55101 1.76239 2.31085 2.44939 2.52641 2.85245 2.94482 3.34585 3.40891 3.64286 3.69912 3.72734 4.02345 4.09796 4.10934 4.29821 4.34087 4.35919 4.43421 4.65151 4.75931 4.81409 4.86482 4.94936 5.20152 5.24502 5.33646 5.48140 5.64724 5.73096 5.88755 6.13977 6.21255 6.25278 6.77006 7.29906 7.32446 7.99010 8.24150 9.26354 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.009383 B = 0.004791 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.362634 B = 5842.676550 C = 8172.909008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.204 3.796 11 H 0.071 0.929 12 C -0.119 4.119 13 C -0.107 4.107 14 C -0.132 4.132 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.107 4.107 18 C -0.074 4.074 19 C 0.148 3.852 20 H 0.084 0.916 21 N -0.685 5.685 22 C 0.609 3.391 23 O -0.539 6.539 24 C -0.054 4.054 25 C 0.056 3.944 26 N -0.361 5.361 27 O 0.346 5.654 28 N -0.322 5.322 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.415 0.585 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -16.946 2.904 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.360 5.360 10 C 0.095 3.905 11 H 0.089 0.911 12 C -0.122 4.122 13 C -0.125 4.125 14 C -0.150 4.150 15 C -0.139 4.139 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.113 4.113 19 C 0.042 3.958 20 H 0.102 0.898 21 N -0.335 5.335 22 C 0.392 3.608 23 O -0.415 6.415 24 C -0.219 4.219 25 C -0.130 4.130 26 N -0.086 5.086 27 O 0.119 5.881 28 N -0.040 5.040 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.252 0.748 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.603 -16.835 3.344 18.055 hybrid contribution -0.533 1.620 -0.485 1.773 sum 5.070 -15.215 2.859 16.290 Atomic orbital electron populations 1.69822 1.06647 1.25890 1.59435 1.25473 0.96158 1.00810 1.03738 0.85188 0.78471 0.80346 0.76475 1.18833 1.22306 1.22397 1.19542 0.91254 0.84694 1.40779 0.90471 1.42530 1.05152 1.00355 1.88001 1.20110 0.94464 0.85033 0.90921 0.91106 1.21436 0.98703 0.94757 0.97290 1.20750 0.99290 0.99419 0.93063 1.21303 1.00994 0.95879 0.96802 1.21326 0.99392 0.93737 0.99480 1.20874 1.00059 1.00891 0.91117 1.20594 1.00593 0.94014 0.95653 1.21273 1.02156 0.96456 0.91381 1.21817 1.00029 0.95113 0.78822 0.89769 1.45654 1.17316 1.61722 1.08842 1.16585 0.84193 0.77835 0.82153 1.90832 1.22680 1.51793 1.76199 1.26080 0.91240 1.06097 0.98441 1.28221 1.03649 0.97490 0.83623 1.75093 0.94469 1.14350 1.24706 1.85092 1.28870 1.54427 1.19736 1.75391 1.22012 1.13295 0.93278 0.94121 0.79525 0.88313 0.84647 0.83018 0.83691 0.87970 0.89270 0.74776 0.72672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.23 -12.25 9.69 84.04 0.81 -11.44 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.72 -34.98 5.14 -323.31 -1.66 -36.64 16 10 C 0.20 7.70 3.23 44.92 0.15 7.84 16 11 H 0.07 2.61 7.75 -2.39 -0.02 2.59 16 12 C -0.12 -4.24 5.79 -19.59 -0.11 -4.35 16 13 C -0.11 -3.89 10.00 22.30 0.22 -3.66 16 14 C -0.13 -3.81 10.05 22.24 0.22 -3.59 16 15 C -0.12 -2.92 10.05 22.24 0.22 -2.70 16 16 C -0.11 -2.74 10.04 22.30 0.22 -2.52 16 17 C -0.11 -3.15 6.14 -19.59 -0.12 -3.27 16 18 C -0.07 -1.93 6.49 30.51 0.20 -1.73 16 19 C 0.15 4.74 3.12 45.90 0.14 4.88 16 20 H 0.08 3.19 7.22 -2.39 -0.02 3.17 16 21 N -0.68 -19.33 5.14 -440.68 -2.26 -21.60 16 22 C 0.61 17.39 7.85 86.91 0.68 18.07 16 23 O -0.54 -18.07 16.69 -3.73 -0.06 -18.13 16 24 C -0.05 -1.27 7.56 44.29 0.34 -0.93 16 25 C 0.06 1.02 12.63 87.31 1.10 2.12 16 26 N -0.36 -7.13 12.22 -61.43 -0.75 -7.88 16 27 O 0.35 7.23 11.65 140.84 1.64 8.87 16 28 N -0.32 -7.40 12.13 -52.05 -0.63 -8.03 16 29 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.37 20.08 7.61 -92.71 -0.71 19.37 16 31 H 0.10 4.07 7.79 -2.91 -0.02 4.04 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.10 2.22 8.08 -2.39 -0.02 2.20 16 36 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.42 10.57 8.28 -92.71 -0.77 9.80 16 38 H 0.26 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -67.00 338.27 2.79 -64.20 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.34 Total: 34.83 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 4.55 Total: -4.69 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -5.02 Total: -132.58 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 1.58 Total: -9.26 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.00 2.79 -64.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960322171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.336 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds