Wall clock time and date at job start Fri Apr 10 2020 22:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47373 * 355.35745 * 3 2 1 5 5 H 1.48501 * 109.47224 * 115.36378 * 3 2 1 6 6 H 1.48505 * 109.47188 * 235.35974 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46494 * 114.57476 * 272.66929 * 11 10 9 13 13 C 1.34783 * 119.99677 * 248.66915 * 12 11 10 14 14 O 1.21557 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.47817 * 119.99990 * 179.97438 * 13 12 11 16 16 C 1.39651 * 120.02438 * 359.73135 * 15 13 12 17 17 C 1.37739 * 119.97218 * 179.69326 * 16 15 13 18 18 C 1.39431 * 120.02312 * 0.57820 * 17 16 15 19 19 C 1.48408 * 119.97499 * 179.69658 * 18 17 16 20 20 N 1.35226 * 126.41121 * 0.02562 * 19 18 17 21 21 C 1.30971 * 105.58302 * 179.97438 * 20 19 18 22 22 O 1.33679 * 107.11782 * 359.97438 * 21 20 19 23 23 N 1.21293 * 110.03013 * 359.73732 * 22 21 20 24 24 C 1.39432 * 120.05432 * 359.71762 * 18 17 16 25 25 C 1.37732 * 120.02632 * 359.97438 * 24 18 17 26 26 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 27 27 H 0.97005 * 119.99783 * 184.87920 * 1 2 3 28 28 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 29 29 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 30 30 H 1.08994 * 114.08496 * 139.78289 * 11 10 9 31 31 H 0.97001 * 120.00473 * 68.67052 * 12 11 10 32 32 H 1.08005 * 120.01781 * 359.97352 * 16 15 13 33 33 H 1.08000 * 119.98334 * 180.29603 * 17 16 15 34 34 H 1.07993 * 126.43924 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.98733 * 179.97438 * 24 18 17 36 36 H 1.08006 * 120.01483 * 179.97438 * 25 24 18 37 37 H 1.09003 * 113.46756 * 321.86183 * 26 9 7 38 38 H 1.09002 * 113.47202 * 92.24195 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1133 5 1 3.0170 1.7466 1.2651 6 1 3.1868 1.6485 -1.1519 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4709 -1.3273 1.7645 13 6 6.5871 -0.9364 2.4109 14 8 7.5397 -0.5198 1.7811 15 6 6.6525 -1.0134 3.8856 16 6 5.5560 -1.4857 4.6100 17 6 5.6204 -1.5629 5.9837 18 6 6.7754 -1.1583 6.6518 19 6 6.8412 -1.2356 8.1324 20 7 5.8640 -1.6751 8.9574 21 6 6.3518 -1.5692 10.1683 22 8 7.5897 -1.0781 10.0522 23 7 7.8572 -0.8977 8.8830 24 6 7.8686 -0.6807 5.9300 25 6 7.8089 -0.6086 4.5559 26 6 4.4119 -2.2308 -0.3351 27 1 -0.4850 -0.8371 0.0715 28 1 4.6555 0.1232 -1.2580 29 1 4.2793 0.6479 0.4390 30 1 6.3869 -1.2364 -0.1717 31 1 4.7106 -1.6595 2.2671 32 1 4.6594 -1.7946 4.0931 33 1 4.7742 -1.9326 6.5438 34 1 5.8489 -1.8304 11.0875 35 1 8.7626 -0.3673 6.4486 36 1 8.6556 -0.2382 3.9970 37 1 4.2436 -3.1278 0.2608 38 1 4.6305 -2.4537 -1.3795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031274442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:34 Heat of formation + Delta-G solvation = 135.501414 kcal Electronic energy + Delta-G solvation = -24543.421109 eV Core-core repulsion = 20778.033873 eV Total energy + Delta-G solvation = -3765.387235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.99027 -40.37376 -39.06933 -37.81455 -36.15593 -33.76866 -33.18147 -32.24150 -31.30191 -30.89080 -27.92391 -25.66355 -25.42777 -24.68937 -23.26289 -22.42263 -22.16647 -20.58957 -19.60057 -18.80349 -18.49013 -17.87991 -17.53032 -16.59417 -16.05915 -15.80993 -15.35538 -15.02052 -14.72748 -14.54294 -13.94412 -13.82978 -13.78517 -13.33363 -13.31566 -13.10044 -12.95186 -12.35844 -12.22143 -12.02131 -11.68779 -11.41265 -11.28516 -11.06293 -10.88596 -10.59372 -10.35445 -9.91450 -9.55011 -9.31271 -9.25098 -9.03063 -8.91440 -8.57029 -7.21962 -6.37256 -3.29088 0.10660 0.90457 1.08963 1.91824 2.56291 2.88972 3.11910 3.23570 3.40973 3.42462 3.61542 3.62742 3.69587 4.49220 4.55239 4.60378 4.65683 4.67831 4.72608 5.01818 5.07733 5.11575 5.23051 5.35004 5.38185 5.49678 5.72973 5.79491 5.87577 5.99086 6.04067 6.09501 6.16034 6.19978 6.27237 6.36316 6.48490 6.90270 7.03191 7.69841 7.70403 8.18003 8.30733 8.91826 9.44505 10.29858 11.15300 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.002995 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.815196 B = 9345.720897 C =10169.072404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.309 4.309 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.085 3.915 11 C 0.097 3.903 12 N -0.688 5.688 13 C 0.556 3.444 14 O -0.541 6.541 15 C -0.107 4.107 16 C -0.086 4.086 17 C -0.080 4.080 18 C -0.009 4.009 19 C 0.213 3.787 20 N -0.477 5.477 21 C 0.165 3.835 22 O 0.081 5.919 23 N -0.372 5.372 24 C -0.092 4.092 25 C -0.063 4.063 26 C 0.114 3.886 27 H 0.261 0.739 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.407 0.593 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.050 0.950 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.467 -4.700 19.152 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.221 4.221 3 Si 0.903 3.097 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.435 4.435 8 H 0.101 0.899 9 N -0.358 5.358 10 C -0.042 4.042 11 C -0.009 4.009 12 N -0.337 5.337 13 C 0.343 3.657 14 O -0.419 6.419 15 C -0.111 4.111 16 C -0.105 4.105 17 C -0.099 4.099 18 C -0.011 4.011 19 C -0.057 4.057 20 N -0.209 5.209 21 C -0.077 4.077 22 O 0.020 5.980 23 N -0.078 5.078 24 C -0.112 4.112 25 C -0.082 4.082 26 C -0.013 4.013 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.243 0.757 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.281 0.719 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.068 0.932 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.093 -2.566 18.039 24.310 hybrid contribution -0.567 -1.911 0.590 2.079 sum 15.526 -4.477 18.629 24.661 Atomic orbital electron populations 1.70929 1.05366 1.29483 1.51640 1.25706 0.96392 1.00964 0.99038 0.83692 0.73720 0.76010 0.76313 1.22268 1.22243 1.21340 1.20105 0.78758 0.95751 1.48864 0.89908 1.46135 1.02410 1.01654 1.85569 1.23278 0.87798 0.94337 0.98779 1.22519 0.99010 0.99525 0.79860 1.45439 1.16496 1.64372 1.07441 1.18184 0.82879 0.77814 0.86868 1.90752 1.36624 1.46421 1.68138 1.20225 0.95503 1.01864 0.93490 1.21397 0.98005 0.97257 0.93828 1.21119 0.97034 0.97804 0.93991 1.17505 0.96015 1.02553 0.85043 1.24006 0.85711 0.98960 0.96978 1.72005 1.28699 1.20019 1.00180 1.30500 0.83328 0.94216 0.99610 1.85311 1.31766 1.59139 1.21766 1.74926 1.22726 1.20650 0.89461 1.21101 0.97806 0.98496 0.93781 1.21186 0.97527 0.96177 0.93262 1.22709 0.87083 0.93546 0.97954 0.92877 0.92573 0.92755 0.87621 0.75678 0.84263 0.83986 0.71851 0.84570 0.83686 0.93215 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.70 55.49 0.76 -28.28 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 1.07 26.93 25.13 -169.99 -4.27 22.65 16 4 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.29 -7.10 6.65 56.52 0.38 -6.72 16 6 H -0.29 -6.77 6.13 56.52 0.35 -6.43 16 7 C -0.31 -8.59 11.08 -15.06 -0.17 -8.76 16 8 H 0.08 2.42 8.05 -52.49 -0.42 1.99 16 9 N -0.63 -14.77 3.70 -184.60 -0.68 -15.45 16 10 C 0.08 1.78 5.54 -8.36 -0.05 1.73 16 11 C 0.10 1.70 4.61 -67.67 -0.31 1.39 16 12 N -0.69 -11.15 5.35 -54.44 -0.29 -11.44 16 13 C 0.56 8.89 7.77 -12.34 -0.10 8.79 16 14 O -0.54 -9.98 15.93 5.32 0.08 -9.90 16 15 C -0.11 -1.43 5.88 -104.92 -0.62 -2.05 16 16 C -0.09 -1.02 9.53 -39.24 -0.37 -1.40 16 17 C -0.08 -0.89 9.68 -39.32 -0.38 -1.27 16 18 C -0.01 -0.11 5.88 -104.82 -0.62 -0.72 16 19 C 0.21 2.36 7.80 -156.12 -1.22 1.14 16 20 N -0.48 -4.54 11.24 -13.73 -0.15 -4.70 16 21 C 0.16 0.87 13.39 52.06 0.70 1.57 16 22 O 0.08 0.62 11.29 18.01 0.20 0.82 16 23 N -0.37 -3.94 11.84 30.95 0.37 -3.57 16 24 C -0.09 -1.02 9.67 -39.32 -0.38 -1.40 16 25 C -0.06 -0.76 9.58 -39.24 -0.38 -1.13 16 26 C 0.11 2.11 8.44 -8.51 -0.07 2.03 16 27 H 0.26 8.00 8.73 -40.82 -0.36 7.65 16 28 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16 29 H 0.05 1.22 4.65 -51.93 -0.24 0.98 16 30 H 0.11 1.73 7.45 -51.93 -0.39 1.34 16 31 H 0.41 6.23 6.78 -40.82 -0.28 5.95 16 32 H 0.14 1.51 6.39 -52.48 -0.34 1.18 16 33 H 0.14 1.44 7.86 -52.49 -0.41 1.03 16 34 H 0.27 -0.24 8.06 -52.49 -0.42 -0.66 16 35 H 0.14 1.32 7.86 -52.49 -0.41 0.91 16 36 H 0.15 1.67 7.64 -52.48 -0.40 1.26 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -35.86 329.90 -6.86 -42.72 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.79 Total: 2.98 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -4.05 Total: -0.80 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.00 Total: -63.45 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.29 Total: -9.07 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.27 Total: 22.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.86 -6.86 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031274442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.218 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds