Wall clock time and date at job start Fri Apr 10 2020 22:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48511 * 109.47024 * 274.98634 * 3 2 1 5 5 H 1.48498 * 109.47469 * 34.98807 * 3 2 1 6 6 H 1.48506 * 109.47217 * 154.99024 * 3 2 1 7 7 C 1.38818 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99949 * 186.81780 * 7 2 1 9 9 N 1.36938 * 119.99931 * 6.81266 * 7 2 1 10 10 C 1.46641 * 126.56213 * 354.40343 * 9 7 2 11 11 C 1.50783 * 107.69721 * 179.97438 * 10 9 7 12 12 C 1.38449 * 131.19995 * 179.97438 * 11 10 9 13 13 C 1.38144 * 120.09940 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.96659 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.02221 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47416 * 89.99825 * 15 14 13 17 17 C 1.34771 * 120.00260 * 179.73012 * 16 15 14 18 18 O 1.21502 * 120.00118 * 0.27069 * 17 16 15 19 19 C 1.48274 * 120.00099 * 180.27948 * 17 16 15 20 20 C 1.47494 * 128.71068 * 179.97438 * 19 17 16 21 21 N 1.30648 * 102.71500 * 179.97438 * 20 19 17 22 22 O 1.20840 * 109.61713 * 0.02562 * 21 20 19 23 23 N 1.20902 * 115.90954 * 359.68754 * 22 21 20 24 24 C 1.38152 * 119.95941 * 0.27211 * 14 13 12 25 25 C 1.38062 * 108.86364 * 359.97438 * 11 10 9 26 26 C 1.46632 * 126.56243 * 174.39852 * 9 7 2 27 27 H 0.96999 * 120.00216 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.81084 * 60.44968 * 10 9 7 29 29 H 1.08996 * 109.80707 * 299.53992 * 10 9 7 30 30 H 1.08004 * 119.94784 * 0.02695 * 12 11 10 31 31 H 1.08004 * 120.01294 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.46887 * 329.99882 * 15 14 13 33 33 H 1.09000 * 109.47446 * 210.00096 * 15 14 13 34 34 H 0.96997 * 119.99587 * 359.97438 * 16 15 14 35 35 H 1.08000 * 128.64499 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.94840 * 179.72326 * 24 14 13 37 37 H 1.08999 * 109.81386 * 60.45600 * 26 9 7 38 38 H 1.08994 * 109.81557 * 299.54865 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3949 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2055 0.1105 9 7 1.3328 -2.3839 -0.1417 10 6 -0.1228 -2.5563 -0.1870 11 6 -0.4050 -4.0281 -0.3533 12 6 -1.5989 -4.7224 -0.4506 13 6 -1.5914 -6.0957 -0.6004 14 6 -0.3902 -6.7780 -0.6539 15 6 -0.3806 -8.2759 -0.8179 16 7 -0.3532 -8.6110 -2.2439 17 6 -0.3350 -9.9012 -2.6328 18 8 -0.3461 -10.7867 -1.8009 19 6 -0.3010 -10.2402 -4.0758 20 6 -0.2766 -11.5715 -4.7103 21 7 -0.2519 -11.2825 -5.9842 22 8 -0.2582 -10.0828 -6.1282 23 7 -0.2907 -9.4288 -5.1119 24 6 0.8013 -6.0862 -0.5519 25 6 0.7946 -4.7094 -0.4068 26 6 1.9240 -3.7189 -0.2767 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5341 -2.0038 -1.0318 29 1 -0.5663 -2.1973 0.7417 30 1 -2.5374 -4.1896 -0.4092 31 1 -2.5236 -6.6360 -0.6757 32 1 -1.2772 -8.6970 -0.3629 33 1 0.5025 -8.6892 -0.3306 34 1 -0.3447 -7.9041 -2.9080 35 1 -0.2786 -12.5433 -4.2391 36 1 1.7395 -6.6199 -0.5892 37 1 2.5195 -3.9503 0.6064 38 1 2.5517 -3.7568 -1.1669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054286820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:42 Heat of formation + Delta-G solvation = 123.135708 kcal Electronic energy + Delta-G solvation = -24235.083777 eV Core-core repulsion = 20469.160325 eV Total energy + Delta-G solvation = -3765.923452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.96733 -41.31216 -40.67010 -37.93549 -36.09020 -35.64192 -35.52823 -34.11424 -32.54319 -31.45964 -29.28546 -27.88004 -27.17309 -25.64934 -24.97601 -23.61034 -22.12529 -21.99794 -21.50008 -20.08884 -19.67980 -19.01588 -18.69384 -17.31387 -17.19575 -16.65037 -16.37794 -16.09513 -15.99285 -15.93731 -15.61203 -15.06905 -14.89254 -14.51907 -13.89299 -13.69603 -13.51415 -13.48681 -13.33581 -13.08313 -13.05088 -12.97576 -12.72654 -12.43066 -12.09651 -12.00953 -11.87051 -11.86112 -11.74600 -11.62865 -10.91763 -10.34300 -9.73769 -9.62295 -8.86362 -7.96251 -5.32095 -0.36938 0.21687 0.32149 0.43813 1.45184 1.47721 1.56784 1.57827 1.77438 2.34315 2.43496 2.45619 2.74636 2.98206 3.26107 3.42333 3.52526 3.69266 3.74552 3.80619 3.95363 4.12074 4.31858 4.45445 4.48446 4.62142 4.69401 4.76414 4.82652 4.95634 5.07820 5.16100 5.25980 5.32183 5.42821 5.50675 5.53430 5.84874 6.02417 6.08377 6.15840 6.76365 6.98683 7.33901 7.63752 8.31910 9.17401 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.002402 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.508472 B =11656.154065 C =12153.532139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.986 3.014 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.219 3.781 11 C -0.109 4.109 12 C -0.113 4.113 13 C -0.086 4.086 14 C -0.114 4.114 15 C 0.175 3.825 16 N -0.698 5.698 17 C 0.611 3.389 18 O -0.537 6.537 19 C -0.053 4.053 20 C 0.055 3.945 21 N -0.364 5.364 22 O 0.338 5.662 23 N -0.325 5.325 24 C -0.074 4.074 25 C -0.119 4.119 26 C 0.171 3.829 27 H 0.251 0.749 28 H 0.027 0.973 29 H 0.021 0.979 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.414 0.586 35 H 0.258 0.742 36 H 0.143 0.857 37 H 0.042 0.958 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -23.420 -6.978 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.813 3.187 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.351 5.351 10 C 0.094 3.906 11 C -0.110 4.110 12 C -0.131 4.131 13 C -0.104 4.104 14 C -0.114 4.114 15 C 0.053 3.947 16 N -0.349 5.349 17 C 0.393 3.607 18 O -0.413 6.413 19 C -0.218 4.218 20 C -0.131 4.131 21 N -0.089 5.089 22 O 0.113 5.887 23 N -0.044 5.044 24 C -0.093 4.093 25 C -0.119 4.119 26 C 0.046 3.954 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.149 0.851 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.251 0.749 35 H 0.274 0.726 36 H 0.161 0.839 37 H 0.059 0.941 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.921 -23.239 -7.367 24.553 hybrid contribution 0.294 1.502 0.625 1.654 sum -2.627 -21.737 -6.742 22.909 Atomic orbital electron populations 1.70158 1.06530 1.25873 1.57304 1.25776 0.96713 1.01359 1.01789 0.84951 0.77857 0.78421 0.77427 1.21172 1.21890 1.18896 1.19402 0.91758 0.82808 1.43457 0.89195 1.44263 1.02058 1.02329 1.86484 1.19304 0.84992 0.88131 0.98156 1.21199 0.95185 0.96494 0.98168 1.20705 0.96424 0.94808 1.01185 1.21194 0.98702 0.92610 0.97886 1.19619 0.92715 0.94860 1.04218 1.20257 1.04754 0.89659 0.80030 1.45988 1.72549 1.06570 1.09802 1.16459 0.77121 0.83337 0.83740 1.90850 1.50870 1.47838 1.51773 1.26231 1.08367 0.91264 0.95984 1.28274 0.97187 1.01121 0.86514 1.75113 1.17251 0.96003 1.20570 1.85117 1.63192 1.11804 1.28552 1.75418 1.12377 1.22340 0.94314 1.20542 0.99185 0.90815 0.98723 1.20585 0.95170 0.94660 1.01494 1.19813 0.93454 0.83393 0.98749 0.93969 0.95556 0.96076 0.85146 0.82493 0.88484 0.89145 0.74936 0.72585 0.83933 0.94062 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.25 10.49 21.65 0.23 -57.03 16 2 C -0.06 -3.59 5.48 84.86 0.47 -3.12 16 3 Si 0.99 45.39 29.56 68.60 2.03 47.41 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.25 -13.95 10.31 84.03 0.87 -13.08 16 8 H 0.09 4.81 7.84 -2.91 -0.02 4.78 16 9 N -0.62 -33.32 3.41 -709.70 -2.42 -35.74 16 10 C 0.22 11.27 5.40 85.63 0.46 11.73 16 11 C -0.11 -4.33 6.22 -19.83 -0.12 -4.45 16 12 C -0.11 -3.44 10.05 22.30 0.22 -3.22 16 13 C -0.09 -1.92 9.70 22.25 0.22 -1.70 16 14 C -0.11 -2.40 5.25 -19.88 -0.10 -2.51 16 15 C 0.17 2.80 5.80 85.63 0.50 3.30 16 16 N -0.70 -11.23 5.55 -469.30 -2.60 -13.84 16 17 C 0.61 10.79 7.85 86.91 0.68 11.47 16 18 O -0.54 -11.82 17.05 -3.72 -0.06 -11.88 16 19 C -0.05 -0.83 7.56 44.29 0.34 -0.50 16 20 C 0.06 0.64 12.63 87.31 1.10 1.74 16 21 N -0.36 -5.34 12.22 -61.42 -0.75 -6.09 16 22 O 0.34 5.44 11.65 140.85 1.64 7.08 16 23 N -0.33 -5.51 12.13 -52.07 -0.63 -6.14 16 24 C -0.07 -1.93 9.70 22.30 0.22 -1.71 16 25 C -0.12 -4.28 6.22 -19.83 -0.12 -4.40 16 26 C 0.17 7.26 7.25 85.63 0.62 7.88 16 27 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.03 1.52 7.38 -2.39 -0.02 1.50 16 29 H 0.02 1.22 7.62 -2.39 -0.02 1.20 16 30 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.10 1.37 8.09 -2.38 -0.02 1.35 16 33 H 0.09 1.39 8.08 -2.39 -0.02 1.38 16 34 H 0.41 6.49 8.32 -92.71 -0.77 5.72 16 35 H 0.26 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -70.35 336.94 3.12 -67.24 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.35 Total: 7.55 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.34 Total: 1.43 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.18 Total: -118.83 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: 1.58 Total: -4.79 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.35 3.12 -67.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054286820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.372 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds