Wall clock time and date at job start Fri Apr 10 2020 22:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.46303 * 114.00064 * 2 1 4 4 C 1.46898 * 111.00284 * 116.04775 * 3 2 1 5 5 C 1.46904 * 110.99671 * 240.00025 * 3 2 1 6 6 C 1.53005 * 109.46802 * 174.99830 * 5 3 2 7 7 N 1.46503 * 109.46690 * 180.02562 * 6 5 3 8 8 S 1.65600 * 119.99765 * 164.72873 * 7 6 5 9 9 O 1.42094 * 106.40512 * 178.53760 * 8 7 6 10 10 O 1.42106 * 106.40226 * 311.45618 * 8 7 6 11 11 C 1.76198 * 107.22067 * 64.99582 * 8 7 6 12 12 C 1.38640 * 119.75037 * 269.72949 * 11 8 7 13 13 C 1.37618 * 120.24754 * 179.72238 * 12 11 8 14 14 C 1.40708 * 119.74303 * 0.56852 * 13 12 11 15 15 C 1.41395 * 120.24350 * 179.68190 * 14 13 12 16 16 H 1.07999 * 120.00421 * 204.40366 * 15 14 13 17 17 C 1.39948 * 120.00045 * 24.41232 * 15 14 13 18 18 N 1.30828 * 119.99938 * 17.83864 * 17 15 14 19 19 Si 1.86804 * 120.00206 * 197.84763 * 17 15 14 20 20 H 1.48497 * 109.46953 * 59.99362 * 19 17 15 21 21 H 1.48494 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46965 * 299.99721 * 19 17 15 23 23 C 1.40718 * 119.51587 * 359.70656 * 14 13 12 24 24 C 1.37623 * 119.74191 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47109 * 300.00187 * 1 2 3 27 27 H 1.09000 * 109.47205 * 60.00099 * 1 2 3 28 28 H 1.08995 * 109.47349 * 183.95286 * 4 3 2 29 29 H 1.08995 * 109.46659 * 303.95625 * 4 3 2 30 30 H 1.08999 * 109.47135 * 63.95344 * 4 3 2 31 31 H 1.08997 * 109.47202 * 55.00231 * 5 3 2 32 32 H 1.08999 * 109.47032 * 294.99835 * 5 3 2 33 33 H 1.08997 * 109.46914 * 60.00225 * 6 5 3 34 34 H 1.08999 * 109.47332 * 299.99822 * 6 5 3 35 35 H 0.96997 * 120.00372 * 344.99577 * 7 6 5 36 36 H 1.08001 * 119.87510 * 359.97438 * 12 11 8 37 37 H 1.07997 * 120.12712 * 180.27635 * 13 12 11 38 38 H 0.96994 * 120.00050 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.13001 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.87507 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7883 1.5726 1.2321 5 6 2.8646 1.5385 -1.1878 6 6 3.3674 2.9833 -1.2170 7 7 4.2052 3.1848 -2.4018 8 16 4.5762 4.7192 -2.9022 9 8 5.4181 4.5782 -4.0382 10 8 3.3520 5.4403 -2.9268 11 6 5.5620 5.4551 -1.6407 12 6 4.9523 6.1624 -0.6160 13 6 5.7119 6.7366 0.3776 14 6 7.1132 6.6137 0.3441 15 6 7.9043 7.2050 1.3559 16 1 8.9340 7.4618 1.1554 17 6 7.3531 7.4575 2.6172 18 7 6.2528 6.8519 2.9834 19 14 8.1883 8.6594 3.7781 20 1 8.2539 9.9989 3.1405 21 1 7.4111 8.7498 5.0401 22 1 9.5637 8.1851 4.0760 23 6 7.7216 5.8984 -0.7039 24 6 6.9417 5.3269 -1.6833 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1611 2.5968 1.2379 29 1 2.1423 1.4162 2.0959 30 1 3.6287 0.8798 1.2767 31 1 2.2792 1.3393 -2.0853 32 1 3.7155 0.8583 -1.1506 33 1 3.9529 3.1824 -0.3194 34 1 2.5165 3.6635 -1.2542 35 1 4.5393 2.4196 -2.8955 36 1 3.8768 6.2598 -0.5952 37 1 5.2346 7.2833 1.1773 38 1 5.8705 7.0271 3.8574 39 1 8.7963 5.7982 -0.7395 40 1 7.4064 4.7778 -2.4888 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118439675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:45 Heat of formation + Delta-G solvation = -79.233076 kcal Electronic energy + Delta-G solvation = -23997.309764 eV Core-core repulsion = 20325.762143 eV Total energy + Delta-G solvation = -3671.547621 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.36850 -38.80529 -38.12735 -36.80940 -36.72889 -35.78872 -34.26702 -32.05104 -31.27286 -29.35925 -27.61157 -27.54007 -25.59108 -23.30756 -22.94073 -22.40574 -20.42038 -19.40669 -18.71693 -18.20004 -18.10792 -17.20705 -16.86027 -16.70935 -16.38324 -15.84919 -15.74980 -15.54468 -15.12626 -14.92705 -14.55279 -14.20033 -14.07681 -13.94126 -13.58728 -13.40953 -13.33709 -13.10667 -13.00426 -12.90689 -12.87671 -12.82258 -12.61000 -12.53307 -12.20243 -12.00299 -11.53229 -11.33104 -11.20750 -11.00127 -10.40292 -9.83143 -9.77706 -9.53282 -8.86269 -6.63624 -0.32973 0.49937 1.07726 1.36874 1.44605 1.49698 1.51134 2.12221 2.29015 2.54856 2.93956 3.53910 3.57095 3.67474 3.92915 4.10668 4.33096 4.33928 4.38410 4.47987 4.48866 4.62169 4.65376 4.72477 4.81687 4.88535 4.89893 4.94105 4.97093 5.03784 5.13035 5.25676 5.53942 5.59334 5.61207 5.78038 5.94546 5.97485 6.14218 6.17810 6.50473 6.69715 6.82486 8.08431 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.004021 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.201687 B = 6961.688538 C = 8711.213087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.282 6.282 3 N -0.372 5.372 4 C 0.000 4.000 5 C 0.042 3.958 6 C 0.124 3.876 7 N -1.109 6.109 8 S 2.731 3.269 9 O -0.999 6.999 10 O -1.000 7.000 11 C -0.797 4.797 12 C -0.019 4.019 13 C -0.206 4.206 14 C 0.112 3.888 15 C -0.467 4.467 16 H 0.090 0.910 17 C 0.037 3.963 18 N -0.792 5.792 19 Si 0.988 3.012 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.256 1.256 23 C -0.259 4.259 24 C -0.001 4.001 25 H 0.109 0.891 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.425 0.575 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.299 0.701 39 H 0.109 0.891 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -9.510 -0.167 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 N -0.142 5.142 4 C -0.148 4.148 5 C -0.088 4.088 6 C -0.003 4.003 7 N -0.870 5.870 8 S 2.826 3.174 9 O -0.990 6.990 10 O -0.991 6.991 11 C -0.890 4.890 12 C -0.039 4.039 13 C -0.226 4.226 14 C 0.109 3.891 15 C -0.493 4.493 16 H 0.108 0.892 17 C -0.183 4.183 18 N -0.414 5.414 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.279 4.279 24 C -0.021 4.021 25 H 0.127 0.873 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.261 0.739 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.758 -8.922 -0.681 11.843 hybrid contribution 1.400 -0.225 1.098 1.794 sum -6.359 -9.148 0.417 11.148 Atomic orbital electron populations 1.22814 0.79169 1.03088 1.00942 1.90653 1.22540 1.18512 1.97009 1.67551 1.34531 1.08551 1.03544 1.22891 0.97512 1.02401 0.92015 1.22455 0.96876 0.95229 0.94205 1.21177 0.94441 0.97261 0.87395 1.55226 1.65683 1.25275 1.40805 1.00152 0.72418 0.72170 0.72670 1.93470 1.69302 1.86474 1.49741 1.93467 1.45961 1.72257 1.87370 1.29605 1.06925 1.29117 1.23372 1.20465 0.98336 0.93355 0.91741 1.21349 0.94358 1.06635 1.00271 1.18187 0.93066 0.86635 0.91258 1.20203 0.99571 1.33525 0.96047 0.89229 1.26940 0.95071 0.95922 1.00357 1.69821 1.17866 1.32309 1.21423 0.85136 0.79281 0.78249 0.76542 1.18455 1.18688 1.17981 1.21278 0.98820 1.07682 1.00163 1.20453 0.91945 0.94227 0.95467 0.87256 0.93475 0.93460 0.88642 0.89645 0.94059 0.88367 0.92273 0.91275 0.89735 0.73871 0.86492 0.87025 0.88981 0.87245 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.51 113.37 1.30 1.92 16 2 O -0.28 -6.62 10.96 -50.17 -0.55 -7.17 16 3 N -0.37 -8.80 5.14 -537.15 -2.76 -11.56 16 4 C 0.00 0.00 9.77 127.69 1.25 1.25 16 5 C 0.04 0.93 5.66 86.30 0.49 1.42 16 6 C 0.12 3.21 6.02 86.38 0.52 3.73 16 7 N -1.11 -29.87 6.00 -187.48 -1.12 -31.00 16 8 S 2.73 98.18 5.73 -56.49 -0.32 97.86 16 9 O -1.00 -39.42 17.26 -128.00 -2.21 -41.63 16 10 O -1.00 -40.48 16.72 -128.00 -2.14 -42.62 16 11 C -0.80 -33.66 5.97 22.46 0.13 -33.53 16 12 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 13 C -0.21 -10.26 8.70 22.73 0.20 -10.06 16 14 C 0.11 5.69 5.57 -21.29 -0.12 5.57 16 15 C -0.47 -22.92 9.05 23.46 0.21 -22.71 16 16 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 17 C 0.04 1.67 5.14 85.26 0.44 2.11 16 18 N -0.79 -36.81 10.95 21.83 0.24 -36.57 16 19 Si 0.99 33.86 29.60 68.60 2.03 35.89 16 20 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 21 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 22 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 23 C -0.26 -12.18 9.80 22.73 0.22 -11.95 16 24 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 2.18 6.33 -2.39 -0.02 2.17 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.87 6.42 -2.39 -0.02 1.86 16 34 H 0.08 2.29 7.74 -2.39 -0.02 2.27 16 35 H 0.43 9.04 8.65 -96.75 -0.84 8.20 16 36 H 0.12 4.83 7.59 -2.91 -0.02 4.81 16 37 H 0.11 5.68 6.16 -2.91 -0.02 5.67 16 38 H 0.30 12.35 8.30 -92.71 -0.77 11.59 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.13 4.79 7.60 -2.91 -0.02 4.76 16 Total: -1.00 -62.92 351.60 -1.55 -64.47 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.22 Total: 35.05 kcal Atomic # 6 Polarization: -67.80 SS G_CDS: 5.07 Total: -62.73 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.65 Total: -79.13 kcal Atomic # 8 Polarization: -86.52 SS G_CDS: -4.90 Total: -91.42 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 2.03 Total: 35.89 kcal Atomic # 16 Polarization: 98.18 SS G_CDS: -0.32 Total: 97.86 kcal Total: -62.92 -1.55 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118439675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.759 kcal (2) G-P(sol) polarization free energy of solvation -62.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds