Wall clock time and date at job start Fri Apr 10 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99427 * 2 1 4 4 H 1.48498 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46851 * 299.99474 * 3 2 1 6 6 H 1.48503 * 109.47497 * 59.99750 * 3 2 1 7 7 C 1.37875 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47475 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99767 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00521 * 180.02562 * 10 9 7 13 13 C 1.39865 * 120.00328 * 180.02562 * 12 10 9 14 14 N 1.31171 * 125.59929 * 0.02562 * 13 12 10 15 15 N 1.40434 * 106.75474 * 179.97438 * 14 13 12 16 16 H 0.97006 * 126.76784 * 179.97438 * 15 14 13 17 17 C 1.34381 * 106.46727 * 0.02562 * 15 14 13 18 18 C 1.50702 * 125.89693 * 180.26342 * 17 15 14 19 19 C 1.50699 * 109.46825 * 124.71414 * 18 17 15 20 20 O 1.21260 * 119.99932 * 359.97438 * 19 18 17 21 21 C 1.47164 * 119.99878 * 179.97438 * 19 18 17 22 22 C 1.39846 * 120.17247 * 359.72529 * 21 19 18 23 23 C 1.37892 * 119.82697 * 179.81401 * 22 21 19 24 24 C 1.38401 * 120.16783 * 0.43899 * 23 22 21 25 25 C 1.38404 * 120.35511 * 359.78693 * 24 23 22 26 26 C 1.37894 * 120.16659 * 0.02562 * 25 24 23 27 27 N 1.30854 * 108.19974 * 359.97438 * 17 15 14 28 28 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46949 * 59.99907 * 9 7 2 30 30 H 1.09005 * 109.47141 * 300.00266 * 9 7 2 31 31 H 0.97004 * 119.99247 * 359.97438 * 12 10 9 32 32 H 1.08996 * 109.46930 * 244.71074 * 18 17 15 33 33 H 1.08996 * 109.47357 * 4.71671 * 18 17 15 34 34 H 1.08003 * 120.09210 * 0.02562 * 22 21 19 35 35 H 1.08001 * 119.91597 * 180.20938 * 23 22 21 36 36 H 1.08002 * 119.82411 * 179.76851 * 24 23 22 37 37 H 1.08002 * 119.92000 * 179.97438 * 25 24 23 38 38 H 1.08005 * 120.08574 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3467 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2306 -3.6445 0.0005 11 8 3.4230 -3.4228 0.0001 12 7 1.7815 -4.9153 0.0000 13 6 2.6904 -5.9783 0.0006 14 7 3.9973 -5.8655 0.0020 15 7 4.5162 -7.1704 0.0027 16 1 5.4529 -7.4228 0.0034 17 6 3.4595 -8.0006 0.0009 18 6 3.5189 -9.5065 0.0064 19 6 2.7250 -10.0362 1.1726 20 8 2.1666 -9.2668 1.9254 21 6 2.6275 -11.4872 1.3980 22 6 3.2653 -12.3779 0.5288 23 6 3.1725 -13.7360 0.7489 24 6 2.4428 -14.2184 1.8214 25 6 1.8048 -13.3436 2.6835 26 6 1.8914 -11.9827 2.4790 27 7 2.3702 -7.2756 -0.0001 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 0.8278 -5.0925 0.0000 32 1 3.0986 -9.8900 -0.9233 33 1 4.5561 -9.8289 0.0965 34 1 3.8320 -12.0031 -0.3107 35 1 3.6673 -14.4250 0.0805 36 1 2.3707 -15.2834 1.9864 37 1 1.2369 -13.7278 3.5180 38 1 1.3926 -11.3012 3.1523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143193776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:54 Heat of formation + Delta-G solvation = 24.428501 kcal Electronic energy + Delta-G solvation = -23836.175359 eV Core-core repulsion = 20065.971641 eV Total energy + Delta-G solvation = -3770.203718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31972 -40.99394 -40.52312 -39.06254 -36.09517 -35.14996 -33.87081 -33.21580 -32.28225 -31.81974 -30.99998 -29.45483 -26.24950 -25.09386 -23.75541 -23.31700 -22.27060 -21.17720 -20.64463 -19.47047 -18.58697 -18.32417 -17.57768 -17.42670 -17.18578 -16.58854 -16.55259 -16.36888 -16.17116 -15.70294 -15.31886 -15.10692 -14.86903 -14.47792 -14.25276 -14.14415 -13.69887 -13.42434 -13.32525 -12.88876 -12.82412 -12.65610 -12.55718 -12.23127 -12.09162 -11.94549 -11.47949 -11.19221 -11.06212 -10.79947 -10.75106 -10.64608 -9.89807 -9.88308 -9.84136 -8.27602 -6.35438 -0.26984 0.49080 0.50052 1.32098 1.35470 1.39898 1.40798 1.46532 1.56067 1.93250 2.17216 2.41848 2.90343 2.95579 3.07859 3.12801 3.55718 3.91530 4.03298 4.08819 4.22686 4.31348 4.39559 4.42509 4.53505 4.59349 4.67537 4.97101 4.99710 5.10796 5.13744 5.18289 5.41008 5.52851 5.54463 5.57870 5.71507 5.86460 6.01795 6.11374 6.35040 6.53581 6.75891 7.08137 7.21453 7.35494 8.84756 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.039838 B = 0.002105 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.686203 B =13298.821824 C =13743.248197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.019 3.981 10 C 0.519 3.481 11 O -0.531 6.531 12 N -0.627 5.627 13 C 0.430 3.570 14 N -0.336 5.336 15 N -0.467 5.467 16 H 0.458 0.542 17 C 0.309 3.691 18 C -0.081 4.081 19 C 0.400 3.600 20 O -0.481 6.481 21 C -0.182 4.182 22 C -0.066 4.066 23 C -0.134 4.134 24 C -0.089 4.089 25 C -0.143 4.143 26 C -0.086 4.086 27 N -0.558 5.558 28 H 0.269 0.731 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.433 0.567 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 -35.718 -0.575 36.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.021 4.021 10 C 0.308 3.692 11 O -0.403 6.403 12 N -0.282 5.282 13 C 0.060 3.940 14 N -0.173 5.173 15 N -0.190 5.190 16 H 0.308 0.692 17 C 0.029 3.971 18 C -0.120 4.120 19 C 0.277 3.723 20 O -0.357 6.357 21 C -0.183 4.183 22 C -0.084 4.084 23 C -0.152 4.152 24 C -0.107 4.107 25 C -0.161 4.161 26 C -0.105 4.105 27 N -0.292 5.292 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.272 0.728 32 H 0.190 0.810 33 H 0.195 0.805 34 H 0.189 0.811 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.502 -34.322 -0.183 35.133 hybrid contribution 0.009 0.844 0.366 0.920 sum 7.511 -33.478 0.182 34.311 Atomic orbital electron populations 1.70032 1.07069 1.28221 1.50791 1.25788 0.95904 1.02742 0.94308 0.85354 0.78480 0.78642 0.78288 1.20094 1.19542 1.19707 1.21342 0.93700 0.90883 1.51755 0.92573 1.19091 0.93770 0.89340 0.99863 1.22066 0.90869 0.82952 0.73298 1.90616 1.18708 1.83953 1.46979 1.43111 1.09478 1.02137 1.73507 1.20807 0.87617 0.87535 0.98045 1.78732 1.08905 0.98168 1.31538 1.47809 1.10882 1.02392 1.57903 0.69223 1.24304 0.82116 0.96469 0.94177 1.21070 1.07102 0.81489 1.02304 1.22558 0.77195 0.88629 0.83872 1.90660 1.39055 1.60811 1.45147 1.20358 1.04670 0.93460 0.99774 1.21876 0.95775 0.93068 0.97662 1.21605 0.99413 0.95775 0.98377 1.21846 0.94107 1.01202 0.93536 1.21381 1.01105 0.92446 1.01126 1.21511 0.96156 0.96549 0.96262 1.70118 1.30631 0.99875 1.28586 0.92216 0.92741 0.93044 0.72754 0.81017 0.80550 0.81098 0.82229 0.83191 0.84375 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.56 13.29 21.45 0.28 -54.27 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.97 46.27 29.54 68.60 2.03 48.30 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -32.55 8.92 25.60 0.23 -32.32 16 8 H 0.06 3.58 6.75 -2.91 -0.02 3.56 16 9 C 0.02 1.01 5.46 29.10 0.16 1.17 16 10 C 0.52 26.26 7.79 87.66 0.68 26.94 16 11 O -0.53 -30.50 14.15 -3.06 -0.04 -30.54 16 12 N -0.63 -26.48 5.44 -312.87 -1.70 -28.18 16 13 C 0.43 17.70 8.83 260.81 2.30 20.01 16 14 N -0.34 -13.81 10.98 -58.89 -0.65 -14.45 16 15 N -0.47 -12.22 7.44 -50.72 -0.38 -12.60 16 16 H 0.46 7.29 8.96 -213.10 -1.91 5.38 16 17 C 0.31 7.53 7.03 138.24 0.97 8.50 16 18 C -0.08 -0.82 4.94 29.10 0.14 -0.68 16 19 C 0.40 7.15 7.11 28.03 0.20 7.35 16 20 O -0.48 -14.37 15.55 -2.97 -0.05 -14.42 16 21 C -0.18 -2.42 5.87 -20.15 -0.12 -2.54 16 22 C -0.07 -0.35 9.47 22.58 0.21 -0.14 16 23 C -0.13 -0.57 10.03 22.23 0.22 -0.35 16 24 C -0.09 -0.57 10.04 22.35 0.22 -0.35 16 25 C -0.14 -1.54 10.03 22.23 0.22 -1.32 16 26 C -0.09 -1.38 9.60 22.58 0.22 -1.16 16 27 N -0.56 -19.23 10.55 -188.94 -1.99 -21.22 16 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.05 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.05 2.76 8.14 -2.38 -0.02 2.74 16 31 H 0.43 15.49 8.82 -92.71 -0.82 14.67 16 32 H 0.17 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.18 -0.13 8.10 -2.39 -0.02 -0.15 16 34 H 0.17 -0.49 7.05 -2.91 -0.02 -0.51 16 35 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 36 H 0.15 0.21 8.06 -2.91 -0.02 0.18 16 37 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.11 2.18 7.65 -2.91 -0.02 2.16 16 Total: -1.00 -92.82 343.00 2.05 -90.78 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -1.59 Total: 10.36 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 6.13 Total: 26.25 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -4.43 Total: -130.72 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.09 Total: -44.96 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -92.82 2.05 -90.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.205 kcal (2) G-P(sol) polarization free energy of solvation -92.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds