Wall clock time and date at job start Fri Apr 10 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46841 * 310.03161 * 3 2 1 5 5 N 1.46505 * 109.46889 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99839 * 274.91538 * 5 4 3 7 7 C 1.50702 * 109.47186 * 263.64638 * 6 5 4 8 8 H 1.08000 * 119.99510 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00061 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99656 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99755 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47054 * 90.00009 * 11 9 7 13 13 H 1.48502 * 109.46781 * 210.00060 * 11 9 7 14 14 H 1.48496 * 109.47313 * 329.99610 * 11 9 7 15 15 C 1.34777 * 119.99927 * 94.91553 * 5 4 3 16 16 O 1.21610 * 120.00024 * 4.33003 * 15 5 4 17 17 C 1.47402 * 119.99995 * 184.33436 * 15 5 4 18 18 N 1.31555 * 126.81615 * 354.36232 * 17 15 5 19 19 N 1.28374 * 111.97434 * 179.97438 * 18 17 15 20 20 H 0.97004 * 124.37366 * 179.97438 * 19 18 17 21 21 C 1.37073 * 111.25366 * 359.97438 * 19 18 17 22 22 C 1.39073 * 134.64245 * 179.97438 * 21 19 18 23 23 C 1.38149 * 119.62779 * 180.02562 * 22 21 19 24 24 O 1.35907 * 119.69053 * 180.02562 * 23 22 21 25 25 C 1.39403 * 120.62855 * 0.02562 * 23 22 21 26 26 C 1.36600 * 120.47181 * 359.97438 * 25 23 22 27 27 C 1.39216 * 119.72404 * 0.02562 * 26 25 23 28 28 H 1.09004 * 109.47275 * 190.03146 * 3 2 1 29 29 H 1.08997 * 109.47073 * 70.02971 * 3 2 1 30 30 H 1.08993 * 109.47578 * 60.00228 * 4 3 2 31 31 H 1.08997 * 109.47131 * 299.99774 * 4 3 2 32 32 H 1.08998 * 109.47156 * 23.64804 * 6 5 4 33 33 H 1.09010 * 109.46945 * 143.64833 * 6 5 4 34 34 H 0.96998 * 119.99358 * 180.02562 * 10 9 7 35 35 H 1.07994 * 120.18370 * 0.05804 * 22 21 19 36 36 H 0.96701 * 113.99839 * 269.98463 * 24 23 22 37 37 H 1.07999 * 119.76168 * 180.28133 * 25 23 22 38 38 H 1.08004 * 120.13315 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9270 1.1046 5 7 4.5834 -0.9259 1.1050 6 6 5.3168 -1.8231 0.2088 7 6 5.7049 -3.0728 0.9563 8 1 5.4321 -3.1873 1.9950 9 6 6.4073 -4.0703 0.3139 10 7 6.7455 -5.1611 0.9662 11 14 6.8784 -3.8724 -1.4828 12 1 8.2080 -3.2178 -1.5766 13 1 6.9375 -5.2082 -2.1290 14 1 5.8642 -3.0341 -2.1711 15 6 5.2564 -0.0994 1.9299 16 8 4.6502 0.5882 2.7290 17 6 6.7272 -0.0288 1.8633 18 7 7.5202 -0.7799 1.1299 19 7 8.7564 -0.4738 1.2914 20 1 9.4931 -0.9134 0.8386 21 6 8.9009 0.5544 2.1862 22 6 9.9859 1.2516 2.7068 23 6 9.7715 2.2652 3.6207 24 8 10.8307 2.9477 4.1298 25 6 8.4789 2.5946 4.0258 26 6 7.4026 1.9195 3.5240 27 6 7.5988 0.8951 2.6020 28 1 2.9709 1.0128 0.1790 29 1 2.9715 -0.3502 -0.9658 30 1 2.7556 -1.9391 0.9256 31 1 2.7549 -0.5762 2.0704 32 1 4.6836 -2.0881 -0.6380 33 1 6.2150 -1.3218 -0.1520 34 1 7.2399 -5.8627 0.5143 35 1 10.9902 1.0025 2.3978 36 1 11.1955 2.5619 4.9380 37 1 8.3271 3.3925 4.7376 38 1 6.4035 2.1795 3.8413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155266584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:02 Heat of formation + Delta-G solvation = 29.787055 kcal Electronic energy + Delta-G solvation = -25453.417060 eV Core-core repulsion = 21683.445706 eV Total energy + Delta-G solvation = -3769.971354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.40267 -40.59774 -39.79601 -37.91930 -37.01331 -36.58256 -34.61145 -33.63393 -32.39629 -31.00524 -29.91020 -29.56862 -26.27827 -24.71718 -24.29420 -23.39212 -23.04480 -20.18157 -19.39957 -19.09002 -18.90169 -18.38981 -17.92597 -17.37421 -16.90548 -16.69376 -16.33207 -16.09036 -15.86113 -15.51009 -15.43644 -14.99100 -14.70956 -14.51685 -14.19221 -14.02668 -13.61212 -13.58294 -13.35254 -13.02858 -12.86937 -12.69535 -12.63938 -12.43997 -11.99658 -11.80921 -11.72363 -11.59314 -11.37232 -11.09938 -10.98452 -10.61214 -9.59136 -9.47818 -9.02562 -8.16128 -6.18372 -0.15697 0.31144 0.94102 1.45579 1.47628 1.56081 1.64297 1.80322 1.81392 2.19192 2.32949 2.45162 2.71276 3.14189 3.21591 3.26076 3.46485 3.59754 3.76866 4.07417 4.12867 4.17934 4.39406 4.41992 4.57036 4.59455 4.81192 4.87825 4.96554 5.00872 5.12044 5.22778 5.41037 5.44902 5.59829 5.69238 5.75390 6.15591 6.26227 6.54700 6.57662 6.79801 6.89771 6.94054 7.25481 7.44688 9.01068 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.005223 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.105981 B = 5359.259029 C = 7561.894860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.205 3.795 7 C -0.507 4.507 8 H 0.020 0.980 9 C 0.023 3.977 10 N -0.953 5.953 11 Si 0.933 3.067 12 H -0.262 1.262 13 H -0.298 1.298 14 H -0.233 1.233 15 C 0.604 3.396 16 O -0.570 6.570 17 C -0.021 4.021 18 N -0.171 5.171 19 N -0.412 5.412 20 H 0.456 0.544 21 C 0.072 3.928 22 C -0.147 4.147 23 C 0.143 3.857 24 O -0.499 6.499 25 C -0.157 4.157 26 C -0.042 4.042 27 C -0.140 4.140 28 H 0.127 0.873 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.262 0.738 35 H 0.158 0.842 36 H 0.415 0.585 37 H 0.158 0.842 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 14.766 0.017 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.072 4.072 4 C -0.006 4.006 5 N -0.308 5.308 6 C 0.083 3.917 7 C -0.546 4.546 8 H 0.039 0.961 9 C -0.174 4.174 10 N -0.595 5.595 11 Si 0.757 3.243 12 H -0.186 1.186 13 H -0.225 1.225 14 H -0.156 1.156 15 C 0.392 3.608 16 O -0.449 6.449 17 C -0.191 4.191 18 N -0.001 5.001 19 N -0.134 5.134 20 H 0.303 0.697 21 C -0.041 4.041 22 C -0.169 4.169 23 C 0.096 3.904 24 O -0.313 6.313 25 C -0.176 4.176 26 C -0.062 4.062 27 C -0.147 4.147 28 H 0.144 0.856 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.176 0.824 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.665 14.455 -0.836 15.940 hybrid contribution 1.178 -0.911 0.282 1.516 sum 7.843 13.544 -0.554 15.661 Atomic orbital electron populations 1.81221 1.14388 1.10666 1.10528 1.29184 0.95050 0.91439 0.91489 1.19728 0.80070 1.04219 1.03134 1.21323 0.79055 1.00719 0.99472 1.47705 1.06419 1.37454 1.39268 1.20111 0.93812 0.88197 0.89604 1.21313 1.34664 1.01328 0.97255 0.96118 1.25587 0.95141 0.94252 1.02430 1.70082 1.41327 1.09005 1.39053 0.85940 0.80745 0.77593 0.80069 1.18646 1.22466 1.15575 1.16868 0.84324 0.79442 0.80215 1.90689 1.68904 1.46462 1.38819 1.22690 0.94128 0.99308 1.02952 1.73527 0.90487 1.17674 1.18459 1.43471 1.06042 1.28155 1.35688 0.69678 1.19150 0.95660 0.93329 0.95945 1.20378 0.97556 0.97253 1.01700 1.18069 0.87151 0.90604 0.94594 1.84762 1.45924 1.53182 1.47407 1.21258 0.91044 1.02317 1.03022 1.20262 1.00385 0.92319 0.93235 1.19691 0.91454 1.00739 1.02842 0.85560 0.84509 0.89255 0.89836 0.92645 0.91306 0.92891 0.82424 0.72497 0.82444 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.20 18.54 20.01 0.37 -14.83 16 2 C 0.25 6.23 15.43 89.44 1.38 7.61 16 3 C -0.03 -0.65 6.03 28.79 0.17 -0.48 16 4 C 0.12 3.48 5.42 86.38 0.47 3.95 16 5 N -0.58 -21.00 2.47 -830.05 -2.05 -23.05 16 6 C 0.20 8.11 3.85 85.63 0.33 8.44 16 7 C -0.51 -25.83 9.06 25.60 0.23 -25.60 16 8 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 9 C 0.02 1.20 5.47 84.66 0.46 1.67 16 10 N -0.95 -55.84 13.96 21.45 0.30 -55.55 16 11 Si 0.93 38.45 27.47 68.60 1.88 40.34 16 12 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 13 H -0.30 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.23 -8.34 6.54 99.48 0.65 -7.69 16 15 C 0.60 23.47 7.61 86.66 0.66 24.13 16 16 O -0.57 -22.97 15.89 -4.06 -0.06 -23.03 16 17 C -0.02 -0.80 7.00 43.88 0.31 -0.49 16 18 N -0.17 -6.36 7.99 -44.85 -0.36 -6.72 16 19 N -0.41 -12.24 6.85 -51.61 -0.35 -12.60 16 20 H 0.46 10.51 8.96 -220.04 -1.97 8.54 16 21 C 0.07 2.03 7.37 39.17 0.29 2.31 16 22 C -0.15 -3.13 10.01 22.45 0.22 -2.91 16 23 C 0.14 2.84 6.69 22.53 0.15 2.99 16 24 O -0.50 -7.41 13.48 -92.51 -1.25 -8.66 16 25 C -0.16 -3.33 9.91 22.17 0.22 -3.11 16 26 C -0.04 -1.15 9.86 22.12 0.22 -0.93 16 27 C -0.14 -4.56 6.34 -20.12 -0.13 -4.69 16 28 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 31 H 0.08 2.58 7.23 -2.39 -0.02 2.56 16 32 H 0.06 1.98 7.08 -2.39 -0.02 1.96 16 33 H 0.07 2.69 4.75 -2.38 -0.01 2.68 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.41 2.05 9.06 -74.06 -0.67 1.37 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.14 3.80 7.64 -2.91 -0.02 3.78 16 Total: -1.00 -74.23 339.06 1.92 -72.31 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -1.55 Total: 18.90 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 4.99 Total: 12.89 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -2.10 Total: -112.74 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.31 Total: -31.69 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.88 Total: 40.34 kcal Total: -74.23 1.92 -72.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155266584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.099 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds