Wall clock time and date at job start Fri Apr 10 2020 22:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48497 * 109.47267 * 270.00135 * 3 2 1 5 5 H 1.48501 * 109.47167 * 30.00269 * 3 2 1 6 6 H 1.48497 * 109.46896 * 149.99864 * 3 2 1 7 7 C 1.39910 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99710 * 199.58360 * 7 2 1 9 9 C 1.40992 * 120.00644 * 19.58414 * 7 2 1 10 10 C 1.40999 * 120.31541 * 36.79008 * 9 7 2 11 11 F 1.35108 * 120.12156 * 0.02562 * 10 9 7 12 12 C 1.37741 * 119.76358 * 180.29275 * 10 9 7 13 13 C 1.38782 * 120.43161 * 359.72680 * 12 10 9 14 14 C 1.38236 * 120.66050 * 359.97438 * 13 12 10 15 15 C 1.38628 * 120.21441 * 0.02562 * 14 13 12 16 16 N 1.38802 * 120.21401 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00251 * 359.97438 * 16 15 14 18 18 C 1.50700 * 109.47654 * 179.97438 * 17 16 15 19 19 C 1.37969 * 120.07607 * 259.96322 * 18 17 16 20 20 C 1.38338 * 120.14706 * 180.02562 * 19 18 17 21 21 C 1.38374 * 120.29175 * 359.97438 * 20 19 18 22 22 C 1.37935 * 120.14625 * 0.03186 * 21 20 19 23 23 C 1.39562 * 120.07087 * 79.99560 * 18 17 16 24 24 C 1.47842 * 120.14474 * 359.96150 * 23 18 17 25 25 N 1.34780 * 120.00040 * 180.02562 * 24 23 18 26 26 O 1.21550 * 120.00130 * 0.02562 * 24 23 18 27 27 H 0.97007 * 119.99474 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.78803 * 179.74033 * 12 10 9 29 29 H 1.07995 * 119.67634 * 179.97438 * 13 12 10 30 30 H 1.08000 * 119.89210 * 179.97438 * 14 13 12 31 31 H 0.97000 * 119.99809 * 180.02562 * 16 15 14 32 32 H 1.09006 * 109.47272 * 59.99639 * 17 16 15 33 33 H 1.09002 * 109.46902 * 300.00386 * 17 16 15 34 34 H 1.08000 * 119.93087 * 0.02562 * 19 18 17 35 35 H 1.08003 * 119.85336 * 180.27397 * 20 19 18 36 36 H 1.08006 * 119.92866 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.07478 * 179.97438 * 22 21 20 38 38 H 0.96999 * 119.99585 * 359.97438 * 25 24 23 39 39 H 0.96997 * 120.00310 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4407 2.6526 0.7001 6 1 3.5406 1.4400 0.7001 7 6 2.0085 -1.2117 -0.0005 8 1 3.0417 -1.2390 0.3130 9 6 1.3647 -2.3973 -0.4103 10 6 0.4316 -2.3717 -1.4671 11 9 0.1492 -1.2088 -2.0943 12 6 -0.1952 -3.5356 -1.8541 13 6 0.0900 -4.7338 -1.2146 14 6 1.0063 -4.7802 -0.1806 15 6 1.6530 -3.6251 0.2310 16 7 2.5727 -3.6717 1.2695 17 6 2.8623 -4.9443 1.9349 18 6 3.8870 -4.7234 3.0177 19 6 5.2121 -5.0325 2.7891 20 6 6.1538 -4.8307 3.7822 21 6 5.7744 -4.3177 5.0100 22 6 4.4530 -4.0046 5.2516 23 6 3.4975 -4.2062 4.2541 24 6 2.0794 -3.8726 4.5059 25 7 1.7066 -3.3729 5.7008 26 8 1.2497 -4.0491 3.6353 27 1 -0.4850 0.8401 0.0004 28 1 -0.9131 -3.5157 -2.6607 29 1 -0.4089 -5.6390 -1.5277 30 1 1.2185 -5.7194 0.3087 31 1 3.0230 -2.8615 1.5552 32 1 3.2520 -5.6551 1.2061 33 1 1.9474 -5.3405 2.3754 34 1 5.5148 -5.4328 1.8329 35 1 7.1905 -5.0701 3.5967 36 1 6.5146 -4.1621 5.7810 37 1 4.1581 -3.6046 6.2105 38 1 2.3687 -3.2325 6.3956 39 1 0.7761 -3.1544 5.8662 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166236946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:58:23 Heat of formation + Delta-G solvation = -45.056188 kcal Electronic energy + Delta-G solvation = -25762.828609 eV Core-core repulsion = 21969.691847 eV Total energy + Delta-G solvation = -3793.136762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.85434 -41.33550 -39.52253 -39.04803 -36.17045 -35.36383 -34.71962 -32.68835 -31.81622 -31.35229 -29.38479 -27.19274 -26.39064 -24.78696 -23.16757 -22.47536 -21.86493 -21.37972 -19.24005 -18.94066 -18.21384 -17.73298 -17.28894 -16.82695 -16.39619 -16.10620 -15.96433 -15.90121 -15.75273 -15.58837 -15.44327 -15.09992 -14.58650 -14.45071 -14.03638 -13.77018 -13.45637 -13.39464 -13.10712 -13.03358 -12.92710 -12.62049 -12.47669 -12.28228 -11.97585 -11.84616 -11.32509 -10.91444 -10.85780 -10.65704 -10.31890 -9.92020 -9.81472 -9.01485 -8.57505 -8.00680 -6.12454 -0.12115 0.35297 0.97338 1.13700 1.33204 1.45587 1.46982 1.96565 2.24202 2.59551 2.75547 2.85113 3.25571 3.61431 3.75218 3.84152 3.94228 4.16611 4.29517 4.40064 4.43642 4.54159 4.66256 4.69298 4.77678 4.84387 4.93434 5.06054 5.20341 5.32497 5.35608 5.49675 5.57589 5.59788 5.68885 5.81748 5.92533 5.95829 6.04869 6.25931 6.50142 6.54364 6.79683 6.95052 7.18156 7.25834 7.41053 8.49523 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.004947 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.825676 B = 5658.939755 C = 6514.895179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.500 4.500 8 H 0.073 0.927 9 C -0.001 4.001 10 C 0.026 3.974 11 F -0.160 7.160 12 C -0.205 4.205 13 C -0.142 4.142 14 C -0.206 4.206 15 C 0.168 3.832 16 N -0.717 5.717 17 C 0.169 3.831 18 C -0.063 4.063 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.085 4.085 23 C -0.144 4.144 24 C 0.540 3.460 25 N -0.835 5.835 26 O -0.559 6.559 27 H 0.279 0.721 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.388 0.612 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.414 0.586 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 -8.187 14.938 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.531 4.531 8 H 0.091 0.909 9 C -0.006 4.006 10 C 0.004 3.996 11 F -0.139 7.139 12 C -0.226 4.226 13 C -0.161 4.161 14 C -0.229 4.229 15 C 0.064 3.936 16 N -0.346 5.346 17 C 0.046 3.954 18 C -0.065 4.065 19 C -0.138 4.138 20 C -0.108 4.108 21 C -0.137 4.137 22 C -0.103 4.103 23 C -0.147 4.147 24 C 0.326 3.674 25 N -0.401 5.401 26 O -0.438 6.438 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.221 0.779 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.247 0.753 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 12.237 -8.375 14.370 20.648 hybrid contribution -0.430 1.584 0.077 1.644 sum 11.806 -6.791 14.447 19.855 Atomic orbital electron populations 1.69912 1.09135 1.29770 1.37124 1.26508 0.95202 1.03981 0.92247 0.85370 0.79332 0.77008 0.79002 1.19616 1.19731 1.17616 1.19049 0.98265 0.92242 1.43500 0.90872 1.17419 0.96715 0.93213 0.93288 1.17929 1.04705 0.80642 0.96359 1.91242 1.92855 1.48903 1.80905 1.20630 1.04672 0.92622 1.04642 1.20398 1.00886 0.96385 0.98461 1.20364 1.03559 0.96336 1.02678 1.17860 0.93158 0.93061 0.89486 1.43817 1.45658 1.08974 1.36115 1.20202 0.96691 0.86765 0.91767 1.20064 0.95194 0.97636 0.93560 1.21308 0.91296 1.00386 1.00859 1.21755 1.00612 0.95789 0.92643 1.21575 0.95964 0.98059 0.98126 1.21628 0.92974 0.97330 0.98388 1.19884 0.93091 1.05576 0.96195 1.18795 0.88944 0.77084 0.82544 1.43579 1.14363 1.67194 1.14951 1.90935 1.54534 1.53441 1.44878 0.91119 0.87052 0.84900 0.86412 0.77856 0.92548 0.91677 0.84509 0.82368 0.81671 0.82448 0.75327 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.88 11.11 21.83 0.24 -49.64 16 2 C 0.03 1.92 4.52 85.24 0.39 2.30 16 3 Si 0.97 42.98 29.60 68.60 2.03 45.01 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.50 -28.94 8.13 23.35 0.19 -28.75 16 8 H 0.07 4.04 7.14 -2.91 -0.02 4.02 16 9 C 0.00 -0.05 5.41 -21.13 -0.11 -0.17 16 10 C 0.03 1.50 6.68 22.83 0.15 1.65 16 11 F -0.16 -9.83 14.27 44.97 0.64 -9.19 16 12 C -0.20 -10.55 9.99 22.28 0.22 -10.32 16 13 C -0.14 -6.54 10.03 22.40 0.22 -6.32 16 14 C -0.21 -9.71 9.29 22.36 0.21 -9.50 16 15 C 0.17 8.68 6.68 38.93 0.26 8.94 16 16 N -0.72 -31.93 4.91 -341.84 -1.68 -33.61 16 17 C 0.17 6.11 4.05 85.63 0.35 6.45 16 18 C -0.06 -1.81 5.28 -19.61 -0.10 -1.91 16 19 C -0.12 -2.62 9.66 22.23 0.21 -2.41 16 20 C -0.09 -1.36 10.04 22.33 0.22 -1.14 16 21 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 22 C -0.08 -1.39 9.54 22.53 0.21 -1.17 16 23 C -0.14 -3.74 5.87 -20.09 -0.12 -3.85 16 24 C 0.54 16.60 8.02 86.78 0.70 17.29 16 25 N -0.84 -16.86 8.83 -175.60 -1.55 -18.41 16 26 O -0.56 -23.72 13.59 -3.87 -0.05 -23.77 16 27 H 0.28 15.47 8.30 -92.70 -0.77 14.70 16 28 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 29 H 0.13 5.04 8.06 -2.91 -0.02 5.01 16 30 H 0.12 4.90 6.71 -2.91 -0.02 4.88 16 31 H 0.39 17.96 6.90 -92.71 -0.64 17.32 16 32 H 0.06 1.87 7.80 -2.38 -0.02 1.85 16 33 H 0.07 2.64 5.72 -2.39 -0.01 2.63 16 34 H 0.14 2.72 8.03 -2.91 -0.02 2.70 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.16 1.39 6.41 -2.91 -0.02 1.37 16 38 H 0.41 4.73 6.86 -92.71 -0.64 4.10 16 39 H 0.41 7.98 8.93 -92.71 -0.83 7.16 16 Total: -1.00 -80.30 331.87 1.90 -78.41 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.96 Total: 41.43 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.23 Total: -30.23 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -2.99 Total: -101.65 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 0.64 Total: -9.19 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -80.30 1.90 -78.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166236946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.349 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds