Wall clock time and date at job start Fri Apr 10 2020 22:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 120.00221 * 2 1 4 4 H 1.48495 * 109.47298 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47266 * 119.99820 * 3 2 1 6 6 H 1.48500 * 109.47115 * 239.99540 * 3 2 1 7 7 C 1.40033 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00133 * 4.77771 * 7 2 1 9 9 C 1.41335 * 119.99820 * 184.77004 * 7 2 1 10 10 C 1.40605 * 119.78980 * 185.16485 * 9 7 2 11 11 C 1.38315 * 119.13952 * 179.97438 * 10 9 7 12 12 C 1.38681 * 118.66830 * 359.97438 * 11 10 9 13 13 C 1.39673 * 119.49720 * 0.02562 * 12 11 10 14 14 N 1.39147 * 119.57744 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99858 * 18.99182 * 14 13 12 16 16 O 1.21687 * 120.00403 * 5.63388 * 15 14 13 17 17 C 1.46713 * 119.99780 * 185.63646 * 15 14 13 18 18 C 1.36978 * 126.93933 * 185.74490 * 17 15 14 19 19 N 1.33554 * 107.86019 * 179.97438 * 18 17 15 20 20 C 1.30246 * 109.65893 * 359.97438 * 19 18 17 21 21 N 1.35190 * 108.97822 * 359.79419 * 20 19 18 22 22 C 1.46507 * 123.69739 * 179.47817 * 21 20 19 23 23 C 1.53473 * 108.19183 * 344.30504 * 22 21 20 24 24 O 1.43048 * 109.60799 * 47.91216 * 23 22 21 25 25 C 1.43418 * 114.05447 * 290.03189 * 24 23 22 26 26 N 1.31945 * 120.84404 * 359.73987 * 13 12 11 27 27 H 0.96992 * 120.00371 * 174.98861 * 1 2 3 28 28 H 1.08007 * 120.43359 * 359.94943 * 10 9 7 29 29 H 1.07999 * 120.66500 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.25535 * 180.02562 * 12 11 10 31 31 H 0.96999 * 119.99987 * 198.98325 * 14 13 12 32 32 H 1.08008 * 126.07309 * 359.95851 * 18 17 15 33 33 H 1.08999 * 109.89156 * 224.51159 * 22 21 20 34 34 H 1.09000 * 109.54169 * 103.89972 * 22 21 20 35 35 H 1.08993 * 109.44900 * 287.86943 * 23 22 21 36 36 H 1.08994 * 109.42416 * 167.93737 * 23 22 21 37 37 H 1.09000 * 109.79130 * 290.06078 * 25 24 23 38 38 H 1.08993 * 109.83788 * 169.24919 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2767 2.7464 -0.0006 5 1 3.0953 1.6963 1.2125 6 1 3.0954 1.6962 -1.2124 7 6 2.0075 -1.2128 0.0005 8 1 1.4703 -2.1464 -0.0769 9 6 3.4172 -1.2150 0.1023 10 6 4.1236 -2.4258 -0.0068 11 6 5.5030 -2.4123 0.0943 12 6 6.1431 -1.1994 0.3001 13 6 5.3856 -0.0302 0.4001 14 7 6.0262 1.1877 0.6061 15 6 7.3399 1.3130 0.3321 16 8 7.9427 0.3943 -0.1908 17 6 8.0431 2.5570 0.6643 18 6 9.3378 2.8789 0.3536 19 7 9.5837 4.0993 0.8371 20 6 8.5191 4.5582 1.4306 21 7 7.5350 3.6354 1.3437 22 6 6.1982 3.8163 1.9152 23 6 6.2575 4.9803 2.9138 24 8 6.9282 6.0929 2.3149 25 6 8.3345 5.8911 2.1185 26 7 4.0707 -0.0651 0.2961 27 1 -0.4850 -0.8367 -0.0734 28 1 3.5960 -3.3545 -0.1671 29 1 6.0702 -3.3278 0.0137 30 1 7.2193 -1.1591 0.3825 31 1 5.5273 1.9466 0.9468 32 1 10.0359 2.2562 -0.1863 33 1 5.8882 2.9063 2.4288 34 1 5.4901 4.0493 1.1200 35 1 6.8004 4.6664 3.8052 36 1 5.2446 5.2730 3.1899 37 1 8.8442 5.8828 3.0819 38 1 8.7388 6.6877 1.4940 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882468942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:28 Heat of formation + Delta-G solvation = 25.698704 kcal Electronic energy + Delta-G solvation = -25856.032682 eV Core-core repulsion = 22085.884044 eV Total energy + Delta-G solvation = -3770.148638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.82771 -40.11704 -38.75181 -38.10592 -35.22485 -34.29356 -33.53611 -31.24028 -31.12227 -30.39747 -29.49700 -26.65794 -25.44761 -24.50456 -23.67307 -21.93897 -21.39776 -20.55042 -19.84081 -18.59435 -18.10739 -17.41889 -16.99036 -16.40868 -15.97741 -15.69841 -15.44218 -15.23712 -14.94428 -14.47928 -14.41398 -14.20421 -13.74032 -13.61132 -13.20134 -13.05365 -12.84528 -12.34573 -12.29153 -11.98192 -11.76226 -11.39446 -10.96086 -10.75028 -10.50842 -10.41160 -10.19513 -10.00745 -9.81503 -9.51739 -9.30295 -8.74776 -8.67670 -7.94172 -7.53914 -7.36420 -4.89094 1.00190 2.06793 2.25335 2.52565 2.63530 2.98572 3.13684 3.30044 3.38571 3.51482 3.66097 3.82839 3.90960 4.23068 4.28362 4.40879 4.49489 4.54086 4.78840 4.93815 4.97475 5.06611 5.10652 5.31430 5.41135 5.67105 5.72806 5.88751 6.18282 6.30783 6.37657 6.40986 6.42039 6.62467 6.97707 7.02746 7.32180 7.39266 7.46686 7.61258 7.62942 7.98483 8.08783 8.25446 8.52652 9.25867 9.88811 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.004785 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.189697 B = 5850.287616 C = 7380.551736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.043 3.957 3 Si 1.155 2.845 4 H -0.329 1.329 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.273 3.727 10 C -0.272 4.272 11 C -0.033 4.033 12 C -0.308 4.308 13 C 0.384 3.616 14 N -0.657 5.657 15 C 0.596 3.404 16 O -0.494 6.494 17 C -0.072 4.072 18 C 0.068 3.932 19 N -0.479 5.479 20 C 0.190 3.810 21 N -0.439 5.439 22 C 0.047 3.953 23 C 0.051 3.949 24 O -0.368 6.368 25 C 0.148 3.852 26 N -0.600 5.600 27 H 0.285 0.715 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.401 0.599 32 H 0.190 0.810 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.812 10.848 6.585 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.178 4.178 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.506 4.506 8 H 0.103 0.897 9 C 0.149 3.851 10 C -0.294 4.294 11 C -0.057 4.057 12 C -0.333 4.333 13 C 0.154 3.846 14 N -0.304 5.304 15 C 0.383 3.617 16 O -0.368 6.368 17 C -0.187 4.187 18 C -0.086 4.086 19 N -0.199 5.199 20 C -0.072 4.072 21 N -0.124 5.124 22 C -0.075 4.075 23 C -0.026 4.026 24 O -0.284 6.284 25 C 0.069 3.931 26 N -0.326 5.326 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.238 0.762 32 H 0.207 0.793 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.910 13.031 6.276 18.736 hybrid contribution -0.530 -3.190 0.037 3.234 sum 11.380 9.841 6.313 16.316 Atomic orbital electron populations 1.70633 1.08124 1.32956 1.30741 1.27733 0.95347 1.06068 0.88687 0.81838 0.70642 0.69936 0.78449 1.26298 1.21578 1.22203 1.20749 0.90307 0.96433 1.43120 0.89677 1.18266 0.93425 0.85879 0.87526 1.21635 0.93944 0.98459 1.15399 1.20939 0.94111 0.96423 0.94272 1.21504 1.00968 0.91090 1.19742 1.18019 0.88930 0.83602 0.94081 1.43446 1.09417 1.13355 1.64142 1.16712 0.81051 0.85314 0.78668 1.90792 1.66669 1.38172 1.41120 1.21019 0.97224 0.90831 1.09662 1.22753 0.92745 0.92716 1.00384 1.69861 1.25125 1.10707 1.14173 1.24185 0.84817 0.95221 1.02980 1.45314 1.12217 1.13613 1.41238 1.23115 0.82242 1.02330 0.99846 1.23026 1.00668 0.85249 0.93662 1.88196 1.20277 1.37962 1.81998 1.21355 0.82425 0.89796 0.99494 1.65956 1.06875 1.29709 1.30054 0.90411 0.87469 0.87329 0.84317 0.76174 0.79311 0.87222 0.87511 0.90979 0.85295 0.89259 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.25 13.65 55.55 0.76 -20.50 16 2 C 0.04 1.14 5.52 -17.34 -0.10 1.05 16 3 Si 1.16 27.03 25.61 -169.99 -4.35 22.68 16 4 H -0.33 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.29 -6.25 6.61 56.52 0.37 -5.88 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.47 -12.60 9.57 -37.73 -0.36 -12.96 16 8 H 0.09 2.25 8.05 -52.49 -0.42 1.83 16 9 C 0.27 7.00 6.40 -84.99 -0.54 6.46 16 10 C -0.27 -6.32 9.83 -38.66 -0.38 -6.70 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.31 -6.82 8.82 -38.88 -0.34 -7.16 16 13 C 0.38 8.69 7.50 -155.06 -1.16 7.53 16 14 N -0.66 -12.38 5.28 -12.59 -0.07 -12.45 16 15 C 0.60 10.60 7.62 -12.84 -0.10 10.50 16 16 O -0.49 -9.88 13.71 5.20 0.07 -9.81 16 17 C -0.07 -1.07 6.95 -82.49 -0.57 -1.64 16 18 C 0.07 0.95 11.68 -17.26 -0.20 0.75 16 19 N -0.48 -6.44 11.19 -10.28 -0.12 -6.56 16 20 C 0.19 2.22 7.78 -155.29 -1.21 1.02 16 21 N -0.44 -5.47 3.17 -109.66 -0.35 -5.82 16 22 C 0.05 0.47 5.51 -3.79 -0.02 0.44 16 23 C 0.05 0.36 6.83 37.40 0.26 0.62 16 24 O -0.37 -3.15 10.78 -35.23 -0.38 -3.53 16 25 C 0.15 1.15 7.29 36.21 0.26 1.42 16 26 N -0.60 -14.86 4.54 -10.27 -0.05 -14.90 16 27 H 0.28 7.20 8.72 -40.82 -0.36 6.85 16 28 H 0.11 2.31 8.06 -52.48 -0.42 1.89 16 29 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.14 2.99 5.34 -52.50 -0.28 2.71 16 31 H 0.40 6.68 5.24 -40.82 -0.21 6.46 16 32 H 0.19 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.11 1.07 6.96 -51.93 -0.36 0.71 16 34 H 0.11 1.04 7.95 -51.93 -0.41 0.63 16 35 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 36 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -32.04 319.16 -8.37 -40.41 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.83 Total: 5.46 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -4.87 Total: 0.19 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.18 Total: -60.22 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.31 Total: -13.33 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -4.35 Total: 22.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.04 -8.37 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.109 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds