Wall clock time and date at job start Fri Apr 10 2020 22:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 120.00221 * 2 1 4 4 H 1.48495 * 109.47298 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47266 * 119.99820 * 3 2 1 6 6 H 1.48500 * 109.47115 * 239.99540 * 3 2 1 7 7 C 1.40033 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00133 * 4.77771 * 7 2 1 9 9 C 1.41335 * 119.99820 * 184.77004 * 7 2 1 10 10 C 1.40605 * 119.78980 * 185.16485 * 9 7 2 11 11 C 1.38315 * 119.13952 * 179.97438 * 10 9 7 12 12 C 1.38681 * 118.66830 * 359.97438 * 11 10 9 13 13 C 1.39673 * 119.49720 * 0.02562 * 12 11 10 14 14 N 1.39147 * 119.57744 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99858 * 18.99182 * 14 13 12 16 16 O 1.21687 * 120.00403 * 5.63388 * 15 14 13 17 17 C 1.46713 * 119.99780 * 185.63646 * 15 14 13 18 18 C 1.36978 * 126.93933 * 185.74490 * 17 15 14 19 19 N 1.33554 * 107.86019 * 179.97438 * 18 17 15 20 20 C 1.30246 * 109.65893 * 359.97438 * 19 18 17 21 21 N 1.35190 * 108.97822 * 359.79419 * 20 19 18 22 22 C 1.46507 * 123.69739 * 179.47817 * 21 20 19 23 23 C 1.53473 * 108.19183 * 344.30504 * 22 21 20 24 24 O 1.43048 * 109.60799 * 47.91216 * 23 22 21 25 25 C 1.43418 * 114.05447 * 290.03189 * 24 23 22 26 26 N 1.31945 * 120.84404 * 359.73987 * 13 12 11 27 27 H 0.96992 * 120.00371 * 174.98861 * 1 2 3 28 28 H 1.08007 * 120.43359 * 359.94943 * 10 9 7 29 29 H 1.07999 * 120.66500 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.25535 * 180.02562 * 12 11 10 31 31 H 0.96999 * 119.99987 * 198.98325 * 14 13 12 32 32 H 1.08008 * 126.07309 * 359.95851 * 18 17 15 33 33 H 1.08999 * 109.89156 * 224.51159 * 22 21 20 34 34 H 1.09000 * 109.54169 * 103.89972 * 22 21 20 35 35 H 1.08993 * 109.44900 * 287.86943 * 23 22 21 36 36 H 1.08994 * 109.42416 * 167.93737 * 23 22 21 37 37 H 1.09000 * 109.79130 * 290.06078 * 25 24 23 38 38 H 1.08993 * 109.83788 * 169.24919 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2767 2.7464 -0.0006 5 1 3.0953 1.6963 1.2125 6 1 3.0954 1.6962 -1.2124 7 6 2.0075 -1.2128 0.0005 8 1 1.4703 -2.1464 -0.0769 9 6 3.4172 -1.2150 0.1023 10 6 4.1236 -2.4258 -0.0068 11 6 5.5030 -2.4123 0.0943 12 6 6.1431 -1.1994 0.3001 13 6 5.3856 -0.0302 0.4001 14 7 6.0262 1.1877 0.6061 15 6 7.3399 1.3130 0.3321 16 8 7.9427 0.3943 -0.1908 17 6 8.0431 2.5570 0.6643 18 6 9.3378 2.8789 0.3536 19 7 9.5837 4.0993 0.8371 20 6 8.5191 4.5582 1.4306 21 7 7.5350 3.6354 1.3437 22 6 6.1982 3.8163 1.9152 23 6 6.2575 4.9803 2.9138 24 8 6.9282 6.0929 2.3149 25 6 8.3345 5.8911 2.1185 26 7 4.0707 -0.0651 0.2961 27 1 -0.4850 -0.8367 -0.0734 28 1 3.5960 -3.3545 -0.1671 29 1 6.0702 -3.3278 0.0137 30 1 7.2193 -1.1591 0.3825 31 1 5.5273 1.9466 0.9468 32 1 10.0359 2.2562 -0.1863 33 1 5.8882 2.9063 2.4288 34 1 5.4901 4.0493 1.1200 35 1 6.8004 4.6664 3.8052 36 1 5.2446 5.2730 3.1899 37 1 8.8442 5.8828 3.0819 38 1 8.7388 6.6877 1.4940 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:27 Heat of formation + Delta-G solvation = 4.843726 kcal Electronic energy + Delta-G solvation = -25856.937022 eV Core-core repulsion = 22085.884044 eV Total energy + Delta-G solvation = -3771.052978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.80761 -41.67013 -39.92470 -39.31139 -36.62221 -35.74221 -35.05560 -33.07233 -32.22852 -31.37547 -30.89670 -27.75308 -27.10551 -25.42231 -24.87279 -23.70649 -22.77165 -21.83676 -20.97166 -20.32259 -19.33147 -18.58936 -18.14266 -17.58634 -17.09319 -16.85712 -16.65720 -16.34734 -16.33485 -15.91283 -15.60259 -15.46439 -15.24435 -14.90191 -14.59864 -14.40361 -14.29069 -13.89349 -13.78405 -13.10821 -12.97924 -12.76645 -12.35762 -12.30723 -11.93744 -11.72095 -11.61072 -11.24705 -11.23478 -11.06679 -10.90084 -10.49863 -9.85796 -9.76616 -9.33588 -9.30496 -6.87619 -0.17732 0.59475 0.68715 1.17641 1.44663 1.50229 1.56725 1.65604 1.97961 2.01050 2.36469 2.57565 2.61466 2.90418 3.08401 3.28723 3.48755 3.72335 3.77333 3.92186 3.99596 4.21019 4.26567 4.29372 4.44183 4.51339 4.55753 4.61846 4.63917 4.68481 4.78174 5.20566 5.26230 5.30810 5.34849 5.63644 5.64988 5.69153 5.80855 5.83778 6.10152 6.31681 6.55834 6.63334 6.72436 7.38523 7.90075 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.004785 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.189697 B = 5850.287616 C = 7380.551736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.016 3.984 3 Si 1.182 2.818 4 H -0.323 1.323 5 H -0.266 1.266 6 H -0.308 1.308 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.258 3.742 10 C -0.286 4.286 11 C -0.025 4.025 12 C -0.305 4.305 13 C 0.372 3.628 14 N -0.654 5.654 15 C 0.601 3.399 16 O -0.521 6.521 17 C -0.099 4.099 18 C 0.073 3.927 19 N -0.499 5.499 20 C 0.205 3.795 21 N -0.441 5.441 22 C 0.034 3.966 23 C 0.054 3.946 24 O -0.376 6.376 25 C 0.147 3.853 26 N -0.612 5.612 27 H 0.283 0.717 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.410 0.590 32 H 0.199 0.801 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.785 12.535 7.815 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.201 4.201 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.193 1.193 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.090 0.910 9 C 0.133 3.867 10 C -0.308 4.308 11 C -0.049 4.049 12 C -0.330 4.330 13 C 0.142 3.858 14 N -0.302 5.302 15 C 0.390 3.610 16 O -0.397 6.397 17 C -0.214 4.214 18 C -0.081 4.081 19 N -0.218 5.218 20 C -0.058 4.058 21 N -0.125 5.125 22 C -0.087 4.087 23 C -0.023 4.023 24 O -0.293 6.293 25 C 0.069 3.931 26 N -0.338 5.338 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.250 0.750 32 H 0.215 0.785 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.171 0.829 37 H 0.136 0.864 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.877 14.737 7.538 21.600 hybrid contribution -0.916 -3.706 -0.340 3.833 sum 12.961 11.031 7.198 18.479 Atomic orbital electron populations 1.70654 1.08394 1.32866 1.32866 1.28495 0.95609 1.07819 0.88221 0.81523 0.70114 0.68278 0.78594 1.25563 1.19341 1.23715 1.20753 0.91162 0.96167 1.45721 0.91023 1.18457 0.93417 0.87204 0.87615 1.21816 0.94932 0.98200 1.15844 1.21351 0.93537 0.97762 0.92226 1.21845 1.01532 0.91330 1.18264 1.18343 0.88530 0.85324 0.93585 1.43466 1.09881 1.12571 1.64312 1.17022 0.80362 0.85975 0.77606 1.90750 1.66991 1.39507 1.42411 1.20588 0.97543 0.90932 1.12315 1.23028 0.92546 0.93029 0.99541 1.69916 1.26103 1.10530 1.15286 1.25069 0.83886 0.95901 1.00952 1.45469 1.13245 1.12956 1.40876 1.23425 0.81043 1.03707 1.00534 1.23215 1.02280 0.83813 0.92966 1.88200 1.20593 1.38314 1.82158 1.21751 0.82631 0.87965 1.00793 1.65960 1.07900 1.29620 1.30297 0.90662 0.86341 0.83472 0.83417 0.75034 0.78450 0.87289 0.87672 0.89271 0.82919 0.86384 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.66 13.65 21.84 0.30 -44.36 16 2 C 0.02 0.85 5.52 85.29 0.47 1.32 16 3 Si 1.18 54.67 25.61 68.60 1.76 56.43 16 4 H -0.32 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.27 -11.20 6.61 99.48 0.66 -10.54 16 6 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 7 C -0.51 -27.54 9.57 23.47 0.22 -27.32 16 8 H 0.07 3.95 8.05 -2.91 -0.02 3.93 16 9 C 0.26 13.29 6.40 40.20 0.26 13.54 16 10 C -0.29 -13.07 9.83 22.87 0.22 -12.85 16 11 C -0.02 -1.01 10.15 22.39 0.23 -0.78 16 12 C -0.31 -13.01 8.82 22.72 0.20 -12.81 16 13 C 0.37 16.49 7.50 133.28 1.00 17.49 16 14 N -0.65 -23.96 5.28 -311.95 -1.65 -25.61 16 15 C 0.60 20.80 7.62 86.46 0.66 21.46 16 16 O -0.52 -20.38 13.71 -4.31 -0.06 -20.44 16 17 C -0.10 -2.81 6.95 40.22 0.28 -2.53 16 18 C 0.07 1.95 11.68 84.14 0.98 2.93 16 19 N -0.50 -12.35 11.19 -186.44 -2.09 -14.44 16 20 C 0.20 4.24 7.78 138.29 1.08 5.31 16 21 N -0.44 -10.09 3.17 -500.86 -1.59 -11.68 16 22 C 0.03 0.60 5.51 86.54 0.48 1.08 16 23 C 0.05 0.58 6.83 72.14 0.49 1.07 16 24 O -0.38 -5.07 10.78 -148.98 -1.61 -6.67 16 25 C 0.15 1.74 7.29 71.37 0.52 2.26 16 26 N -0.61 -29.98 4.54 -186.42 -0.85 -30.83 16 27 H 0.28 14.81 8.72 -92.71 -0.81 14.00 16 28 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 29 H 0.15 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.15 6.11 5.34 -3.14 -0.02 6.09 16 31 H 0.41 13.16 5.24 -92.71 -0.49 12.67 16 32 H 0.20 4.65 8.06 -2.91 -0.02 4.63 16 33 H 0.11 1.91 6.96 -2.39 -0.02 1.90 16 34 H 0.11 1.87 7.95 -2.39 -0.02 1.85 16 35 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -69.15 319.16 1.87 -67.28 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.55 Total: 20.12 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 7.09 Total: 10.19 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -5.87 Total: -126.92 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.67 Total: -27.11 kcal Atomic # 14 Polarization: 54.67 SS G_CDS: 1.76 Total: 56.43 kcal Total: -69.15 1.87 -67.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.124 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds