Wall clock time and date at job start Fri Apr 10 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48495 * 109.46982 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47179 * 240.00010 * 3 2 1 6 6 H 1.48499 * 109.46866 * 120.00054 * 3 2 1 7 7 C 1.38813 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00262 * 215.37984 * 7 2 1 9 9 N 1.36938 * 120.00305 * 35.38702 * 7 2 1 10 10 C 1.43462 * 118.94596 * 203.00043 * 9 7 2 11 11 C 1.53802 * 107.95558 * 273.60637 * 10 9 7 12 12 C 1.47137 * 111.84019 * 281.66266 * 11 10 9 13 13 N 1.48216 * 110.34233 * 58.29989 * 12 11 10 14 14 C 1.34770 * 119.96920 * 102.47135 * 13 12 11 15 15 O 1.21615 * 120.00141 * 356.85866 * 14 13 12 16 16 C 1.47378 * 119.99847 * 176.86608 * 14 13 12 17 17 C 1.36420 * 127.19092 * 15.85798 * 16 14 13 18 18 O 1.33658 * 108.39404 * 179.97438 * 17 16 14 19 19 C 1.34211 * 110.91014 * 0.02562 * 18 17 16 20 20 C 1.50702 * 125.43801 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.46597 * 119.97543 * 20 19 18 22 22 F 1.39894 * 109.47252 * 239.97674 * 20 19 18 23 23 C 1.34173 * 109.12396 * 359.74630 * 19 18 17 24 24 C 1.43625 * 120.05653 * 282.49185 * 13 12 11 25 25 C 1.48862 * 118.93655 * 22.72341 * 9 7 2 26 26 H 0.96996 * 120.00184 * 185.85995 * 1 2 3 27 27 H 1.09002 * 109.76249 * 33.21818 * 10 9 7 28 28 H 1.08999 * 109.76947 * 153.93774 * 10 9 7 29 29 H 1.09003 * 109.00501 * 42.26901 * 11 10 9 30 30 H 1.09003 * 109.00677 * 161.04970 * 11 10 9 31 31 H 1.08996 * 109.32401 * 178.56608 * 12 11 10 32 32 H 1.08998 * 109.32436 * 298.20367 * 12 11 10 33 33 H 1.07994 * 125.80285 * 359.97362 * 17 16 14 34 34 H 1.09001 * 109.47062 * 359.97438 * 20 19 18 35 35 H 1.08004 * 127.02782 * 180.26677 * 23 19 18 36 36 H 1.09001 * 108.87070 * 211.44613 * 24 13 12 37 37 H 1.08999 * 108.87429 * 329.98114 * 24 13 12 38 38 H 1.09005 * 109.48220 * 260.62992 * 25 9 7 39 39 H 1.09004 * 109.48182 * 20.66113 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 2.9405 -1.2884 0.5421 9 7 1.5152 -2.2789 -0.6857 10 6 1.9265 -3.5977 -0.2988 11 6 3.2376 -3.9206 -1.0351 12 6 2.9989 -4.3037 -2.4355 13 7 2.2929 -3.2165 -3.1540 14 6 2.9754 -2.4057 -3.9865 15 8 4.1795 -2.5295 -4.1044 16 6 2.2626 -1.3688 -4.7539 17 6 1.0021 -0.8975 -4.5299 18 8 0.7318 0.0362 -5.4473 19 6 1.7711 0.2052 -6.2794 20 6 1.8185 1.1740 -7.4329 21 9 2.8686 2.0779 -7.2397 22 9 2.0220 0.4704 -8.6247 23 6 2.7632 -0.6225 -5.9175 24 6 0.8821 -3.0261 -2.9635 25 6 0.5627 -2.0435 -1.8053 26 1 -0.4850 -0.8356 0.0858 27 1 2.0907 -3.6314 0.7783 28 1 1.1590 -4.3198 -0.5773 29 1 3.8830 -3.0424 -1.0124 30 1 3.7395 -4.7415 -0.5230 31 1 3.9537 -4.4982 -2.9240 32 1 2.3890 -5.2067 -2.4635 33 1 0.3360 -1.2234 -3.7448 34 1 0.8759 1.7185 -7.4889 35 1 3.7312 -0.7216 -6.3861 36 1 0.4512 -2.6364 -3.8858 37 1 0.4234 -3.9892 -2.7399 38 1 -0.4567 -2.2075 -1.4559 39 1 0.6649 -1.0179 -2.1600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981828097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:57:54 Heat of formation + Delta-G solvation = -61.158497 kcal Electronic energy + Delta-G solvation = -27561.394036 eV Core-core repulsion = 23336.789801 eV Total energy + Delta-G solvation = -4224.604235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.27497 -47.27840 -42.69298 -39.77518 -37.16747 -34.57206 -33.74286 -32.63205 -31.27094 -30.64515 -28.05119 -26.32821 -25.48747 -23.93027 -23.48206 -21.64526 -21.16286 -19.91508 -19.40087 -17.90003 -17.62001 -17.53998 -17.22888 -16.78759 -16.12696 -15.94872 -15.66067 -14.91233 -14.40525 -14.15486 -14.10354 -13.68763 -13.63392 -13.52320 -13.28084 -13.16272 -13.13997 -12.89099 -12.60436 -12.27522 -12.00865 -11.47735 -11.36313 -11.12356 -10.77573 -10.53373 -10.43121 -10.36325 -10.05320 -9.86612 -9.65893 -9.58247 -8.89065 -8.33098 -8.28698 -7.05265 -6.24158 -3.26386 1.32475 1.82498 2.30864 3.19286 3.45760 3.53122 3.53690 3.68654 3.72073 4.03266 4.38951 4.52035 4.63152 4.70984 4.83687 4.89294 5.04380 5.24422 5.36712 5.42584 5.48140 5.52277 5.66587 5.76669 5.79415 5.82765 6.03294 6.14307 6.24864 6.34129 6.45654 6.61978 6.67814 6.79615 6.83054 7.06478 7.72475 7.97936 8.44621 8.49169 9.00768 9.73281 10.11289 11.04175 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.005625 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.548336 B = 4976.244560 C = 6198.267633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.012 4.012 3 Si 1.038 2.962 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.361 4.361 8 H 0.057 0.943 9 N -0.588 5.588 10 C 0.164 3.836 11 C -0.170 4.170 12 C 0.133 3.867 13 N -0.579 5.579 14 C 0.593 3.407 15 O -0.545 6.545 16 C -0.232 4.232 17 C 0.034 3.966 18 O -0.158 6.158 19 C -0.119 4.119 20 C 0.364 3.636 21 F -0.185 7.185 22 F -0.187 7.187 23 C -0.097 4.097 24 C 0.061 3.939 25 C 0.123 3.877 26 H 0.267 0.733 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.245 0.755 34 H 0.133 0.867 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 -4.037 -12.215 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.216 4.216 3 Si 0.868 3.132 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.490 4.490 8 H 0.075 0.925 9 N -0.310 5.310 10 C 0.036 3.964 11 C -0.211 4.211 12 C 0.012 3.988 13 N -0.310 5.310 14 C 0.382 3.618 15 O -0.424 6.424 16 C -0.237 4.237 17 C -0.035 4.035 18 O -0.054 6.054 19 C -0.168 4.168 20 C 0.310 3.690 21 F -0.166 7.166 22 F -0.168 7.168 23 C -0.117 4.117 24 C -0.064 4.064 25 C -0.003 4.003 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.260 0.740 34 H 0.150 0.850 35 H 0.181 0.819 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.265 -2.300 -12.391 12.666 hybrid contribution 0.534 -1.704 0.337 1.818 sum -0.731 -4.005 -12.054 12.723 Atomic orbital electron populations 1.70860 1.06839 1.29858 1.46266 1.25560 0.95958 1.01105 0.98929 0.83920 0.75605 0.77010 0.76705 1.21017 1.21964 1.21787 1.19848 1.04948 0.91756 1.32443 0.92479 1.43604 1.52905 1.01849 1.32668 1.20303 0.92491 0.86754 0.96855 1.21843 1.02164 1.01655 0.95473 1.20597 0.97430 0.87632 0.93141 1.47138 1.08786 1.32003 1.43045 1.17091 0.86222 0.79836 0.78647 1.90730 1.13663 1.70695 1.67340 1.21515 0.95839 1.04715 1.01607 1.26407 0.97613 0.87601 0.91897 1.83739 1.38530 1.48526 1.34593 1.22303 0.89607 1.05759 0.99143 1.19004 0.90407 0.82226 0.77341 1.93076 1.61269 1.67124 1.95097 1.93054 1.96221 1.80401 1.47171 1.22575 0.99484 0.94354 0.95240 1.22591 0.81792 1.02094 0.99969 1.22366 0.93471 0.97488 0.87013 0.92244 0.93251 0.94943 0.90965 0.92332 0.90134 0.91811 0.74005 0.84964 0.81866 0.90250 0.90728 0.94072 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 12.64 55.49 0.70 -24.29 16 2 C -0.01 -0.33 4.34 -17.43 -0.08 -0.40 16 3 Si 1.04 25.10 30.04 -169.99 -5.11 19.99 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.36 -9.61 9.05 -15.06 -0.14 -9.75 16 8 H 0.06 1.59 8.03 -52.49 -0.42 1.17 16 9 N -0.59 -13.32 2.42 -171.78 -0.42 -13.74 16 10 C 0.16 3.15 5.63 -5.23 -0.03 3.12 16 11 C -0.17 -3.00 5.64 -29.13 -0.16 -3.16 16 12 C 0.13 2.14 5.68 -5.91 -0.03 2.11 16 13 N -0.58 -10.17 2.46 -177.73 -0.44 -10.61 16 14 C 0.59 11.68 7.66 -12.54 -0.10 11.58 16 15 O -0.55 -12.24 16.47 5.26 0.09 -12.15 16 16 C -0.23 -4.12 6.07 -103.27 -0.63 -4.74 16 17 C 0.03 0.55 9.26 30.08 0.28 0.83 16 18 O -0.16 -2.34 10.52 7.65 0.08 -2.26 16 19 C -0.12 -1.68 6.71 -35.74 -0.24 -1.92 16 20 C 0.36 3.95 5.75 36.01 0.21 4.15 16 21 F -0.18 -2.32 17.32 2.25 0.04 -2.28 16 22 F -0.19 -2.13 17.32 2.25 0.04 -2.10 16 23 C -0.10 -1.55 10.93 -37.46 -0.41 -1.96 16 24 C 0.06 0.95 4.72 -4.40 -0.02 0.93 16 25 C 0.12 2.44 4.45 -1.57 -0.01 2.43 16 26 H 0.27 7.38 7.09 -40.82 -0.29 7.09 16 27 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 28 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 29 H 0.07 1.56 7.91 -51.93 -0.41 1.15 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.33 7.16 -51.93 -0.37 0.96 16 32 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 33 H 0.24 3.64 3.15 -52.49 -0.17 3.48 16 34 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.16 2.46 8.06 -52.48 -0.42 2.03 16 36 H 0.08 1.07 4.39 -51.93 -0.23 0.84 16 37 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 38 H 0.04 0.82 7.44 -51.93 -0.39 0.43 16 39 H 0.07 1.63 4.89 -51.93 -0.25 1.37 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -32.04 322.20 -5.73 -37.77 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.22 Total: 1.58 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.35 Total: 3.22 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.15 Total: -48.63 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.17 Total: -14.41 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.08 Total: -4.38 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.11 Total: 19.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.04 -5.73 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981828097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.390 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds